Wall clock time and date at job start Wed Apr 1 2020 04:48:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50700 * 109.47018 * 2 1
4 4 C 1.38353 * 120.34626 * 270.02147 * 3 2 1
5 5 N 1.31933 * 121.07673 * 179.97438 * 4 3 2
6 6 C 1.31688 * 121.87799 * 359.72506 * 5 4 3
7 7 C 1.39518 * 120.56930 * 0.54256 * 6 5 4
8 8 C 1.47846 * 120.55943 * 179.75438 * 7 6 5
9 9 O 1.21550 * 120.00008 * 135.18994 * 8 7 6
10 10 N 1.34769 * 119.99657 * 314.91282 * 8 7 6
11 11 C 1.46927 * 120.63592 * 3.31616 * 10 8 7
12 12 C 1.52761 * 109.01023 * 233.58691 * 11 10 8
13 13 C 1.53047 * 109.37963 * 305.58264 * 12 11 10
14 14 N 1.46491 * 109.44760 * 181.25622 * 13 12 11
15 15 C 1.36939 * 119.99946 * 299.93946 * 14 13 12
16 16 H 1.07998 * 119.99977 * 326.12614 * 15 14 13
17 17 C 1.38818 * 120.00226 * 146.13117 * 15 14 13
18 18 N 1.31618 * 119.99807 * 334.90705 * 17 15 14
19 19 Si 1.86798 * 120.00188 * 154.91175 * 17 15 14
20 20 H 1.48496 * 109.47468 * 59.99684 * 19 17 15
21 21 H 1.48499 * 109.46918 * 179.97438 * 19 17 15
22 22 H 1.48506 * 109.46757 * 299.99447 * 19 17 15
23 23 C 1.46502 * 120.00397 * 119.93938 * 14 13 12
24 24 C 1.52998 * 109.46908 * 85.94418 * 23 14 13
25 25 O 1.42899 * 109.47281 * 65.00403 * 24 23 14
26 26 C 1.53042 * 109.53608 * 61.24346 * 13 12 11
27 27 C 1.46929 * 120.62832 * 183.59475 * 10 8 7
28 28 C 1.38353 * 120.34936 * 90.00690 * 3 2 1
29 29 H 1.09007 * 109.46682 * 300.00283 * 1 2 3
30 30 H 1.09001 * 109.47315 * 59.99895 * 1 2 3
31 31 H 1.08996 * 109.47352 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.46751 * 239.99961 * 2 1 3
33 33 H 1.09001 * 109.47315 * 120.00105 * 2 1 3
34 34 H 1.07996 * 119.46537 * 0.02562 * 4 3 2
35 35 H 1.07999 * 119.71318 * 180.27265 * 6 5 4
36 36 H 1.09003 * 109.58206 * 353.41741 * 11 10 8
37 37 H 1.08997 * 109.58626 * 113.83985 * 11 10 8
38 38 H 1.08999 * 109.56246 * 185.55223 * 12 11 10
39 39 H 1.08995 * 109.36264 * 65.49619 * 12 11 10
40 40 H 1.08996 * 109.46066 * 301.22239 * 13 12 11
41 41 H 0.96995 * 120.00321 * 180.02562 * 18 17 15
42 42 H 1.08998 * 109.47185 * 205.94906 * 23 14 13
43 43 H 1.09000 * 109.46721 * 325.94643 * 23 14 13
44 44 H 1.09005 * 109.46929 * 185.00623 * 24 23 14
45 45 H 1.08999 * 109.47125 * 305.00089 * 24 23 14
46 46 H 0.96704 * 114.00127 * 179.97438 * 25 24 23
47 47 H 1.09003 * 109.49398 * 178.68520 * 26 13 12
48 48 H 1.08996 * 109.49685 * 58.58178 * 26 13 12
49 49 H 1.09003 * 109.58655 * 246.15791 * 27 10 8
50 50 H 1.09000 * 109.58576 * 6.43615 * 27 10 8
51 51 H 1.08004 * 120.85406 * 359.97438 * 28 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2649 2.0800 -1.1940
5 7 2.7041 3.3239 -1.2108
6 6 2.9355 3.9948 -0.1015
7 6 2.7312 3.3994 1.1436
8 6 2.9962 4.1510 2.3888
9 8 2.1985 4.1098 3.3051
10 7 4.1249 4.8775 2.5101
11 6 5.0664 4.9910 1.3879
12 6 6.4599 4.5853 1.8645
13 6 6.8398 5.4184 3.0908
14 7 8.1880 5.0517 3.5310
15 6 8.4577 3.7638 3.9104
16 1 7.6988 3.1767 4.4060
17 6 9.7067 3.2130 3.6579
18 7 10.4434 3.6773 2.6710
19 14 10.3417 1.8127 4.7188
20 1 9.4138 0.6575 4.6212
21 1 11.6895 1.4058 4.2464
22 1 10.4266 2.2616 6.1319
23 6 9.2478 6.0626 3.5655
24 6 9.1965 6.8098 4.8996
25 8 9.5014 5.9062 5.9638
26 6 5.8435 5.1493 4.2210
27 6 4.4402 5.5659 3.7692
28 6 2.2655 2.0799 1.1939
29 1 -0.3633 0.5139 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 2.0831 1.5683 -2.1275
35 1 3.2906 5.0133 -0.1561
36 1 4.7520 4.3315 0.5790
37 1 5.0900 6.0216 1.0336
38 1 7.1832 4.7598 1.0679
39 1 6.4576 3.5281 2.1294
40 1 6.8178 6.4769 2.8317
41 1 11.3159 3.2922 2.4944
42 1 10.2174 5.5763 3.4583
43 1 9.1030 6.7686 2.7478
44 1 9.9258 7.6199 4.8906
45 1 8.1981 7.2215 5.0473
46 1 9.4877 6.3127 6.8411
47 1 6.1282 5.7251 5.1016
48 1 5.8470 4.0867 4.4636
49 1 4.4118 6.6443 3.6131
50 1 3.7113 5.2876 4.5304
51 1 2.0918 1.5895 2.1404
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001098428586.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:48:31
Heat of formation + Delta-G solvation = -44.445940 kcal
Electronic energy + Delta-G solvation = -31634.135876 eV
Core-core repulsion = 27533.361776 eV
Total energy + Delta-G solvation = -4100.774101 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.00892 -40.54049 -39.06842 -37.69342 -36.30939 -35.73067 -34.05382 -33.35083
-32.01222 -31.99524 -30.60454 -29.42614 -26.92675 -25.77615 -25.43815 -24.54730
-23.90297 -22.97010 -22.12067 -21.51024 -20.28607 -18.69359 -18.21171 -18.08080
-17.99215 -17.55550 -17.01854 -16.76298 -16.18315 -16.07920 -15.63254 -15.56349
-15.09770 -14.98625 -14.75460 -14.69911 -14.56601 -14.33331 -14.24395 -14.12109
-13.73043 -13.67575 -13.26216 -13.15792 -13.02208 -12.99558 -12.75668 -12.54184
-12.45195 -12.39598 -12.13652 -11.90765 -11.83082 -11.62033 -11.57380 -11.30723
-11.09831 -10.88781 -10.62279 -10.47055 -10.35971 -9.94197 -9.71189 -8.49536
-7.76223 -5.25048 -0.31018 0.11657 1.42327 1.46855 1.50346 1.54086
1.91848 2.56555 2.67730 3.19653 3.33924 3.46023 3.55808 3.71378
3.74584 3.84636 3.88058 3.91848 4.04163 4.13563 4.20336 4.30520
4.38836 4.42675 4.47044 4.53946 4.58992 4.60471 4.67767 4.75464
4.80819 4.81931 4.88763 4.90046 4.92038 4.94918 5.07333 5.10101
5.14281 5.17061 5.30604 5.35687 5.41300 5.55611 5.57591 5.62836
5.75940 5.84792 6.26458 6.53034 6.79064 6.95840 7.21122 7.28943
7.99767 8.45795 9.21574
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012617 B = 0.003030 C = 0.002757
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2218.731026 B = 9237.806386 C =10152.112862
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.079 4.079
3 C -0.133 4.133
4 C 0.117 3.883
5 N -0.496 5.496
6 C 0.122 3.878
7 C -0.188 4.188
8 C 0.563 3.437
9 O -0.577 6.577
10 N -0.594 5.594
11 C 0.104 3.896
12 C -0.124 4.124
13 C 0.173 3.827
14 N -0.583 5.583
15 C -0.223 4.223
16 H 0.039 0.961
17 C -0.028 4.028
18 N -0.915 5.915
19 Si 0.934 3.066
20 H -0.285 1.285
21 H -0.295 1.295
22 H -0.288 1.288
23 C 0.136 3.864
24 C 0.067 3.933
25 O -0.577 6.577
26 C -0.125 4.125
27 C 0.121 3.879
28 C -0.039 4.039
29 H 0.043 0.957
30 H 0.061 0.939
31 H 0.075 0.925
32 H 0.099 0.901
33 H 0.075 0.925
34 H 0.190 0.810
35 H 0.179 0.821
36 H 0.094 0.906
37 H 0.104 0.896
38 H 0.061 0.939
39 H 0.032 0.968
40 H 0.074 0.926
41 H 0.246 0.754
42 H 0.064 0.936
43 H 0.052 0.948
44 H 0.045 0.955
45 H 0.041 0.959
46 H 0.373 0.627
47 H 0.070 0.930
48 H 0.032 0.968
49 H 0.096 0.904
50 H 0.078 0.922
51 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.328 1.911 -6.699 17.752
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.117 4.117
3 C -0.134 4.134
4 C -0.039 4.039
5 N -0.204 5.204
6 C -0.035 4.035
7 C -0.193 4.193
8 C 0.351 3.649
9 O -0.458 6.458
10 N -0.324 5.324
11 C -0.018 4.018
12 C -0.164 4.164
13 C 0.066 3.934
14 N -0.302 5.302
15 C -0.354 4.354
16 H 0.056 0.944
17 C -0.225 4.225
18 N -0.561 5.561
19 Si 0.765 3.235
20 H -0.211 1.211
21 H -0.222 1.222
22 H -0.215 1.215
23 C 0.010 3.990
24 C -0.012 4.012
25 O -0.382 6.382
26 C -0.165 4.165
27 C -0.001 4.001
28 C -0.066 4.066
29 H 0.062 0.938
30 H 0.080 0.920
31 H 0.094 0.906
32 H 0.117 0.883
33 H 0.094 0.906
34 H 0.207 0.793
35 H 0.196 0.804
36 H 0.112 0.888
37 H 0.122 0.878
38 H 0.080 0.920
39 H 0.051 0.949
40 H 0.092 0.908
41 H 0.055 0.945
42 H 0.081 0.919
43 H 0.070 0.930
44 H 0.063 0.937
45 H 0.059 0.941
46 H 0.220 0.780
47 H 0.089 0.911
48 H 0.051 0.949
49 H 0.114 0.886
50 H 0.096 0.904
51 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -16.352 1.858 -7.594 18.125
hybrid contribution 0.804 -0.918 2.237 2.548
sum -15.548 0.940 -5.357 16.472
Atomic orbital electron populations
1.21757 0.93705 1.02883 1.01953 1.20575 0.96794 0.89698 1.04628
1.21147 1.00163 0.99270 0.92860 1.23402 0.91822 0.89863 0.98849
1.67794 1.12555 1.09502 1.30551 1.23263 0.93522 1.00711 0.86024
1.20892 1.06595 0.97062 0.94798 1.18401 0.81291 0.78381 0.86812
1.90734 1.47660 1.65162 1.42292 1.48128 1.20242 1.48785 1.15282
1.22239 0.87787 1.03668 0.88139 1.22058 0.95181 0.99965 0.99228
1.20524 0.84692 0.96781 0.91383 1.43896 1.05712 1.05409 1.75210
1.18680 0.97586 0.90401 1.28694 0.94377 1.25320 1.00113 0.99629
0.97408 1.70103 1.12353 1.45382 1.28213 0.85863 0.77121 0.80439
0.80084 1.21133 1.22152 1.21523 1.21013 0.95421 0.90334 0.92263
1.22908 0.97638 0.91224 0.89448 1.86786 1.93612 1.40026 1.17787
1.22172 0.94170 1.00443 0.99730 1.21678 0.95947 0.97345 0.85124
1.21655 0.92736 0.92415 0.99757 0.93752 0.91970 0.90566 0.88253
0.90590 0.79296 0.80383 0.88820 0.87799 0.92037 0.94926 0.90834
0.94518 0.91851 0.92987 0.93708 0.94072 0.78042 0.91139 0.94942
0.88599 0.90364 0.84669
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.71 9.89 71.98 0.71 -1.00 16
2 C -0.08 -1.04 6.08 29.85 0.18 -0.86 16
3 C -0.13 -2.52 5.15 -19.81 -0.10 -2.63 16
4 C 0.12 2.17 10.85 84.71 0.92 3.09 16
5 N -0.50 -11.31 10.35 -194.76 -2.01 -13.33 16
6 C 0.12 2.85 8.51 85.02 0.72 3.57 16
7 C -0.19 -5.05 5.20 -19.99 -0.10 -5.16 16
8 C 0.56 17.59 7.33 86.79 0.64 18.23 16
9 O -0.58 -21.60 16.42 -3.87 -0.06 -21.67 16
10 N -0.59 -17.06 2.98 -823.14 -2.45 -19.52 16
11 C 0.10 2.70 5.16 86.22 0.45 3.15 16
12 C -0.12 -4.43 5.29 30.53 0.16 -4.26 16
13 C 0.17 6.33 2.60 45.02 0.12 6.44 16
14 N -0.58 -26.80 2.35 -677.89 -1.59 -28.40 16
15 C -0.22 -11.99 7.96 84.03 0.67 -11.32 16
16 H 0.04 2.17 6.89 -2.91 -0.02 2.15 16
17 C -0.03 -1.58 4.85 84.86 0.41 -1.17 16
18 N -0.91 -53.03 11.51 21.65 0.25 -52.78 16
19 Si 0.93 46.77 29.62 68.60 2.03 48.80 16
20 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16
21 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16
22 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16
23 C 0.14 5.98 5.61 86.38 0.48 6.46 16
24 C 0.07 2.43 7.39 71.98 0.53 2.97 16
25 O -0.58 -23.28 13.33 -148.98 -1.99 -25.26 16
26 C -0.13 -4.31 5.30 30.67 0.16 -4.15 16
27 C 0.12 3.44 6.43 86.36 0.56 4.00 16
28 C -0.04 -0.97 9.52 22.73 0.22 -0.75 16
29 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16
30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
32 H 0.10 0.92 8.09 -2.39 -0.02 0.90 16
33 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16
34 H 0.19 2.18 8.06 -2.91 -0.02 2.15 16
35 H 0.18 3.43 6.55 -2.91 -0.02 3.41 16
36 H 0.09 2.32 4.25 -2.39 -0.01 2.31 16
37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16
38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16
39 H 0.03 1.39 7.71 -2.39 -0.02 1.38 16
40 H 0.07 2.34 7.85 -2.39 -0.02 2.32 16
41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16
42 H 0.06 3.37 5.44 -2.39 -0.01 3.36 16
43 H 0.05 2.06 8.01 -2.39 -0.02 2.04 16
44 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16
45 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16
46 H 0.37 10.67 9.12 -74.05 -0.68 9.99 16
47 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16
48 H 0.03 1.34 7.03 -2.39 -0.02 1.32 16
49 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16
50 H 0.08 2.39 7.02 -2.39 -0.02 2.37 16
51 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16
Total: -1.00 -73.03 404.74 1.16 -71.88
By element:
Atomic # 1 Polarization: 23.38 SS G_CDS: 0.26 Total: 23.65 kcal
Atomic # 6 Polarization: 9.91 SS G_CDS: 6.72 Total: 16.63 kcal
Atomic # 7 Polarization: -108.21 SS G_CDS: -5.81 Total: -114.02 kcal
Atomic # 8 Polarization: -44.88 SS G_CDS: -2.05 Total: -46.93 kcal
Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal
Total: -73.03 1.16 -71.88 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098428586.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.430 kcal
(2) G-P(sol) polarization free energy of solvation -73.033 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.446 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds