Wall clock time and date at job start Wed Apr 1 2020 04:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47352 * 2 1 4 4 C 1.38020 * 119.51394 * 125.00022 * 3 2 1 5 5 C 1.39926 * 119.13297 * 180.02562 * 4 3 2 6 6 C 1.48165 * 120.89051 * 179.97438 * 5 4 3 7 7 O 1.21517 * 120.00015 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99703 * 180.02562 * 6 5 4 9 9 C 1.46508 * 119.99579 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46707 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.47125 * 179.97438 * 10 9 8 12 12 H 1.09000 * 110.63496 * 51.85936 * 11 10 9 13 13 C 1.54335 * 111.00070 * 288.78390 * 11 10 9 14 14 N 1.47022 * 107.26195 * 219.59791 * 13 11 10 15 15 C 1.36935 * 125.64427 * 178.84992 * 14 13 11 16 16 H 1.08000 * 120.00518 * 359.44761 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.71412 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47361 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46860 * 120.00310 * 19 17 15 22 22 H 1.48500 * 109.47264 * 240.00123 * 19 17 15 23 23 C 1.47426 * 108.70625 * 358.58545 * 14 13 11 24 24 C 1.54912 * 104.82994 * 24.35934 * 23 14 13 25 25 H 1.08995 * 111.00742 * 81.05954 * 24 23 14 26 26 C 1.52998 * 111.00086 * 204.87731 * 24 23 14 27 27 C 1.39606 * 118.21747 * 0.25433 * 5 4 3 28 28 C 1.38854 * 118.94870 * 359.50026 * 27 5 4 29 29 O 1.35685 * 119.62272 * 180.25322 * 28 27 5 30 30 N 1.31884 * 119.51202 * 305.02180 * 3 2 1 31 31 H 1.08992 * 109.47154 * 300.00537 * 1 2 3 32 32 H 1.09002 * 109.46761 * 59.99776 * 1 2 3 33 33 H 1.08996 * 109.47097 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46753 * 239.99917 * 2 1 3 35 35 H 1.09002 * 109.46761 * 120.00224 * 2 1 3 36 36 H 1.08005 * 120.42968 * 0.02562 * 4 3 2 37 37 H 0.96996 * 120.00291 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.46669 * 60.00382 * 9 8 6 39 39 H 1.08993 * 109.46871 * 299.99995 * 9 8 6 40 40 H 1.09009 * 109.47210 * 60.00549 * 10 9 8 41 41 H 1.09003 * 109.47538 * 300.00244 * 10 9 8 42 42 H 1.09007 * 109.99076 * 100.12594 * 13 11 10 43 43 H 1.09002 * 109.78210 * 338.95588 * 13 11 10 44 44 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 45 45 H 1.08998 * 110.36404 * 143.19245 * 23 14 13 46 46 H 1.08995 * 110.36566 * 265.51629 * 23 14 13 47 47 H 1.08996 * 109.47303 * 58.54471 * 26 24 23 48 48 H 1.09006 * 109.46537 * 178.54319 * 26 24 23 49 49 H 1.08996 * 109.47165 * 298.54472 * 26 24 23 50 50 H 1.07997 * 120.52714 * 179.72762 * 27 5 4 51 51 H 0.96697 * 113.99612 * 270.25121 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9086 1.8321 0.9839 5 6 3.3696 3.1532 0.9766 6 6 4.3104 3.6364 2.0143 7 8 4.6923 2.8818 2.8869 8 7 4.7426 4.9127 1.9903 9 6 5.6724 5.3906 3.0168 10 6 6.0021 6.8625 2.7606 11 6 6.9727 7.3618 3.8329 12 1 7.8338 6.6981 3.9106 13 6 6.2670 7.4946 5.1990 14 7 6.7733 8.7199 5.8344 15 6 6.3800 9.2089 7.0515 16 1 5.6294 8.6868 7.6263 17 6 6.9421 10.3787 7.5441 18 7 7.8527 11.0181 6.8411 19 14 6.4050 11.0460 9.2041 20 1 5.3761 10.1490 9.7889 21 1 7.5772 11.1130 10.1134 22 1 5.8352 12.4062 9.0300 23 6 7.7792 9.3316 4.9470 24 6 7.4249 8.8149 3.5303 25 1 6.6110 9.3947 3.0951 26 6 8.6532 8.8291 2.6182 27 6 2.9148 4.0055 -0.0312 28 6 2.0372 3.5091 -0.9860 29 8 1.5905 4.3241 -1.9746 30 7 1.6280 2.2528 -0.9399 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.2341 1.1433 1.7494 37 1 4.4375 5.5151 1.2940 38 1 6.5887 4.8015 2.9794 39 1 5.2132 5.2864 3.9997 40 1 5.0859 7.4519 2.7977 41 1 6.4614 6.9663 1.7776 42 1 6.4975 6.6310 5.8230 43 1 5.1897 7.5712 5.0519 44 1 8.2451 11.8356 7.1851 45 1 7.7064 10.4186 4.9835 46 1 8.7810 9.0080 5.2293 47 1 9.4363 8.2086 3.0537 48 1 8.3822 8.4373 1.6378 49 1 9.0161 9.8516 2.5134 50 1 3.2431 5.0337 -0.0699 51 1 0.7788 4.8011 -1.7543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103237455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:28 Heat of formation + Delta-G solvation = -32.255322 kcal Electronic energy + Delta-G solvation = -29645.152385 eV Core-core repulsion = 25544.906909 eV Total energy + Delta-G solvation = -4100.245476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.27159 -39.67235 -38.20094 -37.71037 -35.45006 -34.47499 -33.30872 -32.67687 -31.14731 -30.68971 -29.83473 -27.17011 -25.84209 -25.37588 -24.48330 -23.59909 -22.74223 -22.02093 -20.67561 -19.77620 -19.34417 -19.03137 -17.58084 -17.37716 -16.82495 -16.20363 -16.06230 -15.73396 -15.64481 -15.09197 -14.75413 -14.71616 -14.43354 -14.17513 -13.80775 -13.66792 -13.42473 -13.03739 -12.93830 -12.79301 -12.38138 -12.25990 -12.11890 -12.06098 -11.89865 -11.70898 -11.52722 -11.48850 -11.15516 -11.06772 -10.87202 -10.77475 -10.58485 -10.33455 -10.10604 -9.94299 -9.87553 -9.82001 -9.73084 -9.34642 -9.31833 -9.28336 -8.64848 -6.81509 -5.64745 -3.06121 0.22585 0.46822 2.46364 2.75065 3.01937 3.32775 3.39371 3.45103 3.47487 3.91962 4.14592 4.44398 4.47321 4.49207 4.67666 4.74273 4.86241 4.87243 4.98311 5.03794 5.22269 5.25324 5.29273 5.43600 5.46870 5.48823 5.52864 5.54719 5.62737 5.66411 5.72949 5.81870 5.87541 5.93345 5.96234 6.08285 6.18123 6.23920 6.25374 6.31090 6.54216 6.60600 6.67779 6.81572 6.96748 7.00193 7.16443 7.39893 7.55686 7.64753 7.84528 7.87362 8.37492 9.23367 9.84303 10.49572 11.39014 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.001805 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.055548 B =15507.726979 C =16119.640332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C 0.153 3.847 4 C -0.124 4.124 5 C -0.065 4.065 6 C 0.555 3.445 7 O -0.524 6.524 8 N -0.718 5.718 9 C 0.117 3.883 10 C -0.117 4.117 11 C -0.093 4.093 12 H 0.073 0.927 13 C 0.139 3.861 14 N -0.606 5.606 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.158 3.842 24 C -0.115 4.115 25 H 0.068 0.932 26 C -0.133 4.133 27 C -0.163 4.163 28 C 0.314 3.686 29 O -0.479 6.479 30 N -0.486 5.486 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.153 0.847 37 H 0.400 0.600 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.020 0.980 43 H 0.022 0.978 44 H 0.251 0.749 45 H 0.105 0.895 46 H 0.011 0.989 47 H 0.050 0.950 48 H 0.042 0.958 49 H 0.053 0.947 50 H 0.146 0.854 51 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.589 -16.694 -18.441 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C 0.015 3.985 4 C -0.145 4.145 5 C -0.076 4.076 6 C 0.340 3.660 7 O -0.401 6.401 8 N -0.369 5.369 9 C -0.006 4.006 10 C -0.155 4.155 11 C -0.112 4.112 12 H 0.091 0.909 13 C 0.013 3.987 14 N -0.331 5.331 15 C -0.349 4.349 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.034 3.966 24 C -0.134 4.134 25 H 0.086 0.914 26 C -0.191 4.191 27 C -0.185 4.185 28 C 0.135 3.865 29 O -0.286 6.286 30 N -0.206 5.206 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.171 0.829 37 H 0.235 0.765 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.037 0.963 43 H 0.040 0.960 44 H 0.062 0.938 45 H 0.122 0.878 46 H 0.029 0.971 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.164 0.836 51 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -11.337 -17.472 -18.579 27.910 hybrid contribution -0.167 1.264 1.288 1.813 sum -11.504 -16.207 -17.291 26.344 Atomic orbital electron populations 1.21684 0.93783 1.02055 1.02714 1.20567 0.97315 0.89586 1.03796 1.21029 0.92559 0.95934 0.88932 1.22167 0.96764 0.95583 1.00003 1.20329 0.97284 0.94599 0.95353 1.18086 0.80920 0.82407 0.84586 1.90813 1.57308 1.55244 1.36702 1.46001 1.47827 1.11398 1.31701 1.21609 0.92640 0.95235 0.91110 1.21803 1.00410 0.93520 0.99773 1.22150 0.97295 0.97303 0.94465 0.90873 1.21374 0.95729 0.90339 0.91219 1.44511 1.45883 1.23554 1.19170 1.19135 1.17731 1.04873 0.93128 0.90503 1.24789 0.99014 0.98045 0.98993 1.69812 1.30924 1.19154 1.37223 0.86009 0.77686 0.78624 0.83266 1.20547 1.21773 1.21782 1.21968 0.90309 1.01126 0.83240 1.22631 0.97059 0.94739 0.99003 0.91381 1.21635 0.97864 1.01446 0.98162 1.22298 1.00525 1.01467 0.94160 1.18936 0.93304 0.87266 0.86967 1.84810 1.46846 1.58078 1.38887 1.66784 1.25603 1.04010 1.24215 0.92749 0.91567 0.92021 0.89515 0.89630 0.82937 0.76473 0.91060 0.90558 0.91112 0.91461 0.96255 0.96029 0.93837 0.87750 0.97058 0.93066 0.93872 0.92774 0.83650 0.73900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.77 37.16 0.36 -0.47 16 2 C -0.07 -0.46 6.33 -27.88 -0.18 -0.63 16 3 C 0.15 1.33 6.18 -82.65 -0.51 0.82 16 4 C -0.12 -1.15 9.27 -39.03 -0.36 -1.51 16 5 C -0.06 -0.63 5.91 -104.68 -0.62 -1.25 16 6 C 0.55 6.57 7.80 -12.18 -0.10 6.48 16 7 O -0.52 -8.09 16.44 5.35 0.09 -8.00 16 8 N -0.72 -7.27 5.51 -61.15 -0.34 -7.61 16 9 C 0.12 1.40 5.56 -4.04 -0.02 1.38 16 10 C -0.12 -1.41 4.74 -26.73 -0.13 -1.54 16 11 C -0.09 -1.50 2.38 -88.77 -0.21 -1.71 16 12 H 0.07 1.17 8.02 -51.93 -0.42 0.75 16 13 C 0.14 2.85 6.25 -3.06 -0.02 2.83 16 14 N -0.61 -15.47 3.39 -170.06 -0.58 -16.05 16 15 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 18 N -0.92 -26.88 10.09 55.49 0.56 -26.32 16 19 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C 0.16 3.78 5.36 -2.53 -0.01 3.77 16 24 C -0.11 -2.05 3.09 -88.47 -0.27 -2.32 16 25 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 26 C -0.13 -1.99 9.30 37.16 0.35 -1.64 16 27 C -0.16 -1.31 9.55 -38.84 -0.37 -1.68 16 28 C 0.31 2.78 7.74 -17.16 -0.13 2.65 16 29 O -0.48 -3.50 13.56 -18.76 -0.25 -3.76 16 30 N -0.49 -4.73 9.87 -9.60 -0.09 -4.83 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.45 7.94 -51.93 -0.41 0.04 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.39 7.86 -51.93 -0.41 -0.02 16 36 H 0.15 1.31 7.62 -52.48 -0.40 0.91 16 37 H 0.40 2.93 6.61 -40.82 -0.27 2.66 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 40 H 0.07 0.86 7.95 -51.92 -0.41 0.44 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 43 H 0.02 0.44 7.70 -51.93 -0.40 0.04 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.10 2.83 5.87 -51.93 -0.31 2.52 16 46 H 0.01 0.29 8.04 -51.93 -0.42 -0.12 16 47 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.15 0.82 6.53 -52.49 -0.34 0.47 16 51 H 0.40 0.96 9.06 45.56 0.41 1.37 16 LS Contribution 413.04 15.07 6.22 6.22 Total: -1.00 -34.66 413.04 -9.43 -44.08 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.54 Total: 0.75 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.47 Total: -1.64 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.45 Total: -54.80 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.17 Total: -11.76 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.66 -9.43 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103237455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.826 kcal (2) G-P(sol) polarization free energy of solvation -34.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds