Wall clock time and date at job start Wed Apr 1 2020 04:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47352 * 2 1 4 4 C 1.38020 * 119.51394 * 125.00022 * 3 2 1 5 5 C 1.39926 * 119.13297 * 180.02562 * 4 3 2 6 6 C 1.48165 * 120.89051 * 179.97438 * 5 4 3 7 7 O 1.21517 * 120.00015 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99703 * 180.02562 * 6 5 4 9 9 C 1.46508 * 119.99579 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.46707 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.47125 * 179.97438 * 10 9 8 12 12 H 1.09000 * 110.63496 * 51.85936 * 11 10 9 13 13 C 1.54335 * 111.00070 * 288.78390 * 11 10 9 14 14 N 1.47022 * 107.26195 * 219.59791 * 13 11 10 15 15 C 1.36935 * 125.64427 * 178.84992 * 14 13 11 16 16 H 1.08000 * 120.00518 * 359.44761 * 15 14 13 17 17 C 1.38817 * 119.99990 * 179.71412 * 15 14 13 18 18 N 1.31617 * 119.99869 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99909 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47361 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46860 * 120.00310 * 19 17 15 22 22 H 1.48500 * 109.47264 * 240.00123 * 19 17 15 23 23 C 1.47426 * 108.70625 * 358.58545 * 14 13 11 24 24 C 1.54912 * 104.82994 * 24.35934 * 23 14 13 25 25 H 1.08995 * 111.00742 * 81.05954 * 24 23 14 26 26 C 1.52998 * 111.00086 * 204.87731 * 24 23 14 27 27 C 1.39606 * 118.21747 * 0.25433 * 5 4 3 28 28 C 1.38854 * 118.94870 * 359.50026 * 27 5 4 29 29 O 1.35685 * 119.62272 * 180.25322 * 28 27 5 30 30 N 1.31884 * 119.51202 * 305.02180 * 3 2 1 31 31 H 1.08992 * 109.47154 * 300.00537 * 1 2 3 32 32 H 1.09002 * 109.46761 * 59.99776 * 1 2 3 33 33 H 1.08996 * 109.47097 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46753 * 239.99917 * 2 1 3 35 35 H 1.09002 * 109.46761 * 120.00224 * 2 1 3 36 36 H 1.08005 * 120.42968 * 0.02562 * 4 3 2 37 37 H 0.96996 * 120.00291 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.46669 * 60.00382 * 9 8 6 39 39 H 1.08993 * 109.46871 * 299.99995 * 9 8 6 40 40 H 1.09009 * 109.47210 * 60.00549 * 10 9 8 41 41 H 1.09003 * 109.47538 * 300.00244 * 10 9 8 42 42 H 1.09007 * 109.99076 * 100.12594 * 13 11 10 43 43 H 1.09002 * 109.78210 * 338.95588 * 13 11 10 44 44 H 0.96996 * 119.99743 * 179.97438 * 18 17 15 45 45 H 1.08998 * 110.36404 * 143.19245 * 23 14 13 46 46 H 1.08995 * 110.36566 * 265.51629 * 23 14 13 47 47 H 1.08996 * 109.47303 * 58.54471 * 26 24 23 48 48 H 1.09006 * 109.46537 * 178.54319 * 26 24 23 49 49 H 1.08996 * 109.47165 * 298.54472 * 26 24 23 50 50 H 1.07997 * 120.52714 * 179.72762 * 27 5 4 51 51 H 0.96697 * 113.99612 * 270.25121 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9086 1.8321 0.9839 5 6 3.3696 3.1532 0.9766 6 6 4.3104 3.6364 2.0143 7 8 4.6923 2.8818 2.8869 8 7 4.7426 4.9127 1.9903 9 6 5.6724 5.3906 3.0168 10 6 6.0021 6.8625 2.7606 11 6 6.9727 7.3618 3.8329 12 1 7.8338 6.6981 3.9106 13 6 6.2670 7.4946 5.1990 14 7 6.7733 8.7199 5.8344 15 6 6.3800 9.2089 7.0515 16 1 5.6294 8.6868 7.6263 17 6 6.9421 10.3787 7.5441 18 7 7.8527 11.0181 6.8411 19 14 6.4050 11.0460 9.2041 20 1 5.3761 10.1490 9.7889 21 1 7.5772 11.1130 10.1134 22 1 5.8352 12.4062 9.0300 23 6 7.7792 9.3316 4.9470 24 6 7.4249 8.8149 3.5303 25 1 6.6110 9.3947 3.0951 26 6 8.6532 8.8291 2.6182 27 6 2.9148 4.0055 -0.0312 28 6 2.0372 3.5091 -0.9860 29 8 1.5905 4.3241 -1.9746 30 7 1.6280 2.2528 -0.9399 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.2341 1.1433 1.7494 37 1 4.4375 5.5151 1.2940 38 1 6.5887 4.8015 2.9794 39 1 5.2132 5.2864 3.9997 40 1 5.0859 7.4519 2.7977 41 1 6.4614 6.9663 1.7776 42 1 6.4975 6.6310 5.8230 43 1 5.1897 7.5712 5.0519 44 1 8.2451 11.8356 7.1851 45 1 7.7064 10.4186 4.9835 46 1 8.7810 9.0080 5.2293 47 1 9.4363 8.2086 3.0537 48 1 8.3822 8.4373 1.6378 49 1 9.0161 9.8516 2.5134 50 1 3.2431 5.0337 -0.0699 51 1 0.7788 4.8011 -1.7543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103237455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:27 Heat of formation + Delta-G solvation = -58.009043 kcal Electronic energy + Delta-G solvation = -29646.269150 eV Core-core repulsion = 25544.906909 eV Total energy + Delta-G solvation = -4101.362241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.96480 -40.56604 -39.69749 -38.28772 -36.58885 -35.25435 -34.84745 -33.40096 -32.54016 -32.30250 -30.45008 -28.60988 -27.50298 -26.33027 -25.56747 -24.59063 -23.54935 -23.18070 -21.60307 -21.30025 -20.64723 -19.78079 -18.87537 -18.30264 -18.04740 -17.17601 -16.84280 -16.71261 -16.64076 -16.37992 -16.00803 -15.59892 -15.33160 -15.26085 -14.99788 -14.84365 -14.58449 -14.21049 -14.08663 -13.69867 -13.50938 -13.48554 -13.36546 -12.91502 -12.86876 -12.78619 -12.77044 -12.73852 -12.41188 -12.38519 -12.20413 -11.95207 -11.93711 -11.79590 -11.55954 -11.38169 -11.25396 -11.05741 -10.98308 -10.74987 -10.53649 -10.21161 -9.92622 -8.87016 -7.77603 -5.21865 -0.48703 -0.14534 1.44659 1.45521 1.55940 1.66241 1.89619 2.42544 2.48474 2.66012 3.30368 3.32095 3.45442 3.69311 3.74165 3.83095 3.85955 3.91698 4.07142 4.12708 4.22481 4.26465 4.33858 4.40531 4.44060 4.52033 4.63924 4.66205 4.73052 4.78767 4.79733 4.84235 4.90763 5.01679 5.02567 5.07060 5.12151 5.18283 5.18866 5.26183 5.30246 5.33654 5.41663 5.45959 5.46560 5.55785 5.77558 5.86404 6.32871 6.35275 6.55015 6.81181 7.00403 7.11856 7.79989 8.43662 9.23748 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.001805 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.055548 B =15507.726979 C =16119.640332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 C 0.150 3.850 4 C -0.133 4.133 5 C -0.075 4.075 6 C 0.555 3.445 7 O -0.567 6.567 8 N -0.703 5.703 9 C 0.123 3.877 10 C -0.101 4.101 11 C -0.079 4.079 12 H 0.077 0.923 13 C 0.133 3.867 14 N -0.630 5.630 15 C -0.238 4.238 16 H 0.077 0.923 17 C -0.069 4.069 18 N -0.948 5.948 19 Si 0.979 3.021 20 H -0.269 1.269 21 H -0.293 1.293 22 H -0.289 1.289 23 C 0.159 3.841 24 C -0.100 4.100 25 H 0.073 0.927 26 C -0.127 4.127 27 C -0.153 4.153 28 C 0.310 3.690 29 O -0.486 6.486 30 N -0.504 5.504 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.153 0.847 37 H 0.417 0.583 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.011 0.989 43 H 0.027 0.973 44 H 0.246 0.754 45 H 0.068 0.932 46 H -0.019 1.019 47 H 0.047 0.953 48 H 0.081 0.919 49 H 0.049 0.951 50 H 0.172 0.828 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.664 -17.281 -20.472 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C 0.012 3.988 4 C -0.154 4.154 5 C -0.086 4.086 6 C 0.342 3.658 7 O -0.447 6.447 8 N -0.355 5.355 9 C -0.001 4.001 10 C -0.139 4.139 11 C -0.098 4.098 12 H 0.096 0.904 13 C 0.008 3.992 14 N -0.355 5.355 15 C -0.367 4.367 16 H 0.095 0.905 17 C -0.261 4.261 18 N -0.598 5.598 19 Si 0.807 3.193 20 H -0.193 1.193 21 H -0.220 1.220 22 H -0.216 1.216 23 C 0.034 3.966 24 C -0.120 4.120 25 H 0.091 0.909 26 C -0.185 4.185 27 C -0.175 4.175 28 C 0.131 3.869 29 O -0.296 6.296 30 N -0.224 5.224 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.170 0.830 37 H 0.255 0.745 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.029 0.971 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.086 0.914 46 H -0.001 1.001 47 H 0.066 0.934 48 H 0.100 0.900 49 H 0.068 0.932 50 H 0.190 0.810 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -12.451 -18.048 -20.651 30.120 hybrid contribution 0.131 1.440 1.911 2.396 sum -12.320 -16.608 -18.741 27.908 Atomic orbital electron populations 1.21648 0.93528 1.02810 1.01843 1.20677 0.97467 0.88392 1.04817 1.21344 0.92188 0.96812 0.88413 1.22269 0.97113 0.95693 1.00322 1.20205 0.97645 0.95192 0.95585 1.18372 0.80685 0.82382 0.84350 1.90792 1.58972 1.56427 1.38506 1.45802 1.47020 1.11194 1.31509 1.21396 0.92680 0.95287 0.90699 1.21653 0.99723 0.93053 0.99499 1.22051 0.98040 0.96506 0.93210 0.90441 1.21589 0.96340 0.88015 0.93259 1.44861 1.46221 1.25389 1.19061 1.19483 1.17685 1.05114 0.94460 0.90532 1.25629 0.99450 0.98524 1.02532 1.70076 1.31899 1.19242 1.38549 0.85001 0.77275 0.77901 0.79108 1.19303 1.21998 1.21567 1.21786 0.88789 0.99105 0.86914 1.22469 0.98632 0.95276 0.95624 0.90888 1.21598 0.96153 1.01573 0.99147 1.22456 0.99626 1.02320 0.93062 1.19109 0.93358 0.87280 0.87174 1.84767 1.48224 1.58024 1.38600 1.66844 1.26167 1.04687 1.24744 0.93252 0.92727 0.90469 0.88909 0.88165 0.82956 0.74506 0.91375 0.92694 0.90500 0.88211 0.97100 0.95479 0.94384 0.91382 1.00079 0.93392 0.90021 0.93160 0.81043 0.71524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.77 71.98 0.70 -0.76 16 2 C -0.08 -0.83 6.33 29.85 0.19 -0.64 16 3 C 0.15 2.44 6.18 42.50 0.26 2.70 16 4 C -0.13 -2.36 9.27 22.63 0.21 -2.15 16 5 C -0.08 -1.36 5.91 -19.90 -0.12 -1.48 16 6 C 0.56 12.44 7.80 86.88 0.68 13.12 16 7 O -0.57 -17.41 16.44 -3.77 -0.06 -17.48 16 8 N -0.70 -12.47 5.51 -465.66 -2.57 -15.04 16 9 C 0.12 2.68 5.56 86.38 0.48 3.17 16 10 C -0.10 -2.10 4.74 30.59 0.14 -1.95 16 11 C -0.08 -2.40 2.38 -9.60 -0.02 -2.43 16 12 H 0.08 2.33 8.02 -2.39 -0.02 2.31 16 13 C 0.13 5.43 6.25 86.73 0.54 5.97 16 14 N -0.63 -32.89 3.39 -691.95 -2.35 -35.24 16 15 C -0.24 -13.65 10.27 84.04 0.86 -12.79 16 16 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 17 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 18 N -0.95 -57.09 10.09 21.65 0.22 -56.87 16 19 Si 0.98 46.36 29.55 68.60 2.03 48.38 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 C 0.16 7.80 5.36 86.86 0.47 8.27 16 24 C -0.10 -3.45 3.09 -9.40 -0.03 -3.48 16 25 H 0.07 2.46 8.05 -2.39 -0.02 2.44 16 26 C -0.13 -3.47 9.30 71.98 0.67 -2.80 16 27 C -0.15 -2.09 9.55 22.75 0.22 -1.87 16 28 C 0.31 4.85 7.74 84.78 0.66 5.51 16 29 O -0.49 -5.93 13.56 -90.04 -1.22 -7.15 16 30 N -0.50 -9.13 9.87 -297.16 -2.93 -12.06 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.69 7.94 -2.39 -0.02 0.68 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.79 7.86 -2.39 -0.02 0.77 16 36 H 0.15 2.61 7.62 -2.91 -0.02 2.59 16 37 H 0.42 4.53 6.61 -92.71 -0.61 3.92 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.46 7.69 -2.39 -0.02 1.44 16 40 H 0.08 1.57 7.95 -2.38 -0.02 1.55 16 41 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.03 1.08 7.70 -2.39 -0.02 1.06 16 44 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.07 3.84 5.87 -2.39 -0.01 3.83 16 46 H -0.02 -1.01 8.04 -2.39 -0.02 -1.03 16 47 H 0.05 1.34 8.11 -2.39 -0.02 1.32 16 48 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 49 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.17 1.28 6.53 -2.91 -0.02 1.26 16 51 H 0.42 0.97 9.06 -74.06 -0.67 0.30 16 Total: -1.00 -78.34 413.04 -0.85 -79.18 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -0.34 Total: 11.39 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.38 Total: 4.87 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -7.63 Total: -119.20 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.28 Total: -24.63 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -78.34 -0.85 -79.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103237455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.175 kcal (2) G-P(sol) polarization free energy of solvation -78.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds