Wall clock time and date at job start Wed Apr 1 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.46803 * 2 1 4 4 C 1.38355 * 120.27011 * 270.01957 * 3 2 1 5 5 N 1.31882 * 121.18413 * 179.97438 * 4 3 2 6 6 C 1.32234 * 121.80275 * 359.74518 * 5 4 3 7 7 O 1.35427 * 119.80286 * 180.29071 * 6 5 4 8 8 C 1.40285 * 120.39804 * 0.54499 * 6 5 4 9 9 C 1.47517 * 120.59857 * 179.72418 * 8 6 5 10 10 O 1.21593 * 119.99874 * 359.72040 * 9 8 6 11 11 N 1.34780 * 120.00399 * 179.72384 * 9 8 6 12 12 C 1.46497 * 120.00316 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46857 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47006 * 179.97438 * 13 12 11 15 15 H 1.09005 * 110.63590 * 51.85907 * 14 13 12 16 16 C 1.54337 * 111.00569 * 288.78250 * 14 13 12 17 17 N 1.47015 * 107.26507 * 219.59972 * 16 14 13 18 18 C 1.36937 * 125.64768 * 178.84634 * 17 16 14 19 19 H 1.07996 * 119.99824 * 340.94235 * 18 17 16 20 20 C 1.38807 * 120.00250 * 161.21713 * 18 17 16 21 21 N 1.31620 * 120.00450 * 157.60272 * 20 18 17 22 22 Si 1.86801 * 119.99892 * 337.60961 * 20 18 17 23 23 H 1.48500 * 109.47209 * 84.53337 * 22 20 18 24 24 H 1.48506 * 109.47109 * 204.53340 * 22 20 18 25 25 H 1.48497 * 109.47176 * 324.53007 * 22 20 18 26 26 C 1.47427 * 108.70568 * 358.58089 * 17 16 14 27 27 C 1.54914 * 104.83009 * 24.35900 * 26 17 16 28 28 H 1.09007 * 111.00378 * 81.06227 * 27 26 17 29 29 C 1.52998 * 111.00145 * 204.87596 * 27 26 17 30 30 C 1.38337 * 120.27021 * 90.00818 * 3 2 1 31 31 H 1.08995 * 109.47081 * 59.99748 * 1 2 3 32 32 H 1.09001 * 109.46970 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46766 * 299.99952 * 1 2 3 34 34 H 1.09001 * 109.46766 * 240.00048 * 2 1 3 35 35 H 1.08995 * 109.47081 * 120.00252 * 2 1 3 36 36 H 1.07998 * 119.40872 * 359.97438 * 4 3 2 37 37 H 0.96697 * 113.99931 * 270.24988 * 7 6 5 38 38 H 0.97004 * 119.99395 * 359.97438 * 11 9 8 39 39 H 1.08994 * 109.46946 * 59.99649 * 12 11 9 40 40 H 1.09002 * 109.46746 * 299.99680 * 12 11 9 41 41 H 1.08994 * 109.47558 * 60.00110 * 13 12 11 42 42 H 1.09002 * 109.47253 * 299.99457 * 13 12 11 43 43 H 1.08994 * 109.98977 * 100.12069 * 16 14 13 44 44 H 1.08996 * 109.77507 * 338.95612 * 16 14 13 45 45 H 0.97000 * 120.00315 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.36487 * 143.19046 * 26 17 16 47 47 H 1.08995 * 110.37008 * 265.51818 * 26 17 16 48 48 H 1.08995 * 109.47287 * 58.54469 * 29 27 26 49 49 H 1.08999 * 109.47052 * 178.54557 * 29 27 26 50 50 H 1.08997 * 109.46887 * 298.54352 * 29 27 26 51 51 H 1.08000 * 120.82600 * 0.03308 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2643 2.0785 -1.1949 5 7 2.7033 3.3219 -1.2160 6 6 2.9367 3.9975 -0.1034 7 8 3.3815 5.2748 -0.1723 8 6 2.7313 3.3973 1.1478 9 6 2.9960 4.1448 2.3917 10 8 3.4008 5.2902 2.3383 11 7 2.7892 3.5583 3.5875 12 6 3.0526 4.3005 4.8228 13 6 2.7384 3.4122 6.0282 14 6 3.0141 4.1871 7.3183 15 1 2.5045 5.1506 7.3041 16 6 4.5300 4.3801 7.5346 17 7 4.7924 4.1998 8.9699 18 6 6.0207 4.2682 9.5713 19 1 6.9181 4.1605 8.9802 20 6 6.1123 4.4701 10.9416 21 7 7.1998 4.1085 11.5889 22 14 4.6921 5.2550 11.8670 23 1 3.6955 4.2124 12.2209 24 1 5.2019 5.8937 13.1069 25 1 4.0498 6.2827 11.0088 26 6 3.5134 3.9397 9.6553 27 6 2.5867 3.3584 8.5584 28 1 2.7812 2.2969 8.4049 29 6 1.1149 3.5995 8.8997 30 6 2.2649 2.0782 1.1948 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.0827 1.5644 -2.1272 37 1 4.3449 5.3550 -0.1947 38 1 2.4660 2.6447 3.6301 39 1 2.4234 5.1899 4.8534 40 1 4.1013 4.5961 4.8523 41 1 3.3673 2.5226 5.9978 42 1 1.6896 3.1170 5.9984 43 1 4.8256 5.3830 7.2267 44 1 5.0821 3.6360 6.9605 45 1 7.2640 4.2500 12.5464 46 1 3.6533 3.2146 10.4571 47 1 3.0988 4.8674 10.0497 48 1 0.9371 4.6696 9.0058 49 1 0.4873 3.2045 8.1008 50 1 0.8717 3.0962 9.8354 51 1 2.0915 1.5858 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103593653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:15 Heat of formation + Delta-G solvation = -30.292143 kcal Electronic energy + Delta-G solvation = -30095.250484 eV Core-core repulsion = 25995.090138 eV Total energy + Delta-G solvation = -4100.160346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.29702 -39.44137 -38.49057 -37.68544 -35.39229 -34.74307 -33.51414 -32.84503 -31.22958 -31.10607 -29.59535 -27.52060 -25.93421 -25.31205 -24.52264 -24.13843 -22.44863 -21.83501 -20.76350 -20.38443 -19.50381 -19.20292 -17.70049 -17.63689 -16.85505 -16.44125 -15.88687 -15.65657 -15.36512 -15.13941 -14.94655 -14.59414 -14.46448 -14.09221 -13.84814 -13.66977 -13.51466 -13.43458 -13.15928 -12.97027 -12.83584 -12.56580 -12.41266 -12.23353 -11.92291 -11.88523 -11.59667 -11.57545 -11.46720 -11.34422 -10.95766 -10.87995 -10.53874 -10.40516 -10.37741 -10.14427 -9.92307 -9.86528 -9.68439 -9.41573 -9.34044 -9.14660 -8.66174 -7.01479 -5.93240 -3.23151 0.13886 0.58525 2.53734 2.82046 3.13278 3.35011 3.40059 3.48959 3.51626 3.99582 4.13440 4.23107 4.28423 4.56127 4.58257 4.70818 4.75416 4.78623 4.91450 4.92579 4.95135 5.08113 5.12777 5.22445 5.26794 5.31026 5.39284 5.40125 5.43485 5.51337 5.64722 5.67625 5.72200 5.78659 5.83525 5.92431 5.94876 6.04536 6.08964 6.11605 6.23038 6.27942 6.40449 6.56402 6.67213 6.82071 6.82867 7.12721 7.23852 7.41604 7.74506 7.96408 8.33162 8.85880 9.70911 10.20684 11.23067 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.002030 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.723986 B =13792.034865 C =14528.122769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.154 4.154 4 C 0.150 3.850 5 N -0.505 5.505 6 C 0.365 3.635 7 O -0.460 6.460 8 C -0.199 4.199 9 C 0.559 3.441 10 O -0.515 6.515 11 N -0.724 5.724 12 C 0.118 3.882 13 C -0.117 4.117 14 C -0.094 4.094 15 H 0.077 0.923 16 C 0.139 3.861 17 N -0.610 5.610 18 C -0.240 4.240 19 H 0.091 0.909 20 C 0.020 3.980 21 N -0.910 5.910 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.277 1.277 26 C 0.116 3.884 27 C -0.100 4.100 28 H 0.078 0.922 29 C -0.140 4.140 30 C -0.028 4.028 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.164 0.836 37 H 0.407 0.593 38 H 0.397 0.603 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.030 0.970 44 H 0.032 0.968 45 H 0.263 0.737 46 H 0.057 0.943 47 H 0.025 0.975 48 H 0.053 0.947 49 H 0.051 0.949 50 H 0.054 0.946 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.484 -10.009 -24.608 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.156 4.156 4 C -0.008 4.008 5 N -0.223 5.223 6 C 0.185 3.815 7 O -0.268 6.268 8 C -0.205 4.205 9 C 0.344 3.656 10 O -0.391 6.391 11 N -0.377 5.377 12 C -0.005 4.005 13 C -0.155 4.155 14 C -0.114 4.114 15 H 0.095 0.905 16 C 0.013 3.987 17 N -0.337 5.337 18 C -0.368 4.368 19 H 0.109 0.891 20 C -0.178 4.178 21 N -0.554 5.554 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.231 1.231 25 H -0.203 1.203 26 C -0.009 4.009 27 C -0.120 4.120 28 H 0.097 0.903 29 C -0.197 4.197 30 C -0.054 4.054 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.181 0.819 37 H 0.267 0.733 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.043 0.957 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.073 0.927 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.379 -8.510 -25.191 30.717 hybrid contribution -0.523 -0.350 1.489 1.617 sum -15.903 -8.859 -23.701 29.885 Atomic orbital electron populations 1.21792 0.94259 1.02262 1.02441 1.20483 0.96415 0.91018 1.03781 1.20873 1.02411 0.98665 0.93619 1.22676 0.91500 0.88701 0.97932 1.67364 1.14726 1.08755 1.31419 1.19206 0.91640 0.84358 0.86273 1.84721 1.28114 1.18657 1.95276 1.21183 1.08765 0.95670 0.94932 1.17803 0.78537 0.86320 0.82904 1.90848 1.44466 1.16846 1.86968 1.45951 1.68299 1.17590 1.05831 1.21527 1.02358 0.95010 0.81570 1.21775 1.01767 0.98797 0.93127 1.22180 0.97720 0.98598 0.92868 0.90464 1.21435 0.91899 0.98371 0.86960 1.44783 1.03079 1.83337 1.02465 1.18647 0.82724 1.43802 0.91580 0.89103 1.25000 0.96427 1.00192 0.96177 1.69843 1.28608 1.48494 1.08425 0.86974 0.82453 0.80482 0.78754 1.21234 1.23080 1.20275 1.22005 0.86637 0.97394 0.94880 1.22355 0.94418 0.99606 0.95572 0.90320 1.21710 0.95500 1.01593 1.00941 1.21632 0.92650 0.92143 0.98979 0.92389 0.91858 0.92426 0.90238 0.90352 0.81867 0.73342 0.76868 0.91192 0.90582 0.90915 0.91407 0.95206 0.94957 0.92754 0.92494 0.95733 0.92763 0.92959 0.92731 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.89 37.16 0.37 -0.14 16 2 C -0.08 -0.26 6.08 -27.88 -0.17 -0.43 16 3 C -0.15 -0.89 5.14 -104.54 -0.54 -1.43 16 4 C 0.15 1.04 10.84 -17.49 -0.19 0.85 16 5 N -0.50 -5.12 10.37 -12.98 -0.13 -5.26 16 6 C 0.37 4.05 7.77 -16.61 -0.13 3.92 16 7 O -0.46 -5.39 11.66 -39.74 -0.46 -5.85 16 8 C -0.20 -1.98 5.90 -104.69 -0.62 -2.59 16 9 C 0.56 6.70 7.77 -12.48 -0.10 6.60 16 10 O -0.52 -8.11 15.19 -16.49 -0.25 -8.36 16 11 N -0.72 -7.02 5.51 -61.36 -0.34 -7.35 16 12 C 0.12 1.34 5.56 -4.05 -0.02 1.32 16 13 C -0.12 -1.26 4.74 -26.73 -0.13 -1.38 16 14 C -0.09 -1.39 2.38 -88.78 -0.21 -1.60 16 15 H 0.08 1.12 8.02 -51.93 -0.42 0.70 16 16 C 0.14 2.68 6.25 -3.06 -0.02 2.66 16 17 N -0.61 -14.78 3.21 -170.07 -0.55 -15.33 16 18 C -0.24 -6.89 10.57 -15.06 -0.16 -7.05 16 19 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 20 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 21 N -0.91 -28.32 13.97 55.49 0.78 -27.54 16 22 Si 0.88 22.87 24.27 -169.99 -4.13 18.75 16 23 H -0.29 -7.06 6.49 56.52 0.37 -6.69 16 24 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 25 H -0.28 -7.11 6.66 56.52 0.38 -6.73 16 26 C 0.12 2.49 4.16 -2.52 -0.01 2.48 16 27 C -0.10 -1.58 3.09 -88.47 -0.27 -1.85 16 28 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 29 C -0.14 -1.80 9.30 37.16 0.35 -1.45 16 30 C -0.03 -0.19 9.31 -38.89 -0.36 -0.55 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 35 H 0.08 0.21 8.09 -51.93 -0.42 -0.21 16 36 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.41 3.15 9.06 45.56 0.41 3.56 16 38 H 0.40 2.61 6.57 -40.82 -0.27 2.34 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 41 H 0.07 0.78 7.95 -51.93 -0.41 0.36 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.03 0.61 7.70 -51.93 -0.40 0.21 16 45 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 46 H 0.06 1.32 6.64 -51.93 -0.34 0.98 16 47 H 0.03 0.56 5.47 -51.93 -0.28 0.28 16 48 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 49 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.14 0.57 6.52 -52.49 -0.34 0.23 16 LS Contribution 406.13 15.07 6.12 6.12 Total: -1.00 -36.75 406.13 -8.83 -45.57 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.56 Total: -0.61 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -2.31 Total: -0.14 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.24 Total: -55.48 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.71 Total: -14.21 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.13 Total: 18.75 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.75 -8.83 -45.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103593653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.279 kcal (2) G-P(sol) polarization free energy of solvation -36.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds