Wall clock time and date at job start Wed Apr 1 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.46803 * 2 1 4 4 C 1.38355 * 120.27011 * 270.01957 * 3 2 1 5 5 N 1.31882 * 121.18413 * 179.97438 * 4 3 2 6 6 C 1.32234 * 121.80275 * 359.74518 * 5 4 3 7 7 O 1.35427 * 119.80286 * 180.29071 * 6 5 4 8 8 C 1.40285 * 120.39804 * 0.54499 * 6 5 4 9 9 C 1.47517 * 120.59857 * 179.72418 * 8 6 5 10 10 O 1.21593 * 119.99874 * 359.72040 * 9 8 6 11 11 N 1.34780 * 120.00399 * 179.72384 * 9 8 6 12 12 C 1.46497 * 120.00316 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.46857 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47006 * 179.97438 * 13 12 11 15 15 H 1.09005 * 110.63590 * 51.85907 * 14 13 12 16 16 C 1.54337 * 111.00569 * 288.78250 * 14 13 12 17 17 N 1.47015 * 107.26507 * 219.59972 * 16 14 13 18 18 C 1.36937 * 125.64768 * 178.84634 * 17 16 14 19 19 H 1.07996 * 119.99824 * 340.94235 * 18 17 16 20 20 C 1.38807 * 120.00250 * 161.21713 * 18 17 16 21 21 N 1.31620 * 120.00450 * 157.60272 * 20 18 17 22 22 Si 1.86801 * 119.99892 * 337.60961 * 20 18 17 23 23 H 1.48500 * 109.47209 * 84.53337 * 22 20 18 24 24 H 1.48506 * 109.47109 * 204.53340 * 22 20 18 25 25 H 1.48497 * 109.47176 * 324.53007 * 22 20 18 26 26 C 1.47427 * 108.70568 * 358.58089 * 17 16 14 27 27 C 1.54914 * 104.83009 * 24.35900 * 26 17 16 28 28 H 1.09007 * 111.00378 * 81.06227 * 27 26 17 29 29 C 1.52998 * 111.00145 * 204.87596 * 27 26 17 30 30 C 1.38337 * 120.27021 * 90.00818 * 3 2 1 31 31 H 1.08995 * 109.47081 * 59.99748 * 1 2 3 32 32 H 1.09001 * 109.46970 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46766 * 299.99952 * 1 2 3 34 34 H 1.09001 * 109.46766 * 240.00048 * 2 1 3 35 35 H 1.08995 * 109.47081 * 120.00252 * 2 1 3 36 36 H 1.07998 * 119.40872 * 359.97438 * 4 3 2 37 37 H 0.96697 * 113.99931 * 270.24988 * 7 6 5 38 38 H 0.97004 * 119.99395 * 359.97438 * 11 9 8 39 39 H 1.08994 * 109.46946 * 59.99649 * 12 11 9 40 40 H 1.09002 * 109.46746 * 299.99680 * 12 11 9 41 41 H 1.08994 * 109.47558 * 60.00110 * 13 12 11 42 42 H 1.09002 * 109.47253 * 299.99457 * 13 12 11 43 43 H 1.08994 * 109.98977 * 100.12069 * 16 14 13 44 44 H 1.08996 * 109.77507 * 338.95612 * 16 14 13 45 45 H 0.97000 * 120.00315 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.36487 * 143.19046 * 26 17 16 47 47 H 1.08995 * 110.37008 * 265.51818 * 26 17 16 48 48 H 1.08995 * 109.47287 * 58.54469 * 29 27 26 49 49 H 1.08999 * 109.47052 * 178.54557 * 29 27 26 50 50 H 1.08997 * 109.46887 * 298.54352 * 29 27 26 51 51 H 1.08000 * 120.82600 * 0.03308 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2643 2.0785 -1.1949 5 7 2.7033 3.3219 -1.2160 6 6 2.9367 3.9975 -0.1034 7 8 3.3815 5.2748 -0.1723 8 6 2.7313 3.3973 1.1478 9 6 2.9960 4.1448 2.3917 10 8 3.4008 5.2902 2.3383 11 7 2.7892 3.5583 3.5875 12 6 3.0526 4.3005 4.8228 13 6 2.7384 3.4122 6.0282 14 6 3.0141 4.1871 7.3183 15 1 2.5045 5.1506 7.3041 16 6 4.5300 4.3801 7.5346 17 7 4.7924 4.1998 8.9699 18 6 6.0207 4.2682 9.5713 19 1 6.9181 4.1605 8.9802 20 6 6.1123 4.4701 10.9416 21 7 7.1998 4.1085 11.5889 22 14 4.6921 5.2550 11.8670 23 1 3.6955 4.2124 12.2209 24 1 5.2019 5.8937 13.1069 25 1 4.0498 6.2827 11.0088 26 6 3.5134 3.9397 9.6553 27 6 2.5867 3.3584 8.5584 28 1 2.7812 2.2969 8.4049 29 6 1.1149 3.5995 8.8997 30 6 2.2649 2.0782 1.1948 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.0827 1.5644 -2.1272 37 1 4.3449 5.3550 -0.1947 38 1 2.4660 2.6447 3.6301 39 1 2.4234 5.1899 4.8534 40 1 4.1013 4.5961 4.8523 41 1 3.3673 2.5226 5.9978 42 1 1.6896 3.1170 5.9984 43 1 4.8256 5.3830 7.2267 44 1 5.0821 3.6360 6.9605 45 1 7.2640 4.2500 12.5464 46 1 3.6533 3.2146 10.4571 47 1 3.0988 4.8674 10.0497 48 1 0.9371 4.6696 9.0058 49 1 0.4873 3.2045 8.1008 50 1 0.8717 3.0962 9.8354 51 1 2.0915 1.5858 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103593653.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:14 Heat of formation + Delta-G solvation = -58.719537 kcal Electronic energy + Delta-G solvation = -30096.483188 eV Core-core repulsion = 25995.090138 eV Total energy + Delta-G solvation = -4101.393050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.97766 -40.38484 -39.82377 -38.40006 -36.49953 -35.21908 -35.08245 -33.78462 -32.97069 -32.24055 -30.07834 -28.90063 -27.51842 -26.24757 -25.26773 -24.95839 -23.52080 -22.79367 -21.86257 -21.58449 -20.74310 -19.92523 -18.93572 -18.44802 -18.28123 -17.21040 -17.09243 -16.86700 -16.56751 -16.29804 -15.81234 -15.43288 -15.32437 -15.16305 -14.74620 -14.65796 -14.55826 -14.42577 -14.28851 -14.19978 -13.97301 -13.71759 -13.37813 -13.02030 -12.98498 -12.91213 -12.80563 -12.74248 -12.48468 -12.35223 -12.27582 -12.12558 -11.80986 -11.73723 -11.46129 -11.35959 -11.27066 -11.11755 -11.01232 -10.79973 -10.45361 -10.17744 -9.79339 -9.05422 -8.20680 -5.46501 -0.50778 0.02088 1.26500 1.35784 1.44710 1.76084 2.00074 2.38477 2.47571 2.74386 3.02286 3.33943 3.43934 3.59483 3.64783 3.69436 3.82755 3.82914 3.91580 4.11354 4.22202 4.28443 4.30979 4.37742 4.51453 4.55562 4.57200 4.59893 4.68565 4.70609 4.76732 4.78792 4.84464 4.93228 4.93478 5.02285 5.07479 5.12688 5.20338 5.20954 5.33042 5.34278 5.36207 5.39687 5.42973 5.51888 5.57695 5.67851 6.08118 6.42080 6.52800 6.76183 6.79123 7.14240 7.52961 8.10369 8.99490 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.002030 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.723986 B =13792.034865 C =14528.122769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C -0.142 4.142 4 C 0.147 3.853 5 N -0.530 5.530 6 C 0.340 3.660 7 O -0.483 6.483 8 C -0.214 4.214 9 C 0.556 3.444 10 O -0.564 6.564 11 N -0.707 5.707 12 C 0.123 3.877 13 C -0.101 4.101 14 C -0.081 4.081 15 H 0.083 0.917 16 C 0.131 3.869 17 N -0.631 5.631 18 C -0.236 4.236 19 H 0.056 0.944 20 C -0.039 4.039 21 N -0.957 5.957 22 Si 0.948 3.052 23 H -0.266 1.266 24 H -0.308 1.308 25 H -0.274 1.274 26 C 0.105 3.895 27 C -0.086 4.086 28 H 0.090 0.910 29 C -0.136 4.136 30 C -0.021 4.021 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.193 0.807 37 H 0.415 0.585 38 H 0.415 0.585 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.017 0.983 44 H 0.034 0.966 45 H 0.262 0.738 46 H 0.036 0.964 47 H 0.019 0.981 48 H 0.051 0.949 49 H 0.088 0.912 50 H 0.056 0.944 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.307 -12.578 -25.750 34.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.144 4.144 4 C -0.011 4.011 5 N -0.249 5.249 6 C 0.161 3.839 7 O -0.292 6.292 8 C -0.220 4.220 9 C 0.343 3.657 10 O -0.443 6.443 11 N -0.360 5.360 12 C -0.001 4.001 13 C -0.139 4.139 14 C -0.100 4.100 15 H 0.102 0.898 16 C 0.007 3.993 17 N -0.357 5.357 18 C -0.364 4.364 19 H 0.074 0.926 20 C -0.233 4.233 21 N -0.604 5.604 22 Si 0.776 3.224 23 H -0.191 1.191 24 H -0.236 1.236 25 H -0.200 1.200 26 C -0.020 4.020 27 C -0.106 4.106 28 H 0.108 0.892 29 C -0.193 4.193 30 C -0.046 4.046 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.210 0.790 37 H 0.276 0.724 38 H 0.253 0.747 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.035 0.965 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.036 0.964 48 H 0.070 0.930 49 H 0.107 0.893 50 H 0.075 0.925 51 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.255 -11.126 -26.356 34.484 hybrid contribution 0.729 0.356 1.705 1.888 sum -18.526 -10.771 -24.651 32.663 Atomic orbital electron populations 1.21800 0.94143 1.02831 1.02044 1.20565 0.96286 0.89154 1.05308 1.21184 1.00708 0.99736 0.92729 1.23286 0.90192 0.87758 0.99843 1.67364 1.15904 1.10262 1.31358 1.19426 0.92915 0.84388 0.87199 1.84669 1.29139 1.19976 1.95455 1.21041 1.10644 0.96971 0.93373 1.18159 0.77663 0.85887 0.83955 1.90821 1.46789 1.19042 1.87672 1.45728 1.67452 1.18228 1.04640 1.21350 1.00766 0.95365 0.82627 1.21652 1.04181 0.97890 0.90128 1.22112 0.93623 0.99629 0.94667 0.89818 1.21656 0.95878 0.97618 0.84174 1.44947 1.02658 1.83447 1.04653 1.18604 0.83954 1.42325 0.91565 0.92602 1.25649 0.99234 1.01237 0.97212 1.69967 1.31116 1.50578 1.08706 0.85926 0.79718 0.79730 0.76999 1.19121 1.23597 1.19969 1.22173 0.86553 0.96846 0.96396 1.22317 0.95227 0.99840 0.93177 0.89205 1.21710 0.93260 1.01827 1.02507 1.21981 0.91175 0.90655 1.00831 0.92832 0.90832 0.92860 0.88686 0.88980 0.79027 0.72406 0.74672 0.91832 0.93148 0.90151 0.87666 0.96534 0.94828 0.92857 0.94616 0.96380 0.93000 0.89297 0.92468 0.80913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.89 71.98 0.71 0.25 16 2 C -0.08 -0.18 6.08 29.85 0.18 0.00 16 3 C -0.14 -1.19 5.14 -19.81 -0.10 -1.29 16 4 C 0.15 1.72 10.84 84.71 0.92 2.64 16 5 N -0.53 -10.51 10.37 -308.00 -3.19 -13.71 16 6 C 0.34 7.65 7.77 85.13 0.66 8.31 16 7 O -0.48 -12.12 11.66 -66.40 -0.77 -12.90 16 8 C -0.21 -4.05 5.90 -19.91 -0.12 -4.17 16 9 C 0.56 13.04 7.77 86.69 0.67 13.71 16 10 O -0.56 -18.35 15.19 16.81 0.26 -18.09 16 11 N -0.71 -12.08 5.51 -466.30 -2.57 -14.64 16 12 C 0.12 2.55 5.56 86.38 0.48 3.03 16 13 C -0.10 -1.77 4.74 30.59 0.14 -1.62 16 14 C -0.08 -2.15 2.38 -9.60 -0.02 -2.18 16 15 H 0.08 2.17 8.02 -2.38 -0.02 2.15 16 16 C 0.13 5.03 6.25 86.73 0.54 5.58 16 17 N -0.63 -30.77 3.21 -691.99 -2.22 -32.99 16 18 C -0.24 -14.00 10.57 84.03 0.89 -13.11 16 19 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 20 C -0.04 -2.36 5.43 84.86 0.46 -1.90 16 21 N -0.96 -61.71 13.97 21.65 0.30 -61.40 16 22 Si 0.95 48.17 24.27 68.60 1.66 49.84 16 23 H -0.27 -12.51 6.49 99.48 0.65 -11.86 16 24 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 25 H -0.27 -13.62 6.66 99.48 0.66 -12.96 16 26 C 0.10 4.36 4.16 86.86 0.36 4.73 16 27 C -0.09 -2.43 3.09 -9.40 -0.03 -2.45 16 28 H 0.09 2.36 8.05 -2.38 -0.02 2.34 16 29 C -0.14 -2.83 9.30 71.98 0.67 -2.16 16 30 C -0.02 -0.22 9.31 22.72 0.21 -0.01 16 31 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.09 0.00 8.09 -2.39 -0.02 -0.02 16 35 H 0.09 0.05 8.09 -2.39 -0.02 0.03 16 36 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 37 H 0.41 7.41 9.06 -74.06 -0.67 6.74 16 38 H 0.42 3.79 6.57 -92.71 -0.61 3.18 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.32 7.69 -2.39 -0.02 1.30 16 41 H 0.08 1.37 7.95 -2.39 -0.02 1.35 16 42 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.03 1.27 7.70 -2.39 -0.02 1.25 16 45 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 46 H 0.04 1.62 6.64 -2.39 -0.02 1.60 16 47 H 0.02 0.80 5.47 -2.39 -0.01 0.79 16 48 H 0.05 1.13 8.11 -2.39 -0.02 1.11 16 49 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.17 0.59 6.52 -2.91 -0.02 0.57 16 Total: -1.00 -85.75 406.13 -0.34 -86.09 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -0.44 Total: 8.46 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 6.63 Total: 9.34 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -7.68 Total: -122.74 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.52 Total: -30.99 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.66 Total: 49.84 kcal Total: -85.75 -0.34 -86.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103593653.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.369 kcal (2) G-P(sol) polarization free energy of solvation -85.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds