Wall clock time and date at job start Wed Apr 1 2020 04:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47355 * 2 1 4 4 C 1.38355 * 120.27112 * 90.00479 * 3 2 1 5 5 N 1.31886 * 121.18671 * 180.02562 * 4 3 2 6 6 C 1.32239 * 121.79807 * 359.97438 * 5 4 3 7 7 O 1.35424 * 119.79415 * 180.02562 * 6 5 4 8 8 C 1.40281 * 120.40070 * 0.02562 * 6 5 4 9 9 C 1.47520 * 120.59314 * 179.97438 * 8 6 5 10 10 O 1.21594 * 120.00535 * 325.23430 * 9 8 6 11 11 N 1.34785 * 120.00255 * 145.24006 * 9 8 6 12 12 C 1.48138 * 127.84305 * 175.22216 * 11 9 8 13 13 C 1.54386 * 104.62051 * 140.42040 * 12 11 9 14 14 H 1.08999 * 110.34639 * 142.73799 * 13 12 11 15 15 C 1.53006 * 110.42828 * 264.94973 * 13 12 11 16 16 C 1.54279 * 104.95962 * 23.86164 * 13 12 11 17 17 H 1.08992 * 110.34639 * 241.02649 * 16 13 12 18 18 C 1.53007 * 110.33927 * 118.87389 * 16 13 12 19 19 C 1.52995 * 109.47140 * 176.47669 * 18 16 13 20 20 N 1.46499 * 109.47343 * 180.02562 * 19 18 16 21 21 C 1.36937 * 120.00247 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99640 * 0.02562 * 21 20 19 23 23 C 1.38809 * 120.00037 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00227 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00095 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47173 * 60.00267 * 25 23 21 27 27 H 1.48502 * 109.47215 * 179.97438 * 25 23 21 28 28 H 1.48490 * 109.47239 * 300.00485 * 25 23 21 29 29 C 1.48311 * 127.76370 * 355.15625 * 11 9 8 30 30 C 1.38341 * 120.27125 * 270.25982 * 3 2 1 31 31 H 1.09004 * 109.46521 * 300.00129 * 1 2 3 32 32 H 1.08997 * 109.46877 * 59.99652 * 1 2 3 33 33 H 1.08992 * 109.47586 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46521 * 239.99871 * 2 1 3 35 35 H 1.08997 * 109.46877 * 120.00348 * 2 1 3 36 36 H 1.08002 * 119.40774 * 359.97182 * 4 3 2 37 37 H 0.96701 * 113.99752 * 269.96838 * 7 6 5 38 38 H 1.09003 * 110.40710 * 21.63058 * 12 11 9 39 39 H 1.09007 * 110.50736 * 259.25729 * 12 11 9 40 40 H 1.09000 * 109.46852 * 175.58450 * 15 13 12 41 41 H 1.08998 * 109.47380 * 295.58848 * 15 13 12 42 42 H 1.08997 * 109.46977 * 55.59164 * 15 13 12 43 43 H 1.08995 * 109.47028 * 56.47135 * 18 16 13 44 44 H 1.09004 * 109.46826 * 296.47322 * 18 16 13 45 45 H 1.08999 * 109.47474 * 300.00090 * 19 18 16 46 46 H 1.09004 * 109.47328 * 59.99753 * 19 18 16 47 47 H 0.96999 * 119.99773 * 0.02562 * 20 19 18 48 48 H 0.96995 * 120.00247 * 179.97438 * 24 23 21 49 49 H 1.08996 * 110.38431 * 100.78953 * 29 11 9 50 50 H 1.09004 * 110.51016 * 338.30138 * 29 11 9 51 51 H 1.07997 * 120.82666 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2650 2.0783 1.1949 5 7 2.7041 3.3217 1.2160 6 6 2.9423 3.9955 0.1033 7 8 3.3932 5.2706 0.1723 8 6 2.7307 3.3975 -1.1478 9 6 2.9944 4.1454 -2.3917 10 8 2.7800 5.3414 -2.4392 11 7 3.4730 3.5032 -3.4758 12 6 3.7063 4.0559 -4.8302 13 6 5.0313 3.4114 -5.2912 14 1 4.9916 3.1837 -6.3564 15 6 6.2097 4.3399 -4.9904 16 6 5.1493 2.1115 -4.4687 17 1 6.0466 2.1343 -3.8505 18 6 5.1747 0.8954 -5.3969 19 6 5.3801 -0.3743 -4.5684 20 7 5.4050 -1.5387 -5.4571 21 6 5.5789 -2.7935 -4.9370 22 1 5.6972 -2.9247 -3.8716 23 6 5.6020 -3.8967 -5.7791 24 7 5.4573 -3.7368 -7.0775 25 14 5.8385 -5.6084 -5.0696 26 1 4.7379 -5.9064 -4.1182 27 1 5.8251 -6.6063 -6.1693 28 1 7.1397 -5.6735 -4.3571 29 6 3.8864 2.0827 -3.5810 30 6 2.2598 2.0800 -1.1948 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.0829 1.5643 2.1272 37 1 2.6912 5.9355 0.1919 38 1 3.8062 5.1404 -4.7862 39 1 2.8941 3.7768 -5.5016 40 1 7.1424 3.8387 -5.2494 41 1 6.1124 5.2527 -5.5781 42 1 6.2139 4.5895 -3.9294 43 1 5.9920 0.9999 -6.1104 44 1 4.2290 0.8292 -5.9349 45 1 6.3256 -0.3081 -4.0303 46 1 4.5626 -0.4788 -3.8549 47 1 5.2991 -1.4207 -6.4141 48 1 5.4739 -4.5077 -7.6660 49 1 3.1019 1.4931 -4.0551 50 1 4.1233 1.6800 -2.5962 51 1 2.0821 1.5892 -2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104856822.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:22 Heat of formation + Delta-G solvation = -62.402086 kcal Electronic energy + Delta-G solvation = -31130.022297 eV Core-core repulsion = 27028.469559 eV Total energy + Delta-G solvation = -4101.552738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.12091 -40.80741 -39.15270 -38.34536 -36.78443 -35.25338 -34.66977 -33.93893 -32.82864 -31.73580 -30.13306 -28.47647 -27.82023 -26.21410 -25.34621 -25.05212 -24.06189 -22.95337 -22.02417 -20.91423 -20.62466 -19.78101 -19.11182 -18.48181 -18.08088 -17.24257 -17.04496 -16.69870 -16.56047 -16.00261 -15.68221 -15.36519 -15.18713 -15.12077 -14.88122 -14.74313 -14.45264 -14.38932 -14.35208 -14.16789 -13.78549 -13.45194 -13.16886 -13.13647 -13.01511 -12.89796 -12.85399 -12.74175 -12.42120 -12.33827 -12.23997 -12.15773 -11.87838 -11.84849 -11.62799 -11.55832 -11.35102 -11.25420 -10.95589 -10.86941 -10.52813 -9.94687 -9.76196 -8.95608 -7.91932 -5.20197 -0.49804 -0.02988 1.50324 1.52659 1.53856 1.58764 1.78474 2.38835 2.59032 2.65400 3.15544 3.42202 3.46738 3.53524 3.65390 3.68764 3.74534 3.79963 4.06820 4.10751 4.20195 4.23689 4.26343 4.43535 4.45503 4.49614 4.51214 4.53066 4.65241 4.67989 4.71231 4.78271 4.79590 4.83815 4.89911 4.92298 4.97037 5.06068 5.13094 5.16918 5.23651 5.30444 5.33828 5.38754 5.41791 5.46129 5.52006 5.53914 6.30741 6.33849 6.43695 6.73303 6.91524 7.37348 8.14820 8.36756 9.31480 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.003165 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.110726 B = 8844.471237 C =11317.216087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.139 4.139 4 C 0.149 3.851 5 N -0.522 5.522 6 C 0.342 3.658 7 O -0.486 6.486 8 C -0.208 4.208 9 C 0.587 3.413 10 O -0.566 6.566 11 N -0.613 5.613 12 C 0.107 3.893 13 C -0.096 4.096 14 H 0.104 0.896 15 C -0.139 4.139 16 C -0.084 4.084 17 H 0.079 0.921 18 C -0.101 4.101 19 C 0.150 3.850 20 N -0.748 5.748 21 C -0.244 4.244 22 H 0.076 0.924 23 C -0.075 4.075 24 N -0.970 5.970 25 Si 0.969 3.031 26 H -0.275 1.275 27 H -0.297 1.297 28 H -0.280 1.280 29 C 0.100 3.900 30 C -0.028 4.028 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.196 0.804 37 H 0.419 0.581 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.013 0.987 46 H 0.028 0.972 47 H 0.374 0.626 48 H 0.251 0.749 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 14.659 12.563 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.141 4.141 4 C -0.009 4.009 5 N -0.240 5.240 6 C 0.162 3.838 7 O -0.296 6.296 8 C -0.214 4.214 9 C 0.377 3.623 10 O -0.446 6.446 11 N -0.345 5.345 12 C -0.014 4.014 13 C -0.115 4.115 14 H 0.123 0.877 15 C -0.196 4.196 16 C -0.104 4.104 17 H 0.097 0.903 18 C -0.139 4.139 19 C 0.024 3.976 20 N -0.390 5.390 21 C -0.376 4.376 22 H 0.093 0.907 23 C -0.267 4.267 24 N -0.621 5.621 25 Si 0.799 3.201 26 H -0.201 1.201 27 H -0.224 1.224 28 H -0.206 1.206 29 C -0.022 4.022 30 C -0.054 4.054 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.213 0.787 37 H 0.280 0.720 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.031 0.969 46 H 0.046 0.954 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.110 0.890 50 H 0.100 0.900 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.586 15.482 13.528 22.281 hybrid contribution -0.204 -0.947 -0.996 1.390 sum -8.790 14.535 12.532 21.109 Atomic orbital electron populations 1.21767 0.93774 1.02794 1.02115 1.20576 0.96744 0.89554 1.04931 1.21136 1.00846 0.99259 0.92873 1.23235 0.90244 0.87930 0.99466 1.67364 1.14581 1.11073 1.31003 1.19219 0.90777 0.86988 0.86789 1.84601 1.36846 1.12641 1.95497 1.20935 1.09357 0.97547 0.93596 1.17620 0.76720 0.85883 0.82108 1.90736 1.54654 1.15280 1.83942 1.48922 1.62530 1.12739 1.10320 1.22569 0.97647 0.99507 0.81710 1.22164 0.94265 0.94038 1.01070 0.87750 1.21798 0.97607 0.99380 1.00817 1.22038 0.97832 0.94141 0.96371 0.90287 1.21652 1.02539 0.92131 0.97613 1.20863 0.97540 0.86240 0.93005 1.42599 1.87811 1.02360 1.06253 1.19594 1.40060 0.85281 0.92665 0.90654 1.25527 1.03754 1.01622 0.95781 1.69797 1.59019 1.30150 1.03092 0.85271 0.78258 0.79793 0.76828 1.20060 1.22363 1.20627 1.22871 0.97069 0.81128 1.01097 1.21972 0.92079 0.90886 1.00475 0.91890 0.93292 0.91089 0.90274 0.88395 0.78700 0.71976 0.90440 0.89278 0.91849 0.91449 0.94285 0.91657 0.91080 0.96941 0.95383 0.79429 0.94054 0.89032 0.90010 0.82614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.90 71.98 0.71 -0.89 16 2 C -0.08 -0.95 6.08 29.85 0.18 -0.77 16 3 C -0.14 -2.21 5.14 -19.81 -0.10 -2.31 16 4 C 0.15 2.47 10.84 84.71 0.92 3.39 16 5 N -0.52 -12.01 10.37 -307.99 -3.19 -15.21 16 6 C 0.34 8.60 7.74 85.13 0.66 9.26 16 7 O -0.49 -12.39 12.21 -70.30 -0.86 -13.25 16 8 C -0.21 -4.97 5.51 -19.91 -0.11 -5.08 16 9 C 0.59 15.76 7.46 86.69 0.65 16.41 16 10 O -0.57 -18.16 16.21 12.87 0.21 -17.95 16 11 N -0.61 -13.94 3.32 -811.27 -2.69 -16.63 16 12 C 0.11 2.13 6.62 86.53 0.57 2.70 16 13 C -0.10 -1.79 3.30 -9.89 -0.03 -1.82 16 14 H 0.10 1.73 7.71 -2.39 -0.02 1.71 16 15 C -0.14 -2.58 8.91 71.98 0.64 -1.94 16 16 C -0.08 -1.80 2.73 -9.88 -0.03 -1.83 16 17 H 0.08 1.81 7.71 -2.39 -0.02 1.79 16 18 C -0.10 -2.70 4.51 30.60 0.14 -2.56 16 19 C 0.15 5.33 6.12 86.38 0.53 5.86 16 20 N -0.75 -35.95 5.60 -343.46 -1.92 -37.87 16 21 C -0.24 -13.11 9.99 84.03 0.84 -12.27 16 22 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 23 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 24 N -0.97 -57.80 13.06 21.65 0.28 -57.52 16 25 Si 0.97 44.58 29.55 68.60 2.03 46.61 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 29 C 0.10 2.06 3.99 86.50 0.34 2.41 16 30 C -0.03 -0.54 7.70 22.72 0.17 -0.36 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 1.04 8.09 -2.38 -0.02 1.02 16 35 H 0.10 0.85 8.09 -2.39 -0.02 0.83 16 36 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.42 7.55 9.06 -74.06 -0.67 6.88 16 38 H 0.08 1.67 7.57 -2.39 -0.02 1.65 16 39 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.07 1.85 8.02 -2.38 -0.02 1.83 16 45 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.03 0.95 7.53 -2.39 -0.02 0.93 16 47 H 0.37 19.16 7.67 -92.71 -0.71 18.45 16 48 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 49 H 0.09 1.74 7.55 -2.39 -0.02 1.72 16 50 H 0.08 1.69 6.38 -2.38 -0.02 1.68 16 51 H 0.16 2.59 6.28 -2.91 -0.02 2.57 16 Total: -1.00 -72.35 412.79 -0.03 -72.39 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -0.44 Total: 32.92 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.55 Total: 6.52 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -7.53 Total: -127.23 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.65 Total: -31.20 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.35 -0.03 -72.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104856822.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.984 kcal (2) G-P(sol) polarization free energy of solvation -72.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds