Wall clock time and date at job start Wed Apr 1 2020 04:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47115 * 2 1 4 4 C 1.38678 * 120.42128 * 270.02408 * 3 2 1 5 5 C 1.38626 * 118.41845 * 179.70789 * 4 3 2 6 6 C 1.38230 * 119.16262 * 0.50799 * 5 4 3 7 7 C 1.50697 * 119.61447 * 179.75269 * 6 5 4 8 8 C 1.50700 * 109.46842 * 124.73319 * 7 6 5 9 9 O 1.21275 * 120.00018 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99980 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00121 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47205 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.55500 * 304.87375 * 12 11 10 14 14 C 1.53298 * 109.51390 * 184.74228 * 12 11 10 15 15 N 1.47151 * 108.38467 * 187.77317 * 14 12 11 16 16 C 1.36933 * 120.98034 * 230.55553 * 15 14 12 17 17 H 1.08004 * 119.99835 * 153.30360 * 16 15 14 18 18 C 1.38817 * 120.00467 * 333.30764 * 16 15 14 19 19 N 1.31619 * 119.99654 * 343.55139 * 18 16 15 20 20 Si 1.86796 * 120.00056 * 163.55185 * 18 16 15 21 21 H 1.48496 * 109.47112 * 94.83196 * 20 18 16 22 22 H 1.48498 * 109.47020 * 214.83071 * 20 18 16 23 23 H 1.48497 * 109.47184 * 334.83052 * 20 18 16 24 24 C 1.47151 * 118.03597 * 50.53995 * 15 14 12 25 25 C 1.53294 * 108.38487 * 309.46342 * 24 15 14 26 26 O 1.42962 * 109.51318 * 65.00231 * 12 11 10 27 27 N 1.31850 * 120.76384 * 359.48086 * 6 5 4 28 28 C 1.31889 * 121.72282 * 0.27365 * 27 6 5 29 29 H 1.09000 * 109.47073 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47227 * 300.00023 * 1 2 3 31 31 H 1.09008 * 109.47172 * 60.00015 * 1 2 3 32 32 H 1.09006 * 109.47174 * 240.00481 * 2 1 3 33 33 H 1.08997 * 109.47534 * 120.00241 * 2 1 3 34 34 H 1.07996 * 120.78758 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.41990 * 180.28278 * 5 4 3 36 36 H 1.08994 * 109.47535 * 4.72688 * 7 6 5 37 37 H 1.09005 * 109.47072 * 244.72449 * 7 6 5 38 38 H 0.96996 * 120.00140 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.47155 * 59.99330 * 11 10 8 40 40 H 1.09005 * 109.47132 * 299.99626 * 11 10 8 41 41 H 1.09010 * 109.47184 * 180.13002 * 13 12 11 42 42 H 1.08998 * 109.47124 * 300.12332 * 13 12 11 43 43 H 1.08998 * 109.47470 * 60.12940 * 13 12 11 44 44 H 1.09000 * 109.68350 * 307.50368 * 14 12 11 45 45 H 1.09003 * 109.67500 * 68.01332 * 14 12 11 46 46 H 0.97002 * 120.00107 * 179.97438 * 19 18 16 47 47 H 1.08998 * 109.68306 * 189.73649 * 24 15 14 48 48 H 1.09005 * 109.67737 * 69.18539 * 24 15 14 49 49 H 1.08993 * 109.51453 * 172.22607 * 25 24 15 50 50 H 1.08999 * 109.50743 * 292.33075 * 25 24 15 51 51 H 1.08002 * 119.61177 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2658 2.0830 -1.1959 5 6 2.7218 3.3913 -1.1474 6 6 2.9371 3.9844 0.0824 7 6 3.4380 5.4043 0.1469 8 6 2.4959 6.2318 0.9828 9 8 1.5141 5.7192 1.4769 10 7 2.7443 7.5415 1.1811 11 6 1.8281 8.3462 1.9931 12 6 2.3373 9.7873 2.0598 13 6 3.7766 9.7984 2.5786 14 6 1.4463 10.6021 3.0043 15 7 1.8385 12.0171 2.9070 16 6 2.1030 12.7541 4.0303 17 1 2.7742 13.5985 3.9765 18 6 1.5085 12.4160 5.2383 19 7 0.4634 11.6160 5.2563 20 14 2.1917 13.0962 6.8383 21 1 1.4429 14.3221 7.2147 22 1 2.0470 12.0790 7.9104 23 1 3.6282 13.4282 6.6616 24 6 1.9383 12.6165 1.5668 25 6 2.8054 11.7036 0.6923 26 8 2.2957 10.3694 0.7547 27 7 2.7042 3.3242 1.1997 28 6 2.2654 2.0804 1.1916 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.0925 1.5927 -2.1423 35 1 2.9099 3.9389 -2.0591 36 1 3.4890 5.8177 -0.8602 37 1 4.4309 5.4192 0.5965 38 1 3.5297 7.9514 0.7862 39 1 1.7764 7.9324 3.0002 40 1 0.8354 8.3317 1.5430 41 1 4.1373 10.8259 2.6277 42 1 3.8076 9.3546 3.5737 43 1 4.4105 9.2228 1.9041 44 1 0.4022 10.4896 2.7123 45 1 1.5807 10.2529 4.0281 46 1 0.0482 11.3794 6.1004 47 1 2.3990 13.6017 1.6387 48 1 0.9437 12.7068 1.1300 49 1 2.7793 12.0554 -0.3390 50 1 3.8326 11.7191 1.0565 51 1 2.0856 1.5719 2.1273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108228014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:05 Heat of formation + Delta-G solvation = -28.180764 kcal Electronic energy + Delta-G solvation = -30585.441122 eV Core-core repulsion = 26485.372332 eV Total energy + Delta-G solvation = -4100.068790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.64500 -39.54565 -38.60724 -35.27901 -34.78142 -34.28880 -32.55065 -31.90384 -31.30607 -31.18740 -28.19456 -27.91122 -26.35263 -25.38934 -24.01419 -23.52701 -23.21460 -21.53557 -21.08969 -20.18353 -18.68847 -17.33721 -17.06262 -16.71031 -16.46334 -15.81207 -15.64074 -15.28545 -15.07991 -14.75473 -14.40934 -14.27890 -14.10766 -13.99958 -13.77857 -13.52419 -13.44789 -13.19532 -13.00320 -12.81931 -12.68568 -12.48789 -12.31598 -12.08353 -11.70798 -11.60403 -11.56706 -11.29767 -11.18013 -11.00559 -10.81144 -10.65236 -10.30693 -10.25272 -9.98644 -9.90999 -9.72973 -9.52941 -9.40487 -9.04216 -8.90913 -8.72742 -8.53459 -6.72881 -5.84131 -3.27961 0.92056 1.17400 2.89505 3.30797 3.34839 3.41684 3.43077 3.74766 4.08260 4.27251 4.43953 4.44988 4.50329 4.64975 4.74790 4.93795 5.01896 5.06319 5.11421 5.18749 5.23884 5.29096 5.34937 5.43551 5.50418 5.53606 5.54004 5.61986 5.68638 5.69365 5.88037 5.92448 5.93067 5.95020 6.06680 6.09524 6.13693 6.15716 6.33662 6.48260 6.55121 6.61127 6.72969 6.79083 6.83397 7.08203 7.48174 7.71009 7.76044 7.89931 7.95353 8.33642 8.49264 9.11187 9.74302 10.31737 11.23829 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.002077 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.000195 B =13478.464827 C =14328.299318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.141 4.141 4 C -0.076 4.076 5 C -0.164 4.164 6 C 0.141 3.859 7 C -0.093 4.093 8 C 0.514 3.486 9 O -0.527 6.527 10 N -0.721 5.721 11 C 0.142 3.858 12 C 0.079 3.921 13 C -0.161 4.161 14 C 0.160 3.840 15 N -0.590 5.590 16 C -0.254 4.254 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.288 1.288 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.384 6.384 27 N -0.451 5.451 28 C 0.107 3.893 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.400 0.600 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.029 0.971 45 H 0.096 0.904 46 H 0.256 0.744 47 H 0.061 0.939 48 H 0.025 0.975 49 H 0.079 0.921 50 H 0.048 0.952 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.251 -18.812 -14.510 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.143 4.143 4 C -0.102 4.102 5 C -0.184 4.184 6 C 0.003 3.997 7 C -0.133 4.133 8 C 0.299 3.701 9 O -0.402 6.402 10 N -0.374 5.374 11 C 0.018 3.982 12 C 0.038 3.962 13 C -0.219 4.219 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.304 6.304 27 N -0.159 5.159 28 C -0.051 4.051 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.235 0.765 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.114 0.886 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.043 0.957 49 H 0.098 0.902 50 H 0.066 0.934 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.503 -18.875 -13.332 24.006 hybrid contribution 0.517 0.423 0.052 0.671 sum 7.021 -18.451 -13.279 23.793 Atomic orbital electron populations 1.21766 0.94496 1.01806 1.02530 1.20452 0.96312 0.91862 1.02995 1.20922 1.01107 0.97898 0.94378 1.21382 0.96536 0.94216 0.98066 1.21909 1.01775 0.96068 0.98650 1.20551 0.95591 0.94879 0.88694 1.20606 1.00242 0.90372 1.02126 1.20160 0.86512 0.82089 0.81335 1.90734 1.28785 1.71336 1.49367 1.45990 1.28788 1.09043 1.53544 1.21298 0.93195 0.88023 0.95678 1.22544 0.96632 0.91788 0.85285 1.22198 0.96017 1.02968 1.00695 1.21286 0.93786 0.83215 0.98398 1.43989 1.80819 1.06167 1.00430 1.19145 1.21016 1.11847 0.86363 0.91472 1.25057 0.95775 0.99951 0.98766 1.70013 1.20128 1.38956 1.25407 0.86281 0.78748 0.78235 0.83531 1.21416 1.21450 1.20409 1.21598 0.97155 0.95565 0.87428 1.23027 0.97257 0.83421 0.99494 1.87820 1.84833 1.28530 1.29184 1.67454 1.10075 1.07609 1.30741 1.22631 0.94941 0.90163 0.97388 0.92238 0.92270 0.92591 0.90999 0.90712 0.85053 0.84831 0.87464 0.87179 0.76490 0.90114 0.91052 0.90837 0.91868 0.93938 0.95296 0.88595 0.93426 0.92079 0.95695 0.90246 0.93404 0.83063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.15 0.37 -0.62 16 2 C -0.08 -0.51 6.09 -27.89 -0.17 -0.68 16 3 C -0.14 -1.32 5.15 -104.48 -0.54 -1.85 16 4 C -0.08 -0.67 9.86 -39.28 -0.39 -1.06 16 5 C -0.16 -1.60 9.71 -39.44 -0.38 -1.98 16 6 C 0.14 1.73 5.76 -82.59 -0.48 1.26 16 7 C -0.09 -0.99 6.10 -29.04 -0.18 -1.16 16 8 C 0.51 7.72 7.76 -10.99 -0.09 7.63 16 9 O -0.53 -10.26 15.33 5.56 0.09 -10.17 16 10 N -0.72 -10.38 5.19 -60.29 -0.31 -10.69 16 11 C 0.14 2.49 4.85 -4.04 -0.02 2.47 16 12 C 0.08 1.46 0.78 -90.47 -0.07 1.39 16 13 C -0.16 -2.74 7.86 37.16 0.29 -2.45 16 14 C 0.16 3.75 4.11 -3.53 -0.01 3.73 16 15 N -0.59 -14.39 2.56 -171.82 -0.44 -14.83 16 16 C -0.25 -6.77 9.65 -15.06 -0.15 -6.92 16 17 H 0.07 1.75 7.88 -52.48 -0.41 1.33 16 18 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 19 N -0.90 -25.83 11.14 55.49 0.62 -25.21 16 20 Si 0.90 21.35 29.58 -169.99 -5.03 16.32 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.11 2.23 6.73 -3.53 -0.02 2.21 16 25 C 0.05 0.79 6.60 37.31 0.25 1.03 16 26 O -0.38 -7.05 10.17 -35.23 -0.36 -7.40 16 27 N -0.45 -6.39 9.23 -9.47 -0.09 -6.48 16 28 C 0.11 1.23 10.86 -17.55 -0.19 1.04 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.13 0.93 7.95 -52.48 -0.42 0.51 16 36 H 0.11 0.80 7.87 -51.93 -0.41 0.39 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.40 4.85 7.00 -40.82 -0.29 4.56 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.07 1.37 6.11 -51.92 -0.32 1.05 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.04 0.59 6.59 -51.93 -0.34 0.25 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.10 2.49 6.16 -51.93 -0.32 2.17 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 50 H 0.05 0.79 6.26 -51.93 -0.32 0.47 16 51 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 407.08 15.07 6.13 6.13 Total: -1.00 -33.77 407.08 -9.54 -43.31 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -8.29 Total: 4.98 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.86 Total: 4.05 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.22 Total: -57.21 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.27 Total: -17.58 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.77 -9.54 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108228014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.133 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds