Wall clock time and date at job start Wed Apr 1 2020 04:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47115 * 2 1 4 4 C 1.38678 * 120.42128 * 270.02408 * 3 2 1 5 5 C 1.38626 * 118.41845 * 179.70789 * 4 3 2 6 6 C 1.38230 * 119.16262 * 0.50799 * 5 4 3 7 7 C 1.50697 * 119.61447 * 179.75269 * 6 5 4 8 8 C 1.50700 * 109.46842 * 124.73319 * 7 6 5 9 9 O 1.21275 * 120.00018 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99980 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00121 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47205 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.55500 * 304.87375 * 12 11 10 14 14 C 1.53298 * 109.51390 * 184.74228 * 12 11 10 15 15 N 1.47151 * 108.38467 * 187.77317 * 14 12 11 16 16 C 1.36933 * 120.98034 * 230.55553 * 15 14 12 17 17 H 1.08004 * 119.99835 * 153.30360 * 16 15 14 18 18 C 1.38817 * 120.00467 * 333.30764 * 16 15 14 19 19 N 1.31619 * 119.99654 * 343.55139 * 18 16 15 20 20 Si 1.86796 * 120.00056 * 163.55185 * 18 16 15 21 21 H 1.48496 * 109.47112 * 94.83196 * 20 18 16 22 22 H 1.48498 * 109.47020 * 214.83071 * 20 18 16 23 23 H 1.48497 * 109.47184 * 334.83052 * 20 18 16 24 24 C 1.47151 * 118.03597 * 50.53995 * 15 14 12 25 25 C 1.53294 * 108.38487 * 309.46342 * 24 15 14 26 26 O 1.42962 * 109.51318 * 65.00231 * 12 11 10 27 27 N 1.31850 * 120.76384 * 359.48086 * 6 5 4 28 28 C 1.31889 * 121.72282 * 0.27365 * 27 6 5 29 29 H 1.09000 * 109.47073 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47227 * 300.00023 * 1 2 3 31 31 H 1.09008 * 109.47172 * 60.00015 * 1 2 3 32 32 H 1.09006 * 109.47174 * 240.00481 * 2 1 3 33 33 H 1.08997 * 109.47534 * 120.00241 * 2 1 3 34 34 H 1.07996 * 120.78758 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.41990 * 180.28278 * 5 4 3 36 36 H 1.08994 * 109.47535 * 4.72688 * 7 6 5 37 37 H 1.09005 * 109.47072 * 244.72449 * 7 6 5 38 38 H 0.96996 * 120.00140 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.47155 * 59.99330 * 11 10 8 40 40 H 1.09005 * 109.47132 * 299.99626 * 11 10 8 41 41 H 1.09010 * 109.47184 * 180.13002 * 13 12 11 42 42 H 1.08998 * 109.47124 * 300.12332 * 13 12 11 43 43 H 1.08998 * 109.47470 * 60.12940 * 13 12 11 44 44 H 1.09000 * 109.68350 * 307.50368 * 14 12 11 45 45 H 1.09003 * 109.67500 * 68.01332 * 14 12 11 46 46 H 0.97002 * 120.00107 * 179.97438 * 19 18 16 47 47 H 1.08998 * 109.68306 * 189.73649 * 24 15 14 48 48 H 1.09005 * 109.67737 * 69.18539 * 24 15 14 49 49 H 1.08993 * 109.51453 * 172.22607 * 25 24 15 50 50 H 1.08999 * 109.50743 * 292.33075 * 25 24 15 51 51 H 1.08002 * 119.61177 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2658 2.0830 -1.1959 5 6 2.7218 3.3913 -1.1474 6 6 2.9371 3.9844 0.0824 7 6 3.4380 5.4043 0.1469 8 6 2.4959 6.2318 0.9828 9 8 1.5141 5.7192 1.4769 10 7 2.7443 7.5415 1.1811 11 6 1.8281 8.3462 1.9931 12 6 2.3373 9.7873 2.0598 13 6 3.7766 9.7984 2.5786 14 6 1.4463 10.6021 3.0043 15 7 1.8385 12.0171 2.9070 16 6 2.1030 12.7541 4.0303 17 1 2.7742 13.5985 3.9765 18 6 1.5085 12.4160 5.2383 19 7 0.4634 11.6160 5.2563 20 14 2.1917 13.0962 6.8383 21 1 1.4429 14.3221 7.2147 22 1 2.0470 12.0790 7.9104 23 1 3.6282 13.4282 6.6616 24 6 1.9383 12.6165 1.5668 25 6 2.8054 11.7036 0.6923 26 8 2.2957 10.3694 0.7547 27 7 2.7042 3.3242 1.1997 28 6 2.2654 2.0804 1.1916 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.0925 1.5927 -2.1423 35 1 2.9099 3.9389 -2.0591 36 1 3.4890 5.8177 -0.8602 37 1 4.4309 5.4192 0.5965 38 1 3.5297 7.9514 0.7862 39 1 1.7764 7.9324 3.0002 40 1 0.8354 8.3317 1.5430 41 1 4.1373 10.8259 2.6277 42 1 3.8076 9.3546 3.5737 43 1 4.4105 9.2228 1.9041 44 1 0.4022 10.4896 2.7123 45 1 1.5807 10.2529 4.0281 46 1 0.0482 11.3794 6.1004 47 1 2.3990 13.6017 1.6387 48 1 0.9437 12.7068 1.1300 49 1 2.7793 12.0554 -0.3390 50 1 3.8326 11.7191 1.0565 51 1 2.0856 1.5719 2.1273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108228014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:04 Heat of formation + Delta-G solvation = -50.531729 kcal Electronic energy + Delta-G solvation = -30586.410332 eV Core-core repulsion = 26485.372332 eV Total energy + Delta-G solvation = -4101.038000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.51269 -40.89415 -39.95167 -36.54946 -35.99562 -35.72399 -33.50967 -33.22026 -32.99818 -32.12533 -29.58491 -29.02890 -27.99994 -26.88980 -24.99079 -24.73863 -24.31024 -22.91041 -22.06498 -21.35408 -20.28767 -18.95431 -18.30756 -17.69848 -17.52126 -17.19394 -16.85963 -16.55277 -16.16751 -16.11496 -15.89027 -15.61146 -15.37803 -15.18056 -14.84620 -14.68511 -14.61078 -14.45496 -14.21274 -14.06586 -13.79237 -13.49408 -13.37305 -13.18343 -12.94184 -12.92273 -12.80419 -12.75130 -12.52674 -12.41841 -12.16887 -12.16423 -11.94142 -11.84763 -11.82799 -11.14686 -10.93898 -10.73794 -10.64262 -10.49472 -10.22197 -10.06035 -9.67582 -8.71412 -7.90037 -5.37321 0.16802 0.44966 1.44695 1.46814 1.56347 1.74420 2.18544 2.47926 2.80016 2.91880 3.25204 3.32570 3.51167 3.78528 3.87354 3.89259 4.00972 4.04258 4.06006 4.11679 4.15341 4.36432 4.43908 4.47583 4.48586 4.49733 4.54436 4.59923 4.64898 4.68472 4.72748 4.79295 4.81060 4.96159 4.98669 5.05569 5.05866 5.08282 5.13890 5.21709 5.22612 5.35952 5.36886 5.44533 5.44798 5.53642 5.61224 5.85076 6.29415 6.38399 6.63660 7.06452 7.17008 7.35280 7.76114 8.30279 9.15606 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.002077 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.000195 B =13478.464827 C =14328.299318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 C -0.138 4.138 4 C -0.081 4.081 5 C -0.162 4.162 6 C 0.110 3.890 7 C -0.082 4.082 8 C 0.511 3.489 9 O -0.578 6.578 10 N -0.708 5.708 11 C 0.153 3.847 12 C 0.096 3.904 13 C -0.153 4.153 14 C 0.167 3.833 15 N -0.606 5.606 16 C -0.258 4.258 17 H 0.075 0.925 18 C -0.052 4.052 19 N -0.938 5.938 20 Si 0.967 3.033 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.264 1.264 24 C 0.101 3.899 25 C 0.053 3.947 26 O -0.384 6.384 27 N -0.495 5.495 28 C 0.079 3.921 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.147 0.853 37 H 0.131 0.869 38 H 0.415 0.585 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.082 0.918 44 H -0.010 1.010 45 H 0.064 0.936 46 H 0.249 0.751 47 H 0.073 0.927 48 H 0.011 0.989 49 H 0.119 0.881 50 H 0.062 0.938 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.875 -19.451 -17.382 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.140 4.140 4 C -0.106 4.106 5 C -0.181 4.181 6 C -0.028 4.028 7 C -0.122 4.122 8 C 0.298 3.702 9 O -0.457 6.457 10 N -0.361 5.361 11 C 0.028 3.972 12 C 0.055 3.945 13 C -0.210 4.210 14 C 0.040 3.960 15 N -0.331 5.331 16 C -0.387 4.387 17 H 0.093 0.907 18 C -0.248 4.248 19 N -0.584 5.584 20 Si 0.795 3.205 21 H -0.214 1.214 22 H -0.222 1.222 23 H -0.189 1.189 24 C -0.025 4.025 25 C -0.025 4.025 26 O -0.303 6.303 27 N -0.204 5.204 28 C -0.079 4.079 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.181 0.819 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.149 0.851 38 H 0.253 0.747 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.008 0.992 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.091 0.909 48 H 0.029 0.971 49 H 0.137 0.863 50 H 0.080 0.920 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.181 -19.494 -16.252 26.989 hybrid contribution -0.372 0.641 0.879 1.149 sum 8.810 -18.853 -15.373 25.872 Atomic orbital electron populations 1.21757 0.94640 1.02581 1.01515 1.20508 0.96009 0.90399 1.04365 1.21209 0.99883 0.99017 0.93880 1.21829 0.95568 0.94155 0.99065 1.22274 1.00442 0.96562 0.98824 1.20924 0.96938 0.95659 0.89295 1.20689 0.99424 0.88852 1.03263 1.21029 0.86410 0.81949 0.80780 1.90718 1.31301 1.72236 1.51466 1.45803 1.28537 1.08883 1.52909 1.20900 0.93069 0.88049 0.95222 1.22143 0.96667 0.91204 0.84512 1.22106 0.94930 1.02883 1.01077 1.21047 0.92912 0.84101 0.97918 1.44243 1.80708 1.06541 1.01567 1.19517 1.20274 1.11699 0.87247 0.90748 1.25833 0.96207 1.00840 1.01885 1.70191 1.21760 1.40886 1.25548 0.85267 0.78677 0.77095 0.79478 1.21440 1.22197 1.18865 1.21839 0.97435 0.97129 0.86056 1.23113 0.96776 0.81698 1.00876 1.87830 1.85077 1.29234 1.28194 1.67368 1.11580 1.08904 1.32536 1.22852 0.96154 0.90135 0.98728 0.90573 0.94008 0.92882 0.88949 0.90022 0.81939 0.81695 0.83514 0.85105 0.74663 0.91906 0.93176 0.91906 0.92901 0.89973 0.99243 0.91736 0.94142 0.90895 0.97106 0.86329 0.91960 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 71.98 0.71 -1.09 16 2 C -0.07 -0.85 6.09 29.85 0.18 -0.67 16 3 C -0.14 -2.42 5.15 -19.77 -0.10 -2.52 16 4 C -0.08 -1.23 9.86 22.47 0.22 -1.00 16 5 C -0.16 -2.72 9.71 22.36 0.22 -2.51 16 6 C 0.11 2.56 5.76 42.55 0.25 2.80 16 7 C -0.08 -1.55 6.10 29.10 0.18 -1.37 16 8 C 0.51 14.99 7.76 87.66 0.68 15.67 16 9 O -0.58 -23.26 15.33 -3.01 -0.05 -23.30 16 10 N -0.71 -19.52 5.19 -463.06 -2.40 -21.93 16 11 C 0.15 5.51 4.85 86.38 0.42 5.93 16 12 C 0.10 3.57 0.78 -10.70 -0.01 3.56 16 13 C -0.15 -4.96 7.86 71.98 0.57 -4.39 16 14 C 0.17 8.20 4.11 86.36 0.35 8.55 16 15 N -0.61 -29.99 2.56 -697.53 -1.79 -31.78 16 16 C -0.26 -13.83 9.65 84.04 0.81 -13.02 16 17 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 18 C -0.05 -2.92 4.95 84.86 0.42 -2.50 16 19 N -0.94 -56.25 11.14 21.65 0.24 -56.01 16 20 Si 0.97 44.68 29.58 68.60 2.03 46.71 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 24 C 0.10 4.04 6.73 86.35 0.58 4.63 16 25 C 0.05 1.65 6.60 72.08 0.48 2.12 16 26 O -0.38 -13.37 10.17 -148.98 -1.52 -14.88 16 27 N -0.50 -14.27 9.23 -183.89 -1.70 -15.97 16 28 C 0.08 1.86 10.86 84.67 0.92 2.78 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.09 0.70 8.10 -2.38 -0.02 0.68 16 33 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 34 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.17 1.59 7.95 -2.91 -0.02 1.57 16 36 H 0.15 1.54 7.87 -2.39 -0.02 1.52 16 37 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.42 8.77 7.00 -92.71 -0.65 8.12 16 39 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.06 2.20 6.11 -2.38 -0.01 2.19 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.08 2.00 6.59 -2.39 -0.02 1.99 16 44 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 45 H 0.06 3.56 6.16 -2.39 -0.01 3.54 16 46 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16 47 H 0.07 2.72 7.96 -2.39 -0.02 2.70 16 48 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 49 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 50 H 0.06 1.82 6.26 -2.39 -0.01 1.81 16 51 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -78.71 407.08 1.97 -76.74 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.28 Total: 23.44 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.87 Total: 16.99 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -5.65 Total: -125.68 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.56 Total: -38.19 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -78.71 1.97 -76.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108228014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.204 kcal (2) G-P(sol) polarization free energy of solvation -78.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds