Wall clock time and date at job start Wed Apr 1 2020 04:41:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 C 1.50702 * 109.47115 * 2 1
4 4 C 1.38678 * 120.42128 * 270.02408 * 3 2 1
5 5 C 1.38626 * 118.41845 * 179.70789 * 4 3 2
6 6 C 1.38230 * 119.16262 * 0.50799 * 5 4 3
7 7 C 1.50697 * 119.61447 * 179.75269 * 6 5 4
8 8 C 1.50700 * 109.46842 * 124.73319 * 7 6 5
9 9 O 1.21275 * 120.00018 * 359.97438 * 8 7 6
10 10 N 1.34777 * 119.99980 * 179.97438 * 8 7 6
11 11 C 1.46502 * 120.00121 * 179.97438 * 10 8 7
12 12 C 1.52995 * 109.47205 * 179.97438 * 11 10 8
13 13 C 1.52996 * 109.55500 * 304.87375 * 12 11 10
14 14 C 1.53298 * 109.51390 * 184.74228 * 12 11 10
15 15 N 1.47151 * 108.38467 * 187.77317 * 14 12 11
16 16 C 1.36933 * 120.98034 * 230.55553 * 15 14 12
17 17 H 1.08004 * 119.99835 * 153.30360 * 16 15 14
18 18 C 1.38817 * 120.00467 * 333.30764 * 16 15 14
19 19 N 1.31619 * 119.99654 * 343.55139 * 18 16 15
20 20 Si 1.86796 * 120.00056 * 163.55185 * 18 16 15
21 21 H 1.48496 * 109.47112 * 94.83196 * 20 18 16
22 22 H 1.48498 * 109.47020 * 214.83071 * 20 18 16
23 23 H 1.48497 * 109.47184 * 334.83052 * 20 18 16
24 24 C 1.47151 * 118.03597 * 50.53995 * 15 14 12
25 25 C 1.53294 * 108.38487 * 309.46342 * 24 15 14
26 26 O 1.42962 * 109.51318 * 65.00231 * 12 11 10
27 27 N 1.31850 * 120.76384 * 359.48086 * 6 5 4
28 28 C 1.31889 * 121.72282 * 0.27365 * 27 6 5
29 29 H 1.09000 * 109.47073 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.47227 * 300.00023 * 1 2 3
31 31 H 1.09008 * 109.47172 * 60.00015 * 1 2 3
32 32 H 1.09006 * 109.47174 * 240.00481 * 2 1 3
33 33 H 1.08997 * 109.47534 * 120.00241 * 2 1 3
34 34 H 1.07996 * 120.78758 * 359.97438 * 4 3 2
35 35 H 1.08003 * 120.41990 * 180.28278 * 5 4 3
36 36 H 1.08994 * 109.47535 * 4.72688 * 7 6 5
37 37 H 1.09005 * 109.47072 * 244.72449 * 7 6 5
38 38 H 0.96996 * 120.00140 * 359.97438 * 10 8 7
39 39 H 1.09003 * 109.47155 * 59.99330 * 11 10 8
40 40 H 1.09005 * 109.47132 * 299.99626 * 11 10 8
41 41 H 1.09010 * 109.47184 * 180.13002 * 13 12 11
42 42 H 1.08998 * 109.47124 * 300.12332 * 13 12 11
43 43 H 1.08998 * 109.47470 * 60.12940 * 13 12 11
44 44 H 1.09000 * 109.68350 * 307.50368 * 14 12 11
45 45 H 1.09003 * 109.67500 * 68.01332 * 14 12 11
46 46 H 0.97002 * 120.00107 * 179.97438 * 19 18 16
47 47 H 1.08998 * 109.68306 * 189.73649 * 24 15 14
48 48 H 1.09005 * 109.67737 * 69.18539 * 24 15 14
49 49 H 1.08993 * 109.51453 * 172.22607 * 25 24 15
50 50 H 1.08999 * 109.50743 * 292.33075 * 25 24 15
51 51 H 1.08002 * 119.61177 * 180.02562 * 28 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0322 1.4208 0.0000
4 6 2.2658 2.0830 -1.1959
5 6 2.7218 3.3913 -1.1474
6 6 2.9371 3.9844 0.0824
7 6 3.4380 5.4043 0.1469
8 6 2.4959 6.2318 0.9828
9 8 1.5141 5.7192 1.4769
10 7 2.7443 7.5415 1.1811
11 6 1.8281 8.3462 1.9931
12 6 2.3373 9.7873 2.0598
13 6 3.7766 9.7984 2.5786
14 6 1.4463 10.6021 3.0043
15 7 1.8385 12.0171 2.9070
16 6 2.1030 12.7541 4.0303
17 1 2.7742 13.5985 3.9765
18 6 1.5085 12.4160 5.2383
19 7 0.4634 11.6160 5.2563
20 14 2.1917 13.0962 6.8383
21 1 1.4429 14.3221 7.2147
22 1 2.0470 12.0790 7.9104
23 1 3.6282 13.4282 6.6616
24 6 1.9383 12.6165 1.5668
25 6 2.8054 11.7036 0.6923
26 8 2.2957 10.3694 0.7547
27 7 2.7042 3.3242 1.1997
28 6 2.2654 2.0804 1.1916
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 -0.3634 0.5139 -0.8900
32 1 1.8933 -0.5138 -0.8901
33 1 1.8933 -0.5138 0.8899
34 1 2.0925 1.5927 -2.1423
35 1 2.9099 3.9389 -2.0591
36 1 3.4890 5.8177 -0.8602
37 1 4.4309 5.4192 0.5965
38 1 3.5297 7.9514 0.7862
39 1 1.7764 7.9324 3.0002
40 1 0.8354 8.3317 1.5430
41 1 4.1373 10.8259 2.6277
42 1 3.8076 9.3546 3.5737
43 1 4.4105 9.2228 1.9041
44 1 0.4022 10.4896 2.7123
45 1 1.5807 10.2529 4.0281
46 1 0.0482 11.3794 6.1004
47 1 2.3990 13.6017 1.6387
48 1 0.9437 12.7068 1.1300
49 1 2.7793 12.0554 -0.3390
50 1 3.8326 11.7191 1.0565
51 1 2.0856 1.5719 2.1273
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001108228014.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:04
Heat of formation + Delta-G solvation = -50.531729 kcal
Electronic energy + Delta-G solvation = -30586.410332 eV
Core-core repulsion = 26485.372332 eV
Total energy + Delta-G solvation = -4101.038000 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.51269 -40.89415 -39.95167 -36.54946 -35.99562 -35.72399 -33.50967 -33.22026
-32.99818 -32.12533 -29.58491 -29.02890 -27.99994 -26.88980 -24.99079 -24.73863
-24.31024 -22.91041 -22.06498 -21.35408 -20.28767 -18.95431 -18.30756 -17.69848
-17.52126 -17.19394 -16.85963 -16.55277 -16.16751 -16.11496 -15.89027 -15.61146
-15.37803 -15.18056 -14.84620 -14.68511 -14.61078 -14.45496 -14.21274 -14.06586
-13.79237 -13.49408 -13.37305 -13.18343 -12.94184 -12.92273 -12.80419 -12.75130
-12.52674 -12.41841 -12.16887 -12.16423 -11.94142 -11.84763 -11.82799 -11.14686
-10.93898 -10.73794 -10.64262 -10.49472 -10.22197 -10.06035 -9.67582 -8.71412
-7.90037 -5.37321 0.16802 0.44966 1.44695 1.46814 1.56347 1.74420
2.18544 2.47926 2.80016 2.91880 3.25204 3.32570 3.51167 3.78528
3.87354 3.89259 4.00972 4.04258 4.06006 4.11679 4.15341 4.36432
4.43908 4.47583 4.48586 4.49733 4.54436 4.59923 4.64898 4.68472
4.72748 4.79295 4.81060 4.96159 4.98669 5.05569 5.05866 5.08282
5.13890 5.21709 5.22612 5.35952 5.36886 5.44533 5.44798 5.53642
5.61224 5.85076 6.29415 6.38399 6.63660 7.06452 7.17008 7.35280
7.76114 8.30279 9.15606
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.018177 B = 0.002077 C = 0.001954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1540.000195 B =13478.464827 C =14328.299318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.075 4.075
3 C -0.138 4.138
4 C -0.081 4.081
5 C -0.162 4.162
6 C 0.110 3.890
7 C -0.082 4.082
8 C 0.511 3.489
9 O -0.578 6.578
10 N -0.708 5.708
11 C 0.153 3.847
12 C 0.096 3.904
13 C -0.153 4.153
14 C 0.167 3.833
15 N -0.606 5.606
16 C -0.258 4.258
17 H 0.075 0.925
18 C -0.052 4.052
19 N -0.938 5.938
20 Si 0.967 3.033
21 H -0.287 1.287
22 H -0.295 1.295
23 H -0.264 1.264
24 C 0.101 3.899
25 C 0.053 3.947
26 O -0.384 6.384
27 N -0.495 5.495
28 C 0.079 3.921
29 H 0.075 0.925
30 H 0.041 0.959
31 H 0.052 0.948
32 H 0.092 0.908
33 H 0.081 0.919
34 H 0.163 0.837
35 H 0.166 0.834
36 H 0.147 0.853
37 H 0.131 0.869
38 H 0.415 0.585
39 H 0.063 0.937
40 H 0.050 0.950
41 H 0.062 0.938
42 H 0.052 0.948
43 H 0.082 0.918
44 H -0.010 1.010
45 H 0.064 0.936
46 H 0.249 0.751
47 H 0.073 0.927
48 H 0.011 0.989
49 H 0.119 0.881
50 H 0.062 0.938
51 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.875 -19.451 -17.382 27.892
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.113 4.113
3 C -0.140 4.140
4 C -0.106 4.106
5 C -0.181 4.181
6 C -0.028 4.028
7 C -0.122 4.122
8 C 0.298 3.702
9 O -0.457 6.457
10 N -0.361 5.361
11 C 0.028 3.972
12 C 0.055 3.945
13 C -0.210 4.210
14 C 0.040 3.960
15 N -0.331 5.331
16 C -0.387 4.387
17 H 0.093 0.907
18 C -0.248 4.248
19 N -0.584 5.584
20 Si 0.795 3.205
21 H -0.214 1.214
22 H -0.222 1.222
23 H -0.189 1.189
24 C -0.025 4.025
25 C -0.025 4.025
26 O -0.303 6.303
27 N -0.204 5.204
28 C -0.079 4.079
29 H 0.094 0.906
30 H 0.060 0.940
31 H 0.071 0.929
32 H 0.111 0.889
33 H 0.100 0.900
34 H 0.181 0.819
35 H 0.183 0.817
36 H 0.165 0.835
37 H 0.149 0.851
38 H 0.253 0.747
39 H 0.081 0.919
40 H 0.068 0.932
41 H 0.081 0.919
42 H 0.071 0.929
43 H 0.100 0.900
44 H 0.008 0.992
45 H 0.083 0.917
46 H 0.059 0.941
47 H 0.091 0.909
48 H 0.029 0.971
49 H 0.137 0.863
50 H 0.080 0.920
51 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges 9.181 -19.494 -16.252 26.989
hybrid contribution -0.372 0.641 0.879 1.149
sum 8.810 -18.853 -15.373 25.872
Atomic orbital electron populations
1.21757 0.94640 1.02581 1.01515 1.20508 0.96009 0.90399 1.04365
1.21209 0.99883 0.99017 0.93880 1.21829 0.95568 0.94155 0.99065
1.22274 1.00442 0.96562 0.98824 1.20924 0.96938 0.95659 0.89295
1.20689 0.99424 0.88852 1.03263 1.21029 0.86410 0.81949 0.80780
1.90718 1.31301 1.72236 1.51466 1.45803 1.28537 1.08883 1.52909
1.20900 0.93069 0.88049 0.95222 1.22143 0.96667 0.91204 0.84512
1.22106 0.94930 1.02883 1.01077 1.21047 0.92912 0.84101 0.97918
1.44243 1.80708 1.06541 1.01567 1.19517 1.20274 1.11699 0.87247
0.90748 1.25833 0.96207 1.00840 1.01885 1.70191 1.21760 1.40886
1.25548 0.85267 0.78677 0.77095 0.79478 1.21440 1.22197 1.18865
1.21839 0.97435 0.97129 0.86056 1.23113 0.96776 0.81698 1.00876
1.87830 1.85077 1.29234 1.28194 1.67368 1.11580 1.08904 1.32536
1.22852 0.96154 0.90135 0.98728 0.90573 0.94008 0.92882 0.88949
0.90022 0.81939 0.81695 0.83514 0.85105 0.74663 0.91906 0.93176
0.91906 0.92901 0.89973 0.99243 0.91736 0.94142 0.90895 0.97106
0.86329 0.91960 0.82860
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.80 9.89 71.98 0.71 -1.09 16
2 C -0.07 -0.85 6.09 29.85 0.18 -0.67 16
3 C -0.14 -2.42 5.15 -19.77 -0.10 -2.52 16
4 C -0.08 -1.23 9.86 22.47 0.22 -1.00 16
5 C -0.16 -2.72 9.71 22.36 0.22 -2.51 16
6 C 0.11 2.56 5.76 42.55 0.25 2.80 16
7 C -0.08 -1.55 6.10 29.10 0.18 -1.37 16
8 C 0.51 14.99 7.76 87.66 0.68 15.67 16
9 O -0.58 -23.26 15.33 -3.01 -0.05 -23.30 16
10 N -0.71 -19.52 5.19 -463.06 -2.40 -21.93 16
11 C 0.15 5.51 4.85 86.38 0.42 5.93 16
12 C 0.10 3.57 0.78 -10.70 -0.01 3.56 16
13 C -0.15 -4.96 7.86 71.98 0.57 -4.39 16
14 C 0.17 8.20 4.11 86.36 0.35 8.55 16
15 N -0.61 -29.99 2.56 -697.53 -1.79 -31.78 16
16 C -0.26 -13.83 9.65 84.04 0.81 -13.02 16
17 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16
18 C -0.05 -2.92 4.95 84.86 0.42 -2.50 16
19 N -0.94 -56.25 11.14 21.65 0.24 -56.01 16
20 Si 0.97 44.68 29.58 68.60 2.03 46.71 16
21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16
22 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16
23 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16
24 C 0.10 4.04 6.73 86.35 0.58 4.63 16
25 C 0.05 1.65 6.60 72.08 0.48 2.12 16
26 O -0.38 -13.37 10.17 -148.98 -1.52 -14.88 16
27 N -0.50 -14.27 9.23 -183.89 -1.70 -15.97 16
28 C 0.08 1.86 10.86 84.67 0.92 2.78 16
29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16
30 H 0.04 0.64 8.14 -2.39 -0.02 0.63 16
31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16
32 H 0.09 0.70 8.10 -2.38 -0.02 0.68 16
33 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16
34 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16
35 H 0.17 1.59 7.95 -2.91 -0.02 1.57 16
36 H 0.15 1.54 7.87 -2.39 -0.02 1.52 16
37 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16
38 H 0.42 8.77 7.00 -92.71 -0.65 8.12 16
39 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16
40 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16
41 H 0.06 2.20 6.11 -2.38 -0.01 2.19 16
42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
43 H 0.08 2.00 6.59 -2.39 -0.02 1.99 16
44 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16
45 H 0.06 3.56 6.16 -2.39 -0.01 3.54 16
46 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16
47 H 0.07 2.72 7.96 -2.39 -0.02 2.70 16
48 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16
49 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16
50 H 0.06 1.82 6.26 -2.39 -0.01 1.81 16
51 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16
Total: -1.00 -78.71 407.08 1.97 -76.74
By element:
Atomic # 1 Polarization: 23.16 SS G_CDS: 0.28 Total: 23.44 kcal
Atomic # 6 Polarization: 10.11 SS G_CDS: 6.87 Total: 16.99 kcal
Atomic # 7 Polarization: -120.03 SS G_CDS: -5.65 Total: -125.68 kcal
Atomic # 8 Polarization: -36.62 SS G_CDS: -1.56 Total: -38.19 kcal
Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal
Total: -78.71 1.97 -76.74 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001108228014.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.204 kcal
(2) G-P(sol) polarization free energy of solvation -78.706 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.502 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.736 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.532 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds