Wall clock time and date at job start Wed Apr 1 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.47116 * 2 1 4 4 C 1.38018 * 119.51346 * 125.00062 * 3 2 1 5 5 C 1.39923 * 119.13561 * 179.97438 * 4 3 2 6 6 C 1.48159 * 120.89556 * 179.97438 * 5 4 3 7 7 O 1.21523 * 119.99329 * 50.15132 * 6 5 4 8 8 N 1.34771 * 120.00380 * 230.15021 * 6 5 4 9 9 C 1.46920 * 120.63086 * 356.18446 * 8 6 5 10 10 C 1.53203 * 108.77424 * 126.41488 * 9 8 6 11 11 C 1.53041 * 109.31010 * 54.63648 * 10 9 8 12 12 H 1.08997 * 109.45645 * 178.61866 * 11 10 9 13 13 C 1.52995 * 109.44872 * 58.65159 * 11 10 9 14 14 C 1.53039 * 109.53588 * 298.63184 * 11 10 9 15 15 H 1.08997 * 109.50425 * 301.41568 * 14 11 10 16 16 C 1.53006 * 109.49476 * 181.35085 * 14 11 10 17 17 N 1.46495 * 109.47160 * 175.06741 * 16 14 11 18 18 C 1.36932 * 120.00111 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00236 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00321 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99920 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00412 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46717 * 60.00051 * 22 20 18 24 24 H 1.48503 * 109.47247 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47112 * 299.99919 * 22 20 18 26 26 C 1.46931 * 120.62843 * 176.20872 * 8 6 5 27 27 C 1.39613 * 118.21376 * 0.25829 * 5 4 3 28 28 C 1.38859 * 118.94885 * 359.49772 * 27 5 4 29 29 O 1.35678 * 119.62094 * 180.25187 * 28 27 5 30 30 N 1.31875 * 119.51082 * 304.98093 * 3 2 1 31 31 H 1.09002 * 109.47019 * 59.99971 * 1 2 3 32 32 H 1.09002 * 109.46915 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46878 * 299.99704 * 1 2 3 34 34 H 1.09004 * 109.46673 * 240.00126 * 2 1 3 35 35 H 1.09000 * 109.47016 * 120.00572 * 2 1 3 36 36 H 1.08006 * 120.43173 * 0.02562 * 4 3 2 37 37 H 1.09002 * 109.58793 * 6.63117 * 9 8 6 38 38 H 1.08998 * 109.70683 * 246.26902 * 9 8 6 39 39 H 1.09002 * 109.49361 * 294.68555 * 10 9 8 40 40 H 1.08998 * 109.49524 * 174.58627 * 10 9 8 41 41 H 1.08997 * 109.47162 * 299.93190 * 13 11 10 42 42 H 1.08997 * 109.47536 * 59.93336 * 13 11 10 43 43 H 1.09002 * 109.46634 * 179.97438 * 13 11 10 44 44 H 1.09000 * 109.46909 * 295.06745 * 16 14 11 45 45 H 1.08998 * 109.47112 * 55.06917 * 16 14 11 46 46 H 0.97002 * 120.00241 * 359.97438 * 17 16 14 47 47 H 0.97004 * 120.00615 * 179.97438 * 21 20 18 48 48 H 1.09007 * 109.58676 * 113.79999 * 26 8 6 49 49 H 1.08995 * 109.59098 * 353.37306 * 26 8 6 50 50 H 1.08004 * 120.52621 * 179.72271 * 27 5 4 51 51 H 0.96706 * 114.00256 * 270.25692 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9086 1.8322 0.9839 5 6 3.3704 3.1530 0.9760 6 6 4.3112 3.6362 2.0136 7 8 5.3180 3.0030 2.2631 8 7 4.0504 4.7778 2.6807 9 6 2.8817 5.5975 2.3333 10 6 2.0550 5.8396 3.6003 11 6 2.9514 6.4489 4.6807 12 1 2.3601 6.6449 5.5751 13 6 3.5487 7.7605 4.1671 14 6 4.0802 5.4727 5.0197 15 1 3.6549 4.5293 5.3620 16 6 4.9562 6.0684 6.1237 17 7 5.9647 5.0866 6.5300 18 6 6.8672 5.3982 7.5115 19 1 6.8358 6.3680 7.9859 20 6 7.8232 4.4682 7.8962 21 7 7.8618 3.2865 7.3179 22 14 9.0548 4.8935 9.2347 23 1 8.3304 5.2048 10.4931 24 1 9.9612 3.7387 9.4586 25 1 9.8516 6.0750 8.8169 26 6 4.9298 5.2265 3.7689 27 6 2.9162 4.0051 -0.0324 28 6 2.0386 3.5086 -0.9871 29 8 1.5926 4.3233 -1.9762 30 7 1.6286 2.2526 -0.9403 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.2341 1.1434 1.7494 37 1 2.2742 5.0737 1.5953 38 1 3.2111 6.5525 1.9241 39 1 1.6488 4.8927 3.9560 40 1 1.2380 6.5254 3.3761 41 1 4.1406 7.5646 3.2730 42 1 2.7449 8.4559 3.9256 43 1 4.1869 8.1949 4.9366 44 1 5.4515 6.9648 5.7505 45 1 4.3347 6.3268 6.9810 46 1 5.9927 4.2154 6.1043 47 1 8.5300 2.6366 7.5864 48 1 5.4285 6.1511 3.4781 49 1 5.6738 4.4579 3.9781 50 1 3.2451 5.0331 -0.0715 51 1 0.7810 4.8011 -1.7563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132987148.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:10 Heat of formation + Delta-G solvation = -31.264902 kcal Electronic energy + Delta-G solvation = -31311.575320 eV Core-core repulsion = 27211.372792 eV Total energy + Delta-G solvation = -4100.202528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.30652 -40.08193 -38.22078 -37.54516 -35.15461 -34.29064 -33.51724 -32.50431 -31.85615 -30.01917 -29.64733 -27.79418 -26.22066 -25.32405 -24.55092 -23.72488 -23.13202 -22.35577 -21.23313 -20.05335 -18.96274 -18.20129 -17.43541 -17.00230 -16.77000 -16.50426 -16.13528 -15.63463 -15.05734 -15.01468 -14.95997 -14.61825 -14.53580 -14.25611 -13.75261 -13.62703 -13.47626 -13.23448 -13.05135 -12.80149 -12.74665 -12.51048 -12.27238 -12.12199 -11.95867 -11.77404 -11.71323 -11.38024 -11.28569 -11.13889 -10.94357 -10.81140 -10.69332 -10.39502 -10.34283 -10.23046 -10.06370 -9.96944 -9.63103 -9.51122 -9.14468 -8.84808 -8.57768 -6.89331 -5.71819 -3.01767 0.52768 0.60248 2.51111 2.79134 3.19218 3.32580 3.46191 3.50255 3.51917 4.05298 4.14684 4.54111 4.59968 4.60607 4.66526 4.75123 4.77809 4.85513 4.92635 4.98879 5.10444 5.13389 5.18570 5.25743 5.36345 5.40949 5.49837 5.57012 5.59220 5.61037 5.63951 5.68884 5.75246 5.79748 5.82738 5.89639 5.92919 5.97281 6.09284 6.09748 6.27008 6.29846 6.31268 6.50059 6.56522 6.74104 6.85839 7.07861 7.31717 7.53852 7.71989 8.05008 8.45844 9.56779 10.14305 10.48314 11.50393 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013624 B = 0.002639 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.650514 B =10609.387383 C =11786.645130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C 0.157 3.843 4 C -0.134 4.134 5 C -0.051 4.051 6 C 0.553 3.447 7 O -0.512 6.512 8 N -0.598 5.598 9 C 0.094 3.906 10 C -0.128 4.128 11 C -0.085 4.085 12 H 0.075 0.925 13 C -0.153 4.153 14 C -0.102 4.102 15 H 0.074 0.926 16 C 0.161 3.839 17 N -0.733 5.733 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.120 3.880 27 C -0.167 4.167 28 C 0.313 3.687 29 O -0.479 6.479 30 N -0.490 5.490 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.023 0.977 45 H 0.021 0.979 46 H 0.384 0.616 47 H 0.256 0.744 48 H 0.072 0.928 49 H 0.104 0.896 50 H 0.148 0.852 51 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.617 2.286 -16.969 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C 0.019 3.981 4 C -0.154 4.154 5 C -0.062 4.062 6 C 0.339 3.661 7 O -0.387 6.387 8 N -0.331 5.331 9 C -0.028 4.028 10 C -0.167 4.167 11 C -0.104 4.104 12 H 0.093 0.907 13 C -0.210 4.210 14 C -0.122 4.122 15 H 0.092 0.908 16 C 0.033 3.967 17 N -0.378 5.378 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.001 4.001 27 C -0.189 4.189 28 C 0.134 3.866 29 O -0.285 6.285 30 N -0.210 5.210 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.166 0.834 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.039 0.961 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.123 0.877 50 H 0.165 0.835 51 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -19.032 1.603 -17.657 26.011 hybrid contribution 0.874 0.572 1.404 1.750 sum -18.158 2.175 -16.253 24.466 Atomic orbital electron populations 1.21677 0.93842 1.01982 1.02617 1.20566 0.97224 0.89667 1.03840 1.20969 0.92495 0.95821 0.88768 1.22089 0.97458 0.95176 1.00701 1.20294 0.95878 0.94355 0.95657 1.18198 0.85554 0.80930 0.81395 1.90897 1.26561 1.56047 1.65188 1.48073 1.27484 1.22318 1.35252 1.22094 0.87209 0.95616 0.97926 1.21950 0.97852 1.01493 0.95375 1.21079 0.96151 0.95189 0.97997 0.90697 1.21991 1.00769 0.96494 1.01780 1.21696 0.95769 0.99250 0.95439 0.90767 1.20676 0.90260 0.92783 0.92993 1.42408 1.35100 1.15157 1.45124 1.19143 1.07580 0.98889 1.11804 0.91297 1.24755 0.99694 0.96235 1.00159 1.69659 1.37425 1.05922 1.44786 0.86285 0.81184 0.77009 0.81780 1.21331 1.21696 1.21287 1.21836 0.92444 1.01407 0.84444 1.22296 1.00629 1.01522 0.94439 1.18919 0.93564 0.87250 0.86828 1.84821 1.46718 1.58118 1.38889 1.66762 1.26191 1.03925 1.24142 0.91612 0.92091 0.92790 0.89527 0.89637 0.83384 0.89710 0.90692 0.91497 0.90773 0.92486 0.93086 0.91671 0.95897 0.96109 0.78146 0.93412 0.90975 0.87729 0.83455 0.74196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.77 37.16 0.36 -0.63 16 2 C -0.08 -0.58 6.33 -27.88 -0.18 -0.76 16 3 C 0.16 1.62 6.17 -82.65 -0.51 1.11 16 4 C -0.13 -1.52 9.44 -39.03 -0.37 -1.89 16 5 C -0.05 -0.62 5.05 -104.68 -0.53 -1.15 16 6 C 0.55 8.47 7.30 -12.19 -0.09 8.38 16 7 O -0.51 -10.25 16.49 5.35 0.09 -10.16 16 8 N -0.60 -8.07 2.97 -173.76 -0.52 -8.59 16 9 C 0.09 0.89 4.94 -3.71 -0.02 0.87 16 10 C -0.13 -1.19 5.63 -26.61 -0.15 -1.34 16 11 C -0.09 -0.98 2.71 -90.58 -0.25 -1.22 16 12 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 13 C -0.15 -1.61 8.11 37.16 0.30 -1.30 16 14 C -0.10 -1.59 2.15 -90.50 -0.19 -1.78 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 16 C 0.16 3.13 5.19 -4.04 -0.02 3.11 16 17 N -0.73 -18.61 5.38 -59.91 -0.32 -18.93 16 18 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 22 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.12 1.94 5.04 -3.71 -0.02 1.92 16 27 C -0.17 -1.68 7.41 -38.84 -0.29 -1.97 16 28 C 0.31 3.17 7.74 -17.16 -0.13 3.04 16 29 O -0.48 -3.94 13.56 -18.73 -0.25 -4.19 16 30 N -0.49 -5.40 9.87 -9.60 -0.09 -5.49 16 31 H 0.06 0.51 7.94 -51.93 -0.41 0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.55 7.86 -51.93 -0.41 0.14 16 36 H 0.15 1.61 7.94 -52.48 -0.42 1.20 16 37 H 0.08 0.68 4.51 -51.93 -0.23 0.45 16 38 H 0.07 0.61 6.70 -51.93 -0.35 0.26 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.60 4.98 -51.93 -0.26 0.34 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.77 6.57 -51.93 -0.34 0.42 16 44 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.38 10.46 6.90 -40.82 -0.28 10.18 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 48 H 0.07 1.12 6.69 -51.93 -0.35 0.78 16 49 H 0.10 2.15 6.23 -51.93 -0.32 1.82 16 50 H 0.15 1.23 7.06 -52.48 -0.37 0.86 16 51 H 0.40 1.16 9.06 45.56 0.41 1.57 16 LS Contribution 399.26 15.07 6.02 6.02 Total: -1.00 -35.53 399.26 -8.73 -44.26 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.03 Total: 8.53 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.32 Total: -1.06 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.21 Total: -61.07 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.17 Total: -14.35 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.53 -8.73 -44.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132987148.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.000 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds