Wall clock time and date at job start Wed Apr 1 2020 04:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.46922 * 2 1 4 4 C 1.38022 * 119.51219 * 125.28215 * 3 2 1 5 5 C 1.39936 * 119.13226 * 180.24826 * 4 3 2 6 6 C 1.48155 * 120.89068 * 179.75309 * 5 4 3 7 7 O 1.21512 * 120.00344 * 321.15296 * 6 5 4 8 8 N 1.34776 * 119.99816 * 141.15248 * 6 5 4 9 9 C 1.46920 * 120.63321 * 353.58513 * 8 6 5 10 10 C 1.53188 * 108.78065 * 233.63040 * 9 8 6 11 11 C 1.53044 * 109.31193 * 305.36787 * 10 9 8 12 12 H 1.08997 * 109.45940 * 181.38932 * 11 10 9 13 13 C 1.53000 * 109.45465 * 301.35391 * 11 10 9 14 14 C 1.53037 * 109.54142 * 61.35875 * 11 10 9 15 15 H 1.09003 * 109.49336 * 58.58795 * 14 11 10 16 16 C 1.52992 * 109.49666 * 178.68469 * 14 11 10 17 17 N 1.46503 * 109.46903 * 184.84188 * 16 14 11 18 18 C 1.36935 * 119.99874 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00518 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99953 * 179.97438 * 18 17 16 21 21 N 1.31623 * 119.99954 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00054 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47226 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46826 * 120.00195 * 22 20 18 25 25 H 1.48501 * 109.47281 * 239.99927 * 22 20 18 26 26 C 1.46927 * 120.62883 * 173.60724 * 8 6 5 27 27 C 1.39605 * 118.21265 * 359.48373 * 5 4 3 28 28 C 1.38850 * 118.95172 * 0.24902 * 27 5 4 29 29 O 1.35693 * 119.62243 * 180.02562 * 28 27 5 30 30 N 1.31878 * 119.51539 * 305.00364 * 3 2 1 31 31 H 1.09004 * 109.46884 * 299.99815 * 1 2 3 32 32 H 1.08999 * 109.47509 * 60.00050 * 1 2 3 33 33 H 1.09001 * 109.46879 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46884 * 240.00185 * 2 1 3 35 35 H 1.08993 * 109.47300 * 120.00327 * 2 1 3 36 36 H 1.07997 * 120.43540 * 0.02562 * 4 3 2 37 37 H 1.09004 * 109.58610 * 353.42336 * 9 8 6 38 38 H 1.09008 * 109.58964 * 113.69525 * 9 8 6 39 39 H 1.09002 * 109.49957 * 65.31320 * 10 9 8 40 40 H 1.08996 * 109.50236 * 185.41196 * 10 9 8 41 41 H 1.09001 * 109.47293 * 60.00256 * 13 11 10 42 42 H 1.09003 * 109.47030 * 179.97438 * 13 11 10 43 43 H 1.09004 * 109.47414 * 300.00069 * 13 11 10 44 44 H 1.09002 * 109.47153 * 304.84048 * 16 14 11 45 45 H 1.08994 * 109.47468 * 64.84006 * 16 14 11 46 46 H 0.96998 * 120.00147 * 359.97438 * 17 16 14 47 47 H 0.97000 * 119.99658 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.59217 * 246.15722 * 26 8 6 49 49 H 1.08995 * 109.59149 * 6.58851 * 26 8 6 50 50 H 1.08005 * 120.52177 * 180.22249 * 27 5 4 51 51 H 0.96698 * 113.99933 * 89.99493 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9130 1.8306 0.9805 5 6 3.3703 3.1531 0.9760 6 6 4.3118 3.6359 2.0130 7 8 4.1879 3.2686 3.1646 8 7 5.3058 4.4826 1.6790 9 6 5.5559 4.8258 0.2725 10 6 7.0279 4.5489 -0.0485 11 6 7.9134 5.2997 0.9487 12 1 8.9617 5.1242 0.7073 13 6 7.6156 6.7983 0.8669 14 6 7.6257 4.7997 2.3662 15 1 7.8138 3.7273 2.4187 16 6 8.5345 5.5275 3.3586 17 7 8.3414 4.9678 4.6987 18 6 9.0532 5.4651 5.7575 19 1 9.7573 6.2697 5.6047 20 6 8.8698 4.9352 7.0273 21 7 8.0114 3.9550 7.2137 22 14 9.8414 5.6131 8.4717 23 1 10.7323 6.7037 8.0007 24 1 8.9037 6.1465 9.4922 25 1 10.6599 4.5284 9.0705 26 6 6.1604 5.0794 2.7145 27 6 2.9198 4.0037 -0.0352 28 6 2.0381 3.5087 -0.9867 29 8 1.5920 4.3235 -1.9759 30 7 1.6281 2.2528 -0.9400 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.2421 1.1406 1.7433 37 1 4.9207 4.2168 -0.3708 38 1 5.3363 5.8810 0.1092 39 1 7.2217 3.4789 0.0268 40 1 7.2500 4.8889 -1.0600 41 1 6.5672 6.9741 1.1077 42 1 8.2458 7.3332 1.5774 43 1 7.8214 7.1551 -0.1423 44 1 9.5748 5.4014 3.0586 45 1 8.2855 6.5886 3.3687 46 1 7.7088 4.2455 4.8360 47 1 7.8836 3.5844 8.1010 48 1 5.9926 6.1558 2.7511 49 1 5.9242 4.6377 3.6825 50 1 3.2517 5.0307 -0.0765 51 1 2.1450 4.3182 -2.7692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132987150.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:16 Heat of formation + Delta-G solvation = -57.374490 kcal Electronic energy + Delta-G solvation = -31250.823020 eV Core-core repulsion = 27149.488295 eV Total energy + Delta-G solvation = -4101.334725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.25646 -41.07557 -39.38170 -38.26221 -36.74027 -35.44319 -34.58010 -33.54539 -33.27086 -31.52102 -30.49584 -28.81453 -27.62816 -26.47994 -25.43090 -24.99057 -24.45184 -23.14217 -22.59552 -21.08504 -19.95475 -19.24724 -18.97880 -18.32696 -17.63319 -17.41199 -17.05450 -16.77827 -16.43340 -16.22491 -15.99193 -15.73065 -15.52991 -15.31054 -14.98247 -14.95581 -14.60126 -14.46775 -14.23648 -14.16546 -13.81693 -13.43356 -13.08907 -13.06284 -12.90443 -12.89597 -12.76293 -12.64212 -12.46750 -12.37461 -12.15140 -12.03736 -11.95695 -11.91624 -11.76196 -11.55303 -11.32922 -11.24118 -10.97260 -10.91475 -10.46949 -9.90119 -9.70809 -9.01207 -7.95382 -5.25714 -0.41865 -0.17097 1.44605 1.46347 1.47087 1.56506 1.73450 2.44208 2.52736 2.54462 3.13276 3.37725 3.40497 3.64569 3.74094 3.80686 3.81616 3.84400 4.03236 4.07214 4.18896 4.20768 4.26773 4.36239 4.38015 4.44018 4.47003 4.55240 4.64488 4.66017 4.74350 4.78494 4.80357 4.87521 4.89613 4.97981 5.05548 5.08994 5.15513 5.17197 5.24871 5.28116 5.29471 5.37981 5.42786 5.45125 5.48435 5.60153 6.21721 6.25432 6.56748 6.80904 6.89817 7.30809 8.07519 8.29163 9.28237 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.002622 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.183133 B =10675.178846 C =12201.151968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 C 0.157 3.843 4 C -0.143 4.143 5 C -0.065 4.065 6 C 0.547 3.453 7 O -0.575 6.575 8 N -0.593 5.593 9 C 0.088 3.912 10 C -0.123 4.123 11 C -0.079 4.079 12 H 0.081 0.919 13 C -0.150 4.150 14 C -0.090 4.090 15 H 0.048 0.952 16 C 0.159 3.841 17 N -0.749 5.749 18 C -0.243 4.243 19 H 0.080 0.920 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.976 3.024 23 H -0.262 1.262 24 H -0.295 1.295 25 H -0.294 1.294 26 C 0.128 3.872 27 C -0.156 4.156 28 C 0.319 3.681 29 O -0.482 6.482 30 N -0.501 5.501 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.082 0.918 44 H 0.024 0.976 45 H 0.033 0.967 46 H 0.370 0.630 47 H 0.250 0.750 48 H 0.081 0.919 49 H 0.051 0.949 50 H 0.170 0.830 51 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.454 -0.912 -27.436 29.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C 0.020 3.980 4 C -0.164 4.164 5 C -0.076 4.076 6 C 0.336 3.664 7 O -0.454 6.454 8 N -0.324 5.324 9 C -0.032 4.032 10 C -0.160 4.160 11 C -0.098 4.098 12 H 0.099 0.901 13 C -0.207 4.207 14 C -0.110 4.110 15 H 0.067 0.933 16 C 0.033 3.967 17 N -0.391 5.391 18 C -0.375 4.375 19 H 0.098 0.902 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.186 1.186 24 H -0.222 1.222 25 H -0.221 1.221 26 C 0.006 3.994 27 C -0.178 4.178 28 C 0.139 3.861 29 O -0.293 6.293 30 N -0.221 5.221 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.161 0.839 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.042 0.958 45 H 0.051 0.949 46 H 0.202 0.798 47 H 0.058 0.942 48 H 0.100 0.900 49 H 0.069 0.931 50 H 0.188 0.812 51 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -11.369 -1.037 -27.069 29.378 hybrid contribution 1.212 0.071 2.044 2.377 sum -10.158 -0.967 -25.026 27.026 Atomic orbital electron populations 1.21656 0.93688 1.02848 1.01716 1.20670 0.97298 0.88335 1.04943 1.21282 0.91518 0.96795 0.88420 1.22189 0.98610 0.95510 1.00100 1.20074 0.97496 0.95376 0.94690 1.18747 0.81424 0.78580 0.87682 1.90855 1.73904 1.58302 1.22354 1.48111 1.30602 1.44303 1.09410 1.22542 0.98197 1.03139 0.79356 1.21957 0.93200 1.00328 1.00552 1.21072 1.00642 0.96549 0.91586 0.90100 1.21972 1.01780 0.94020 1.02921 1.21545 0.93429 0.99354 0.96628 0.93303 1.20872 0.96320 0.95881 0.83628 1.42703 1.49546 1.42853 1.04040 1.19698 1.16224 1.13583 0.87947 0.90225 1.25659 1.01364 0.99648 1.00584 1.69877 1.40392 1.30104 1.21908 0.85036 0.77721 0.77556 0.79221 1.18569 1.22217 1.22088 1.21492 0.89478 0.97934 0.90528 1.22483 0.98070 1.02445 0.94782 1.19015 0.89947 0.86392 0.90722 1.84784 1.55576 1.60710 1.28182 1.66861 1.24594 1.04295 1.26341 0.93896 0.92477 0.90219 0.88067 0.88681 0.83937 0.87661 0.88065 0.92556 0.86661 0.92428 0.93288 0.89889 0.95810 0.94937 0.79850 0.94164 0.90048 0.93065 0.81231 0.71311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.77 71.98 0.70 -1.29 16 2 C -0.07 -1.06 6.33 29.85 0.19 -0.87 16 3 C 0.16 3.09 6.17 42.50 0.26 3.35 16 4 C -0.14 -3.30 9.35 22.63 0.21 -3.09 16 5 C -0.07 -1.58 5.18 -19.90 -0.10 -1.69 16 6 C 0.55 17.51 7.38 86.88 0.64 18.16 16 7 O -0.57 -25.02 16.36 -3.75 -0.06 -25.08 16 8 N -0.59 -16.02 2.97 -821.98 -2.44 -18.46 16 9 C 0.09 1.39 4.42 86.36 0.38 1.77 16 10 C -0.12 -1.86 5.63 30.67 0.17 -1.69 16 11 C -0.08 -1.65 2.71 -10.77 -0.03 -1.68 16 12 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 13 C -0.15 -2.64 8.12 71.98 0.58 -2.05 16 14 C -0.09 -2.87 2.15 -10.72 -0.02 -2.89 16 15 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 16 C 0.16 6.32 5.19 86.38 0.45 6.77 16 17 N -0.75 -39.72 5.38 -343.46 -1.85 -41.56 16 18 C -0.24 -13.98 9.99 84.03 0.84 -13.14 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 20 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 21 N -0.97 -63.01 13.06 21.65 0.28 -62.73 16 22 Si 0.98 47.71 29.55 68.60 2.03 49.74 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 26 C 0.13 4.32 5.06 86.36 0.44 4.76 16 27 C -0.16 -2.79 7.42 22.75 0.17 -2.62 16 28 C 0.32 5.61 7.74 84.78 0.66 6.27 16 29 O -0.48 -6.23 13.56 -90.12 -1.22 -7.46 16 30 N -0.50 -10.08 9.87 -297.16 -2.93 -13.02 16 31 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.91 7.94 -2.39 -0.02 0.89 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.09 1.15 7.86 -2.39 -0.02 1.13 16 36 H 0.14 3.37 7.94 -2.91 -0.02 3.35 16 37 H 0.11 1.30 4.71 -2.38 -0.01 1.29 16 38 H 0.10 1.14 6.67 -2.38 -0.02 1.13 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.01 4.98 -2.39 -0.01 1.00 16 42 H 0.05 1.03 6.57 -2.39 -0.02 1.01 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.03 1.25 6.72 -2.39 -0.02 1.23 16 46 H 0.37 21.64 6.89 -92.71 -0.64 21.00 16 47 H 0.25 15.67 8.31 -92.71 -0.77 14.89 16 48 H 0.08 2.55 6.69 -2.39 -0.02 2.54 16 49 H 0.05 2.31 6.20 -2.39 -0.01 2.29 16 50 H 0.17 2.24 6.53 -2.91 -0.02 2.22 16 51 H 0.42 0.72 9.06 -74.06 -0.67 0.05 16 Total: -1.00 -82.67 398.36 -0.53 -83.20 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -0.34 Total: 29.66 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 6.01 Total: 5.71 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -6.94 Total: -135.77 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.28 Total: -32.54 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -82.67 -0.53 -83.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132987150.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.824 kcal (2) G-P(sol) polarization free energy of solvation -82.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds