Wall clock time and date at job start Wed Apr 1 2020 04:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47003 * 2 1 4 4 C 1.38023 * 119.51339 * 125.26088 * 3 2 1 5 5 C 1.39927 * 119.12938 * 180.24969 * 4 3 2 6 6 C 1.48160 * 120.89208 * 179.77317 * 5 4 3 7 7 O 1.21514 * 120.00028 * 49.72741 * 6 5 4 8 8 N 1.34774 * 120.00276 * 229.73455 * 6 5 4 9 9 C 1.46925 * 120.63173 * 356.16298 * 8 6 5 10 10 C 1.53196 * 108.77607 * 126.41626 * 9 8 6 11 11 C 1.53034 * 109.30993 * 54.63795 * 10 9 8 12 12 H 1.08993 * 109.46380 * 58.66039 * 11 10 9 13 13 C 1.53007 * 109.45985 * 178.61508 * 11 10 9 14 14 C 1.53042 * 109.53975 * 298.63265 * 11 10 9 15 15 H 1.08994 * 109.52782 * 301.39918 * 14 11 10 16 16 C 1.53006 * 109.49819 * 181.31667 * 14 11 10 17 17 N 1.46497 * 109.47233 * 175.16443 * 16 14 11 18 18 C 1.36935 * 120.00084 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99806 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99968 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00361 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00007 * 179.72485 * 20 18 17 23 23 H 1.48496 * 109.47215 * 60.00385 * 22 20 18 24 24 H 1.48507 * 109.47430 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47064 * 300.00370 * 22 20 18 26 26 C 1.46924 * 120.63435 * 176.19206 * 8 6 5 27 27 C 1.39611 * 118.21700 * 359.50018 * 5 4 3 28 28 C 1.38849 * 118.95138 * 0.24836 * 27 5 4 29 29 O 1.35682 * 119.62289 * 179.97438 * 28 27 5 30 30 N 1.31884 * 119.51149 * 304.99982 * 3 2 1 31 31 H 1.09001 * 109.47295 * 60.00032 * 1 2 3 32 32 H 1.09001 * 109.46877 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47023 * 299.99900 * 1 2 3 34 34 H 1.08992 * 109.47291 * 239.99806 * 2 1 3 35 35 H 1.09001 * 109.46862 * 119.99652 * 2 1 3 36 36 H 1.08002 * 120.43519 * 359.97438 * 4 3 2 37 37 H 1.08997 * 109.59110 * 246.20372 * 9 8 6 38 38 H 1.09006 * 109.58521 * 6.63073 * 9 8 6 39 39 H 1.08994 * 109.49958 * 174.59183 * 10 9 8 40 40 H 1.09006 * 109.49496 * 294.65429 * 10 9 8 41 41 H 1.08998 * 109.47166 * 180.02562 * 13 11 10 42 42 H 1.08996 * 109.46898 * 300.07431 * 13 11 10 43 43 H 1.09002 * 109.46817 * 60.06416 * 13 11 10 44 44 H 1.09006 * 109.46833 * 55.15977 * 16 14 11 45 45 H 1.08997 * 109.46958 * 295.16646 * 16 14 11 46 46 H 0.97000 * 119.99871 * 359.97438 * 17 16 14 47 47 H 0.96996 * 120.00151 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.59095 * 113.79424 * 26 8 6 49 49 H 1.09004 * 109.58962 * 353.36947 * 26 8 6 50 50 H 1.08003 * 120.52435 * 180.27129 * 27 5 4 51 51 H 0.96701 * 113.99662 * 90.00516 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9127 1.8308 0.9808 5 6 3.3699 3.1532 0.9762 6 6 4.3115 3.6362 2.0132 7 8 5.3171 3.0018 2.2635 8 7 4.0525 4.7790 2.6789 9 6 2.8853 5.6005 2.3302 10 6 2.0588 5.8455 3.5966 11 6 2.9559 6.4545 4.6765 12 1 3.3832 7.3878 4.3099 13 6 2.1260 6.7327 5.9315 14 6 4.0829 5.4767 5.0170 15 1 3.6563 4.5345 5.3607 16 6 4.9602 6.0726 6.1199 17 7 5.9683 5.0904 6.5262 18 6 6.8718 5.4021 7.5068 19 1 6.8408 6.3719 7.9811 20 6 7.8267 4.4713 7.8921 21 7 7.8641 3.2892 7.3145 22 14 9.0640 4.8993 9.2245 23 1 8.3449 5.2177 10.4841 24 1 9.9691 3.7436 9.4494 25 1 9.8622 6.0770 8.7989 26 6 4.9324 5.2276 3.7667 27 6 2.9195 4.0039 -0.0351 28 6 2.0378 3.5089 -0.9867 29 8 1.5911 4.3238 -1.9753 30 7 1.6282 2.2528 -0.9402 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.2409 1.1411 1.7443 37 1 3.2187 6.5543 1.9213 38 1 2.2772 5.0768 1.5926 39 1 1.2430 6.5324 3.3714 40 1 1.6502 4.8999 3.9530 41 1 2.7647 7.1669 6.7006 42 1 1.3232 7.4290 5.6892 43 1 1.6989 5.7995 6.2988 44 1 4.3393 6.3321 6.9775 45 1 5.4557 6.9685 5.7458 46 1 5.9954 4.2190 6.1010 47 1 8.5312 2.6386 7.5840 48 1 5.4327 6.1510 3.4749 49 1 5.6750 4.4579 3.9770 50 1 3.2520 5.0306 -0.0768 51 1 2.1438 4.3191 -2.7687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132987151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:21 Heat of formation + Delta-G solvation = -34.555953 kcal Electronic energy + Delta-G solvation = -31154.877284 eV Core-core repulsion = 27054.532045 eV Total energy + Delta-G solvation = -4100.345239 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27442 -39.95631 -38.09983 -37.52944 -35.18236 -34.26776 -33.67830 -32.54600 -31.83153 -29.99509 -29.64453 -28.33304 -26.00696 -25.23598 -24.04432 -23.38857 -23.11872 -22.11202 -21.25480 -20.13745 -19.47293 -18.56030 -17.47490 -17.05476 -16.81986 -16.35812 -15.97035 -15.71823 -15.14227 -14.86781 -14.77887 -14.44225 -14.36610 -14.03468 -13.92017 -13.60566 -13.48988 -13.19023 -13.06117 -12.72715 -12.64491 -12.53161 -12.31607 -12.13973 -11.92168 -11.78831 -11.73248 -11.55603 -11.34374 -11.01278 -10.91319 -10.81516 -10.64333 -10.40363 -10.32071 -10.19887 -10.05339 -9.95073 -9.62353 -9.52459 -9.12328 -8.84710 -8.61049 -6.88232 -5.71307 -3.01095 0.52273 0.59944 2.54649 2.84937 3.01807 3.42851 3.46469 3.50565 3.52124 4.06274 4.15766 4.55808 4.59945 4.60948 4.68862 4.76612 4.80417 4.86270 4.92337 4.99333 5.09749 5.14684 5.22768 5.33071 5.37630 5.42744 5.57826 5.59761 5.60820 5.65304 5.68684 5.70493 5.77111 5.80164 5.89249 5.91549 5.94998 6.00552 6.09857 6.13156 6.20280 6.30099 6.42221 6.51396 6.55401 6.79009 6.87113 7.07805 7.32409 7.53693 7.72574 8.05140 8.46466 9.57366 10.15055 10.49131 11.50952 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.002602 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.957647 B =10759.986398 C =11747.112954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C 0.157 3.843 4 C -0.133 4.133 5 C -0.051 4.051 6 C 0.553 3.447 7 O -0.513 6.513 8 N -0.599 5.599 9 C 0.095 3.905 10 C -0.128 4.128 11 C -0.085 4.085 12 H 0.072 0.928 13 C -0.148 4.148 14 C -0.102 4.102 15 H 0.074 0.926 16 C 0.159 3.841 17 N -0.733 5.733 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.120 3.880 27 C -0.168 4.168 28 C 0.313 3.687 29 O -0.480 6.480 30 N -0.490 5.490 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.148 0.852 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.028 0.972 45 H 0.019 0.981 46 H 0.384 0.616 47 H 0.256 0.744 48 H 0.070 0.930 49 H 0.106 0.894 50 H 0.148 0.852 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.390 1.090 -18.470 25.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C 0.019 3.981 4 C -0.154 4.154 5 C -0.062 4.062 6 C 0.339 3.661 7 O -0.388 6.388 8 N -0.332 5.332 9 C -0.028 4.028 10 C -0.167 4.167 11 C -0.104 4.104 12 H 0.090 0.910 13 C -0.205 4.205 14 C -0.121 4.121 15 H 0.093 0.907 16 C 0.031 3.969 17 N -0.378 5.378 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.001 4.001 27 C -0.189 4.189 28 C 0.134 3.866 29 O -0.287 6.287 30 N -0.210 5.210 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.166 0.834 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.036 0.964 46 H 0.218 0.782 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.124 0.876 50 H 0.166 0.834 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -17.739 0.738 -18.466 25.617 hybrid contribution 1.609 0.331 0.836 1.843 sum -16.131 1.069 -17.630 23.920 Atomic orbital electron populations 1.21684 0.93822 1.01950 1.02750 1.20560 0.97245 0.89641 1.03789 1.20981 0.92340 0.95737 0.89046 1.22094 0.97836 0.95159 1.00266 1.20295 0.96079 0.94330 0.95525 1.18190 0.85519 0.80940 0.81427 1.90892 1.26663 1.56020 1.65240 1.48104 1.27574 1.22216 1.35273 1.22094 0.87170 0.95544 0.98010 1.21984 0.97950 1.01700 0.95022 1.21099 0.95380 0.98549 0.95338 0.90985 1.21880 0.99492 1.01428 0.97698 1.21725 0.95597 0.99420 0.95379 0.90718 1.20722 0.90184 0.92641 0.93361 1.42406 1.35098 1.15086 1.45179 1.19144 1.07556 0.98834 1.11807 0.91300 1.24751 0.99694 0.96228 1.00198 1.69659 1.37532 1.05867 1.44765 0.86287 0.81235 0.77002 0.81742 1.21329 1.21706 1.21306 1.21824 0.92431 1.01398 0.84469 1.22265 0.98412 1.01619 0.96624 1.18896 0.91063 0.86483 0.90144 1.84794 1.54962 1.61395 1.27509 1.66767 1.24820 1.03574 1.25810 0.91567 0.92082 0.92767 0.89548 0.89646 0.83384 0.90921 0.89423 0.90722 0.91469 0.91560 0.93182 0.92772 0.95443 0.96351 0.78159 0.93429 0.91223 0.87615 0.83443 0.74071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.77 37.16 0.36 -0.70 16 2 C -0.07 -0.57 6.33 -27.88 -0.18 -0.75 16 3 C 0.16 1.61 6.18 -82.65 -0.51 1.10 16 4 C -0.13 -1.51 9.44 -39.03 -0.37 -1.88 16 5 C -0.05 -0.63 5.04 -104.68 -0.53 -1.15 16 6 C 0.55 8.49 7.30 -12.19 -0.09 8.40 16 7 O -0.51 -10.19 16.48 5.35 0.09 -10.10 16 8 N -0.60 -8.28 2.97 -173.76 -0.52 -8.79 16 9 C 0.09 0.96 5.41 -3.71 -0.02 0.94 16 10 C -0.13 -1.30 5.36 -26.61 -0.14 -1.44 16 11 C -0.08 -1.01 2.23 -90.58 -0.20 -1.22 16 12 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 13 C -0.15 -1.71 8.82 37.16 0.33 -1.38 16 14 C -0.10 -1.61 1.92 -90.50 -0.17 -1.79 16 15 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.16 3.12 5.41 -4.04 -0.02 3.09 16 17 N -0.73 -18.66 5.38 -59.91 -0.32 -18.98 16 18 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 22 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.12 1.97 5.51 -3.71 -0.02 1.95 16 27 C -0.17 -1.68 7.41 -38.84 -0.29 -1.97 16 28 C 0.31 3.16 7.74 -17.17 -0.13 3.03 16 29 O -0.48 -3.92 13.56 -18.75 -0.25 -4.18 16 30 N -0.49 -5.39 9.87 -9.60 -0.09 -5.48 16 31 H 0.07 0.55 7.94 -51.93 -0.41 0.14 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.55 7.86 -51.93 -0.41 0.14 16 36 H 0.15 1.61 7.94 -52.49 -0.42 1.20 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.82 4.52 -51.93 -0.23 0.58 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.84 6.30 -51.93 -0.33 0.51 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.03 0.54 6.15 -51.93 -0.32 0.22 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 10.48 6.89 -40.82 -0.28 10.20 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.11 2.18 6.23 -51.93 -0.32 1.85 16 50 H 0.15 1.23 7.07 -52.48 -0.37 0.86 16 51 H 0.40 1.34 9.06 45.56 0.41 1.75 16 LS Contribution 405.34 15.07 6.11 6.11 Total: -1.00 -35.16 405.34 -8.82 -43.98 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.30 Total: 9.03 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.23 Total: -1.21 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.21 Total: -61.33 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.17 Total: -14.28 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.16 -8.82 -43.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132987151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.425 kcal (2) G-P(sol) polarization free energy of solvation -35.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds