Wall clock time and date at job start Wed Apr 1 2020 04:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47003 * 2 1 4 4 C 1.38023 * 119.51339 * 125.26088 * 3 2 1 5 5 C 1.39927 * 119.12938 * 180.24969 * 4 3 2 6 6 C 1.48160 * 120.89208 * 179.77317 * 5 4 3 7 7 O 1.21514 * 120.00028 * 49.72741 * 6 5 4 8 8 N 1.34774 * 120.00276 * 229.73455 * 6 5 4 9 9 C 1.46925 * 120.63173 * 356.16298 * 8 6 5 10 10 C 1.53196 * 108.77607 * 126.41626 * 9 8 6 11 11 C 1.53034 * 109.30993 * 54.63795 * 10 9 8 12 12 H 1.08993 * 109.46380 * 58.66039 * 11 10 9 13 13 C 1.53007 * 109.45985 * 178.61508 * 11 10 9 14 14 C 1.53042 * 109.53975 * 298.63265 * 11 10 9 15 15 H 1.08994 * 109.52782 * 301.39918 * 14 11 10 16 16 C 1.53006 * 109.49819 * 181.31667 * 14 11 10 17 17 N 1.46497 * 109.47233 * 175.16443 * 16 14 11 18 18 C 1.36935 * 120.00084 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99806 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99968 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00361 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00007 * 179.72485 * 20 18 17 23 23 H 1.48496 * 109.47215 * 60.00385 * 22 20 18 24 24 H 1.48507 * 109.47430 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47064 * 300.00370 * 22 20 18 26 26 C 1.46924 * 120.63435 * 176.19206 * 8 6 5 27 27 C 1.39611 * 118.21700 * 359.50018 * 5 4 3 28 28 C 1.38849 * 118.95138 * 0.24836 * 27 5 4 29 29 O 1.35682 * 119.62289 * 179.97438 * 28 27 5 30 30 N 1.31884 * 119.51149 * 304.99982 * 3 2 1 31 31 H 1.09001 * 109.47295 * 60.00032 * 1 2 3 32 32 H 1.09001 * 109.46877 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47023 * 299.99900 * 1 2 3 34 34 H 1.08992 * 109.47291 * 239.99806 * 2 1 3 35 35 H 1.09001 * 109.46862 * 119.99652 * 2 1 3 36 36 H 1.08002 * 120.43519 * 359.97438 * 4 3 2 37 37 H 1.08997 * 109.59110 * 246.20372 * 9 8 6 38 38 H 1.09006 * 109.58521 * 6.63073 * 9 8 6 39 39 H 1.08994 * 109.49958 * 174.59183 * 10 9 8 40 40 H 1.09006 * 109.49496 * 294.65429 * 10 9 8 41 41 H 1.08998 * 109.47166 * 180.02562 * 13 11 10 42 42 H 1.08996 * 109.46898 * 300.07431 * 13 11 10 43 43 H 1.09002 * 109.46817 * 60.06416 * 13 11 10 44 44 H 1.09006 * 109.46833 * 55.15977 * 16 14 11 45 45 H 1.08997 * 109.46958 * 295.16646 * 16 14 11 46 46 H 0.97000 * 119.99871 * 359.97438 * 17 16 14 47 47 H 0.96996 * 120.00151 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.59095 * 113.79424 * 26 8 6 49 49 H 1.09004 * 109.58962 * 353.36947 * 26 8 6 50 50 H 1.08003 * 120.52435 * 180.27129 * 27 5 4 51 51 H 0.96701 * 113.99662 * 90.00516 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9127 1.8308 0.9808 5 6 3.3699 3.1532 0.9762 6 6 4.3115 3.6362 2.0132 7 8 5.3171 3.0018 2.2635 8 7 4.0525 4.7790 2.6789 9 6 2.8853 5.6005 2.3302 10 6 2.0588 5.8455 3.5966 11 6 2.9559 6.4545 4.6765 12 1 3.3832 7.3878 4.3099 13 6 2.1260 6.7327 5.9315 14 6 4.0829 5.4767 5.0170 15 1 3.6563 4.5345 5.3607 16 6 4.9602 6.0726 6.1199 17 7 5.9683 5.0904 6.5262 18 6 6.8718 5.4021 7.5068 19 1 6.8408 6.3719 7.9811 20 6 7.8267 4.4713 7.8921 21 7 7.8641 3.2892 7.3145 22 14 9.0640 4.8993 9.2245 23 1 8.3449 5.2177 10.4841 24 1 9.9691 3.7436 9.4494 25 1 9.8622 6.0770 8.7989 26 6 4.9324 5.2276 3.7667 27 6 2.9195 4.0039 -0.0351 28 6 2.0378 3.5089 -0.9867 29 8 1.5911 4.3238 -1.9753 30 7 1.6282 2.2528 -0.9402 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.2409 1.1411 1.7443 37 1 3.2187 6.5543 1.9213 38 1 2.2772 5.0768 1.5926 39 1 1.2430 6.5324 3.3714 40 1 1.6502 4.8999 3.9530 41 1 2.7647 7.1669 6.7006 42 1 1.3232 7.4290 5.6892 43 1 1.6989 5.7995 6.2988 44 1 4.3393 6.3321 6.9775 45 1 5.4557 6.9685 5.7458 46 1 5.9954 4.2190 6.1010 47 1 8.5312 2.6386 7.5840 48 1 5.4327 6.1510 3.4749 49 1 5.6750 4.4579 3.9770 50 1 3.2520 5.0306 -0.0768 51 1 2.1438 4.3191 -2.7687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132987151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:20 Heat of formation + Delta-G solvation = -61.066785 kcal Electronic energy + Delta-G solvation = -31156.026880 eV Core-core repulsion = 27054.532045 eV Total energy + Delta-G solvation = -4101.494835 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.20793 -40.99366 -39.28639 -38.26565 -36.72185 -35.45229 -34.74467 -33.59154 -33.27905 -31.50291 -30.51486 -29.41277 -27.54431 -26.21324 -25.20854 -24.68004 -24.20859 -22.94839 -22.62386 -21.27263 -20.46678 -19.45925 -19.10908 -18.36185 -17.77876 -17.31187 -17.03705 -16.75402 -16.54670 -16.13559 -15.66350 -15.62318 -15.49688 -15.20807 -15.11165 -14.95839 -14.50062 -14.34164 -14.28989 -14.07097 -13.99650 -13.43620 -13.16717 -13.05769 -12.96894 -12.80126 -12.76313 -12.68746 -12.64701 -12.36553 -12.23309 -12.07831 -11.94598 -11.92637 -11.82776 -11.55922 -11.30783 -11.22046 -10.93343 -10.90784 -10.48322 -9.89906 -9.79628 -8.99924 -7.94493 -5.24688 -0.37225 -0.18041 1.39022 1.44962 1.48990 1.55170 1.75450 2.28249 2.55290 2.63405 3.10490 3.38309 3.41668 3.62823 3.73025 3.79293 3.80599 3.81793 3.98134 4.06767 4.18759 4.21203 4.24996 4.36454 4.38391 4.42445 4.49530 4.56467 4.64546 4.69999 4.75947 4.77993 4.79249 4.87724 4.89894 4.94469 5.04460 5.06560 5.10454 5.17398 5.21604 5.23968 5.28146 5.36543 5.45210 5.46817 5.48026 5.55578 6.19118 6.26109 6.54077 6.79169 6.87418 7.31661 8.08350 8.30142 9.28786 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.002602 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.957647 B =10759.986398 C =11747.112954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C 0.159 3.841 4 C -0.146 4.146 5 C -0.061 4.061 6 C 0.549 3.451 7 O -0.573 6.573 8 N -0.593 5.593 9 C 0.090 3.910 10 C -0.123 4.123 11 C -0.078 4.078 12 H 0.088 0.912 13 C -0.145 4.145 14 C -0.088 4.088 15 H 0.050 0.950 16 C 0.157 3.843 17 N -0.748 5.748 18 C -0.245 4.245 19 H 0.079 0.921 20 C -0.079 4.079 21 N -0.972 5.972 22 Si 0.976 3.024 23 H -0.275 1.275 24 H -0.298 1.298 25 H -0.276 1.276 26 C 0.127 3.873 27 C -0.158 4.158 28 C 0.320 3.680 29 O -0.481 6.481 30 N -0.501 5.501 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.142 0.858 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.034 0.966 45 H 0.026 0.974 46 H 0.370 0.630 47 H 0.250 0.750 48 H 0.079 0.921 49 H 0.054 0.946 50 H 0.169 0.831 51 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.635 3.310 -19.753 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C 0.022 3.978 4 C -0.167 4.167 5 C -0.072 4.072 6 C 0.337 3.663 7 O -0.453 6.453 8 N -0.324 5.324 9 C -0.031 4.031 10 C -0.160 4.160 11 C -0.097 4.097 12 H 0.106 0.894 13 C -0.203 4.203 14 C -0.108 4.108 15 H 0.069 0.931 16 C 0.031 3.969 17 N -0.391 5.391 18 C -0.377 4.377 19 H 0.097 0.903 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.804 3.196 23 H -0.201 1.201 24 H -0.224 1.224 25 H -0.202 1.202 26 C 0.004 3.996 27 C -0.180 4.180 28 C 0.141 3.859 29 O -0.292 6.292 30 N -0.222 5.222 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.160 0.840 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.044 0.956 46 H 0.202 0.798 47 H 0.059 0.941 48 H 0.097 0.903 49 H 0.073 0.927 50 H 0.186 0.814 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -20.046 3.038 -19.774 28.321 hybrid contribution 2.224 -0.291 1.159 2.524 sum -17.822 2.746 -18.616 25.918 Atomic orbital electron populations 1.21646 0.93328 1.02840 1.01907 1.20677 0.97567 0.88310 1.04810 1.21273 0.91590 0.96720 0.88227 1.22154 0.98664 0.94990 1.00914 1.20047 0.96392 0.95153 0.95628 1.18721 0.85207 0.80633 0.81695 1.90857 1.29318 1.57769 1.67329 1.48159 1.28083 1.22211 1.33946 1.22439 0.85839 0.96173 0.98619 1.21978 0.98278 1.01899 0.93891 1.21088 0.94184 0.97897 0.96489 0.89352 1.21856 0.99917 1.01611 0.96875 1.21569 0.96140 0.99349 0.93720 0.93133 1.20917 0.89493 0.91714 0.94784 1.42668 1.36075 1.15596 1.44734 1.19620 1.07484 0.98940 1.11635 0.90294 1.25642 1.02168 0.96277 1.03038 1.69855 1.38518 1.07081 1.46810 0.85178 0.78636 0.76581 0.79161 1.20103 1.22403 1.20227 1.21506 0.92223 0.99951 0.85872 1.22347 0.97937 1.02133 0.95548 1.18980 0.90277 0.86290 0.90399 1.84750 1.55533 1.60735 1.28139 1.66870 1.25194 1.04136 1.25967 0.92496 0.90369 0.93412 0.88509 0.88646 0.83984 0.88172 0.88027 0.87083 0.92620 0.92995 0.90227 0.93680 0.94791 0.95644 0.79845 0.94139 0.90303 0.92701 0.81402 0.71477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.77 71.98 0.70 -1.16 16 2 C -0.08 -1.09 6.33 29.85 0.19 -0.90 16 3 C 0.16 3.16 6.18 42.50 0.26 3.42 16 4 C -0.15 -3.38 9.44 22.63 0.21 -3.17 16 5 C -0.06 -1.49 5.04 -19.90 -0.10 -1.59 16 6 C 0.55 17.56 7.30 86.88 0.63 18.20 16 7 O -0.57 -24.66 16.48 -3.76 -0.06 -24.72 16 8 N -0.59 -16.40 2.97 -821.95 -2.44 -18.84 16 9 C 0.09 1.58 5.41 86.36 0.47 2.05 16 10 C -0.12 -2.09 5.36 30.67 0.16 -1.92 16 11 C -0.08 -1.68 2.23 -10.77 -0.02 -1.71 16 12 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 13 C -0.15 -3.01 8.82 71.98 0.63 -2.38 16 14 C -0.09 -2.83 1.92 -10.71 -0.02 -2.85 16 15 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 16 C 0.16 6.24 5.41 86.38 0.47 6.71 16 17 N -0.75 -39.53 5.38 -343.46 -1.85 -41.38 16 18 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 21 N -0.97 -62.68 13.06 21.65 0.28 -62.40 16 22 Si 0.98 47.53 29.55 68.60 2.03 49.56 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 26 C 0.13 4.32 5.51 86.36 0.48 4.80 16 27 C -0.16 -2.86 7.41 22.75 0.17 -2.69 16 28 C 0.32 5.72 7.74 84.78 0.66 6.37 16 29 O -0.48 -6.36 13.56 -90.00 -1.22 -7.58 16 30 N -0.50 -10.20 9.87 -297.16 -2.93 -13.14 16 31 H 0.06 0.87 7.94 -2.39 -0.02 0.85 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.17 7.86 -2.39 -0.02 1.15 16 36 H 0.14 3.34 7.94 -2.91 -0.02 3.32 16 37 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 1.57 4.52 -2.38 -0.01 1.56 16 39 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.05 1.22 6.30 -2.39 -0.02 1.21 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.03 1.33 6.15 -2.38 -0.01 1.31 16 45 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.37 21.49 6.89 -92.71 -0.64 20.85 16 47 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 48 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.05 2.46 6.23 -2.39 -0.01 2.44 16 50 H 0.17 2.27 7.07 -2.91 -0.02 2.25 16 51 H 0.42 1.46 9.06 -74.06 -0.67 0.79 16 Total: -1.00 -80.47 405.34 -0.35 -80.82 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: -0.35 Total: 32.02 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.20 Total: 5.66 kcal Atomic # 7 Polarization: -128.81 SS G_CDS: -6.94 Total: -135.75 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.28 Total: -32.30 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -80.47 -0.35 -80.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132987151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.754 kcal (2) G-P(sol) polarization free energy of solvation -80.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds