Wall clock time and date at job start Wed Apr 1 2020 04:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50693 * 109.47477 * 2 1 4 4 C 1.38351 * 120.27547 * 89.99674 * 3 2 1 5 5 N 1.31886 * 121.18889 * 180.02562 * 4 3 2 6 6 C 1.32235 * 121.79812 * 0.02562 * 5 4 3 7 7 O 1.35427 * 119.79567 * 179.97438 * 6 5 4 8 8 C 1.40277 * 120.40180 * 0.02562 * 6 5 4 9 9 C 1.47524 * 120.59683 * 179.97438 * 8 6 5 10 10 O 1.21591 * 120.00039 * 306.73178 * 9 8 6 11 11 N 1.34780 * 119.99703 * 126.73495 * 9 8 6 12 12 C 1.46930 * 120.62637 * 183.62284 * 11 9 8 13 13 C 1.53619 * 108.54275 * 126.37172 * 12 11 9 14 14 C 1.53042 * 109.24578 * 54.84788 * 13 12 11 15 15 H 1.08996 * 109.46315 * 178.48903 * 14 13 12 16 16 C 1.53005 * 109.44458 * 58.53086 * 14 13 12 17 17 C 1.53038 * 109.54049 * 298.51736 * 14 13 12 18 18 H 1.09004 * 109.49378 * 301.41007 * 17 14 13 19 19 C 1.53000 * 109.52483 * 181.33119 * 17 14 13 20 20 N 1.46499 * 109.47165 * 175.14360 * 19 17 14 21 21 C 1.36933 * 119.99714 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00639 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99668 * 179.97438 * 21 20 19 24 24 N 1.31611 * 120.00311 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99967 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47134 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46861 * 120.00174 * 25 23 21 28 28 H 1.48499 * 109.47255 * 240.00256 * 25 23 21 29 29 C 1.46922 * 120.63328 * 3.90327 * 11 9 8 30 30 C 1.38336 * 120.26955 * 270.02109 * 3 2 1 31 31 H 1.09003 * 109.46778 * 300.00943 * 1 2 3 32 32 H 1.09003 * 109.46441 * 59.99948 * 1 2 3 33 33 H 1.08994 * 109.47244 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47153 * 239.99391 * 2 1 3 35 35 H 1.09007 * 109.46833 * 119.99760 * 2 1 3 36 36 H 1.08005 * 119.40801 * 0.02562 * 4 3 2 37 37 H 0.96700 * 113.99366 * 90.01145 * 7 6 5 38 38 H 1.09007 * 109.58312 * 246.20236 * 12 11 9 39 39 H 1.08997 * 109.58916 * 6.62118 * 12 11 9 40 40 H 1.09007 * 109.63160 * 294.85860 * 13 12 11 41 41 H 1.09000 * 109.45795 * 174.74116 * 13 12 11 42 42 H 1.09000 * 109.46693 * 299.93292 * 16 14 13 43 43 H 1.09000 * 109.47607 * 59.93371 * 16 14 13 44 44 H 1.09000 * 109.47121 * 179.97438 * 16 14 13 45 45 H 1.09007 * 109.46879 * 295.14506 * 19 17 14 46 46 H 1.08997 * 109.47440 * 55.14025 * 19 17 14 47 47 H 0.96994 * 120.00207 * 0.02562 * 20 19 17 48 48 H 0.96996 * 120.00297 * 179.97438 * 24 23 21 49 49 H 1.09008 * 109.58541 * 353.36925 * 29 11 9 50 50 H 1.08999 * 109.59146 * 113.79546 * 29 11 9 51 51 H 1.08004 * 120.82720 * 359.95227 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2649 2.0783 1.1948 5 7 2.7041 3.3218 1.2158 6 6 2.9414 3.9958 0.1032 7 8 3.3914 5.2713 0.1721 8 6 2.7289 3.3981 -1.1479 9 6 2.9918 4.1463 -2.3919 10 8 2.4815 5.2362 -2.5651 11 7 3.7975 3.6215 -3.3364 12 6 4.1321 4.3876 -4.5447 13 6 5.6612 4.4374 -4.6837 14 6 6.2156 3.0110 -4.6705 15 1 7.2979 3.0408 -4.7959 16 6 5.5918 2.2114 -5.8161 17 6 5.8750 2.3417 -3.3370 18 1 6.2981 2.9247 -2.5189 19 6 6.4580 0.9274 -3.3111 20 7 6.2322 0.3302 -1.9925 21 6 6.6701 -0.9409 -1.7326 22 1 7.1823 -1.5031 -2.4994 23 6 6.4566 -1.5066 -0.4830 24 7 5.8328 -0.8214 0.4517 25 14 7.0533 -3.2409 -0.1286 26 1 7.7189 -3.7919 -1.3364 27 1 8.0198 -3.2111 0.9986 28 1 5.8962 -4.0981 0.2340 29 6 4.3528 2.2703 -3.1802 30 6 2.2645 2.0783 -1.1948 31 1 -0.3633 0.5140 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 2.0835 1.5642 2.1272 37 1 4.3552 5.3477 0.1916 38 1 3.6987 3.9001 -5.4181 39 1 3.7386 5.4002 -4.4560 40 1 6.0863 5.0006 -3.8528 41 1 5.9247 4.9216 -5.6240 42 1 4.5094 2.1809 -5.6906 43 1 5.8342 2.6879 -6.7660 44 1 5.9867 1.1955 -5.8074 45 1 5.9708 0.3196 -4.0736 46 1 7.5285 0.9719 -3.5112 47 1 5.7718 0.8349 -1.3039 48 1 5.6833 -1.2168 1.3247 49 1 4.1051 1.8855 -2.1908 50 1 3.9371 1.6137 -3.9445 51 1 2.0909 1.5860 -2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133209551.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:06 Heat of formation + Delta-G solvation = -34.866096 kcal Electronic energy + Delta-G solvation = -32827.486568 eV Core-core repulsion = 28727.127881 eV Total energy + Delta-G solvation = -4100.358687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.01383 -39.73111 -38.00673 -37.19172 -34.83709 -34.11640 -33.80948 -32.47452 -31.58955 -29.86223 -29.01047 -27.68380 -25.65267 -25.36360 -24.07211 -23.74218 -23.24304 -21.92817 -20.97754 -19.82922 -18.82268 -18.16644 -17.38563 -16.99120 -16.88101 -16.16188 -15.84288 -15.11167 -14.97777 -14.91318 -14.64870 -14.27422 -13.93971 -13.82522 -13.63698 -13.50203 -13.20829 -13.11274 -12.99436 -12.93333 -12.63279 -12.51379 -11.97845 -11.92659 -11.76638 -11.69856 -11.40004 -11.27885 -11.09031 -11.01615 -10.90314 -10.88602 -10.70709 -10.42010 -10.27430 -10.04854 -9.96634 -9.73386 -9.51390 -9.20849 -8.94756 -8.63167 -8.46390 -6.99445 -5.83138 -3.12111 0.87422 1.25789 2.70780 3.02561 3.37043 3.44218 3.45352 3.55334 3.92332 4.41972 4.51107 4.73935 4.78520 4.84772 4.87598 4.88955 4.98597 5.09420 5.16645 5.29688 5.36238 5.37655 5.46451 5.48602 5.51816 5.55797 5.64551 5.66910 5.70553 5.73423 5.82297 5.92484 5.93895 5.97142 5.98488 6.01054 6.05588 6.22408 6.26223 6.27955 6.30835 6.40467 6.41220 6.55516 6.60278 6.67424 6.78777 7.39879 7.56925 7.64560 7.98911 8.20309 8.34209 9.46274 10.01938 10.36867 11.38649 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007398 B = 0.005464 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3783.730913 B = 5123.291861 C = 7621.006796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.125 4.125 4 C 0.153 3.847 5 N -0.499 5.499 6 C 0.346 3.654 7 O -0.471 6.471 8 C -0.193 4.193 9 C 0.571 3.429 10 O -0.529 6.529 11 N -0.604 5.604 12 C 0.111 3.889 13 C -0.127 4.127 14 C -0.085 4.085 15 H 0.074 0.926 16 C -0.153 4.153 17 C -0.102 4.102 18 H 0.072 0.928 19 C 0.159 3.841 20 N -0.732 5.732 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.009 4.009 24 N -0.927 5.927 25 Si 0.902 3.098 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.105 3.895 30 C -0.027 4.027 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.162 0.838 37 H 0.399 0.601 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.025 0.975 46 H 0.022 0.978 47 H 0.381 0.619 48 H 0.254 0.746 49 H 0.099 0.901 50 H 0.073 0.927 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 6.318 -7.423 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.127 4.127 4 C -0.005 4.005 5 N -0.216 5.216 6 C 0.167 3.833 7 O -0.278 6.278 8 C -0.199 4.199 9 C 0.358 3.642 10 O -0.406 6.406 11 N -0.337 5.337 12 C -0.011 4.011 13 C -0.166 4.166 14 C -0.104 4.104 15 H 0.092 0.908 16 C -0.210 4.210 17 C -0.122 4.122 18 H 0.091 0.909 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.205 4.205 24 N -0.575 5.575 25 Si 0.733 3.267 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.219 1.219 29 C -0.017 4.017 30 C -0.053 4.053 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.179 0.821 37 H 0.257 0.743 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.042 0.958 46 H 0.040 0.960 47 H 0.215 0.785 48 H 0.064 0.936 49 H 0.117 0.883 50 H 0.091 0.909 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.861 7.375 -6.786 12.146 hybrid contribution 0.811 -1.403 -0.223 1.636 sum -6.050 5.972 -7.010 11.018 Atomic orbital electron populations 1.21785 0.94994 1.01803 1.01824 1.20446 0.95192 0.91233 1.04738 1.20759 1.00527 0.98127 0.93321 1.22558 0.91538 0.88383 0.98003 1.67235 1.14321 1.09034 1.31015 1.18948 0.93827 0.84173 0.86383 1.84744 1.27462 1.20031 1.95572 1.20817 1.09099 0.95660 0.94351 1.17955 0.78721 0.85071 0.82460 1.90780 1.50186 1.20830 1.78777 1.48107 1.47929 1.17422 1.20225 1.21713 0.95410 0.97484 0.86459 1.22015 0.95058 0.97237 1.02262 1.21078 1.00330 0.94081 0.94914 0.90788 1.21990 1.01075 1.00651 0.97277 1.21687 0.94743 0.98458 0.97281 0.90937 1.20707 0.96948 0.89698 0.89550 1.42371 1.70109 1.15489 1.09652 1.19224 1.30350 0.90767 0.96792 0.91265 1.24680 1.01307 0.98220 0.96310 1.69654 1.46915 1.36744 1.04208 0.86203 0.77982 0.84713 0.77777 1.20685 1.21958 1.21871 1.22142 0.93918 0.81745 1.03857 1.21492 0.93383 0.91245 0.99135 0.92702 0.92886 0.92154 0.90051 0.89831 0.82062 0.74349 0.91240 0.89246 0.91562 0.90829 0.92483 0.93036 0.91797 0.95768 0.96028 0.78493 0.93644 0.88348 0.90916 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.90 37.16 0.37 -1.16 16 2 C -0.08 -1.00 6.08 -27.88 -0.17 -1.17 16 3 C -0.13 -1.83 5.14 -104.55 -0.54 -2.36 16 4 C 0.15 2.33 10.84 -17.49 -0.19 2.14 16 5 N -0.50 -8.51 10.37 -12.98 -0.13 -8.65 16 6 C 0.35 5.90 7.75 -16.61 -0.13 5.77 16 7 O -0.47 -7.55 12.75 -21.72 -0.28 -7.83 16 8 C -0.19 -3.13 4.93 -104.69 -0.52 -3.64 16 9 C 0.57 9.32 6.90 -12.47 -0.09 9.24 16 10 O -0.53 -10.08 16.16 1.54 0.02 -10.05 16 11 N -0.60 -8.42 2.97 -173.73 -0.52 -8.94 16 12 C 0.11 1.32 5.98 -3.49 -0.02 1.30 16 13 C -0.13 -1.35 5.64 -26.39 -0.15 -1.50 16 14 C -0.08 -0.99 2.71 -90.58 -0.25 -1.24 16 15 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.15 -1.62 8.11 37.16 0.30 -1.32 16 17 C -0.10 -1.50 2.15 -90.50 -0.19 -1.69 16 18 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 19 C 0.16 2.87 5.19 -4.04 -0.02 2.85 16 20 N -0.73 -16.80 5.38 -59.91 -0.32 -17.12 16 21 C -0.24 -6.24 9.99 -15.06 -0.15 -6.39 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -25.59 13.06 55.49 0.72 -24.86 16 25 Si 0.90 21.23 29.55 -169.99 -5.02 16.20 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 29 C 0.11 1.51 4.14 -3.71 -0.02 1.50 16 30 C -0.03 -0.39 7.22 -38.89 -0.28 -0.68 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 35 H 0.08 1.10 8.09 -51.92 -0.42 0.68 16 36 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 37 H 0.40 4.66 9.06 45.56 0.41 5.08 16 38 H 0.07 0.73 6.69 -51.93 -0.35 0.39 16 39 H 0.09 1.14 7.02 -51.93 -0.36 0.78 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.61 4.96 -51.93 -0.26 0.35 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 45 H 0.02 0.44 6.73 -51.92 -0.35 0.09 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.38 9.26 6.89 -40.82 -0.28 8.98 16 48 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 49 H 0.10 1.61 3.89 -51.92 -0.20 1.41 16 50 H 0.07 0.99 6.69 -51.93 -0.35 0.64 16 51 H 0.14 1.85 7.35 -52.48 -0.39 1.47 16 LS Contribution 399.26 15.07 6.02 6.02 Total: -1.00 -31.83 399.26 -8.72 -40.55 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -7.08 Total: 13.38 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.13 Total: 1.30 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.25 Total: -59.57 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.25 Total: -17.88 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.83 -8.72 -40.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133209551.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.684 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds