Wall clock time and date at job start Wed Apr 1 2020 04:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50693 * 109.47477 * 2 1 4 4 C 1.38351 * 120.27547 * 89.99674 * 3 2 1 5 5 N 1.31886 * 121.18889 * 180.02562 * 4 3 2 6 6 C 1.32235 * 121.79812 * 0.02562 * 5 4 3 7 7 O 1.35427 * 119.79567 * 179.97438 * 6 5 4 8 8 C 1.40277 * 120.40180 * 0.02562 * 6 5 4 9 9 C 1.47524 * 120.59683 * 179.97438 * 8 6 5 10 10 O 1.21591 * 120.00039 * 306.73178 * 9 8 6 11 11 N 1.34780 * 119.99703 * 126.73495 * 9 8 6 12 12 C 1.46930 * 120.62637 * 183.62284 * 11 9 8 13 13 C 1.53619 * 108.54275 * 126.37172 * 12 11 9 14 14 C 1.53042 * 109.24578 * 54.84788 * 13 12 11 15 15 H 1.08996 * 109.46315 * 178.48903 * 14 13 12 16 16 C 1.53005 * 109.44458 * 58.53086 * 14 13 12 17 17 C 1.53038 * 109.54049 * 298.51736 * 14 13 12 18 18 H 1.09004 * 109.49378 * 301.41007 * 17 14 13 19 19 C 1.53000 * 109.52483 * 181.33119 * 17 14 13 20 20 N 1.46499 * 109.47165 * 175.14360 * 19 17 14 21 21 C 1.36933 * 119.99714 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00639 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99668 * 179.97438 * 21 20 19 24 24 N 1.31611 * 120.00311 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99967 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47134 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46861 * 120.00174 * 25 23 21 28 28 H 1.48499 * 109.47255 * 240.00256 * 25 23 21 29 29 C 1.46922 * 120.63328 * 3.90327 * 11 9 8 30 30 C 1.38336 * 120.26955 * 270.02109 * 3 2 1 31 31 H 1.09003 * 109.46778 * 300.00943 * 1 2 3 32 32 H 1.09003 * 109.46441 * 59.99948 * 1 2 3 33 33 H 1.08994 * 109.47244 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47153 * 239.99391 * 2 1 3 35 35 H 1.09007 * 109.46833 * 119.99760 * 2 1 3 36 36 H 1.08005 * 119.40801 * 0.02562 * 4 3 2 37 37 H 0.96700 * 113.99366 * 90.01145 * 7 6 5 38 38 H 1.09007 * 109.58312 * 246.20236 * 12 11 9 39 39 H 1.08997 * 109.58916 * 6.62118 * 12 11 9 40 40 H 1.09007 * 109.63160 * 294.85860 * 13 12 11 41 41 H 1.09000 * 109.45795 * 174.74116 * 13 12 11 42 42 H 1.09000 * 109.46693 * 299.93292 * 16 14 13 43 43 H 1.09000 * 109.47607 * 59.93371 * 16 14 13 44 44 H 1.09000 * 109.47121 * 179.97438 * 16 14 13 45 45 H 1.09007 * 109.46879 * 295.14506 * 19 17 14 46 46 H 1.08997 * 109.47440 * 55.14025 * 19 17 14 47 47 H 0.96994 * 120.00207 * 0.02562 * 20 19 17 48 48 H 0.96996 * 120.00297 * 179.97438 * 24 23 21 49 49 H 1.09008 * 109.58541 * 353.36925 * 29 11 9 50 50 H 1.08999 * 109.59146 * 113.79546 * 29 11 9 51 51 H 1.08004 * 120.82720 * 359.95227 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2649 2.0783 1.1948 5 7 2.7041 3.3218 1.2158 6 6 2.9414 3.9958 0.1032 7 8 3.3914 5.2713 0.1721 8 6 2.7289 3.3981 -1.1479 9 6 2.9918 4.1463 -2.3919 10 8 2.4815 5.2362 -2.5651 11 7 3.7975 3.6215 -3.3364 12 6 4.1321 4.3876 -4.5447 13 6 5.6612 4.4374 -4.6837 14 6 6.2156 3.0110 -4.6705 15 1 7.2979 3.0408 -4.7959 16 6 5.5918 2.2114 -5.8161 17 6 5.8750 2.3417 -3.3370 18 1 6.2981 2.9247 -2.5189 19 6 6.4580 0.9274 -3.3111 20 7 6.2322 0.3302 -1.9925 21 6 6.6701 -0.9409 -1.7326 22 1 7.1823 -1.5031 -2.4994 23 6 6.4566 -1.5066 -0.4830 24 7 5.8328 -0.8214 0.4517 25 14 7.0533 -3.2409 -0.1286 26 1 7.7189 -3.7919 -1.3364 27 1 8.0198 -3.2111 0.9986 28 1 5.8962 -4.0981 0.2340 29 6 4.3528 2.2703 -3.1802 30 6 2.2645 2.0783 -1.1948 31 1 -0.3633 0.5140 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 2.0835 1.5642 2.1272 37 1 4.3552 5.3477 0.1916 38 1 3.6987 3.9001 -5.4181 39 1 3.7386 5.4002 -4.4560 40 1 6.0863 5.0006 -3.8528 41 1 5.9247 4.9216 -5.6240 42 1 4.5094 2.1809 -5.6906 43 1 5.8342 2.6879 -6.7660 44 1 5.9867 1.1955 -5.8074 45 1 5.9708 0.3196 -4.0736 46 1 7.5285 0.9719 -3.5112 47 1 5.7718 0.8349 -1.3039 48 1 5.6833 -1.2168 1.3247 49 1 4.1051 1.8855 -2.1908 50 1 3.9371 1.6137 -3.9445 51 1 2.0909 1.5860 -2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133209551.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:05 Heat of formation + Delta-G solvation = -57.119453 kcal Electronic energy + Delta-G solvation = -32828.451546 eV Core-core repulsion = 28727.127881 eV Total energy + Delta-G solvation = -4101.323665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.22268 -40.89730 -39.26155 -38.40662 -36.46891 -35.24728 -34.99665 -33.91246 -32.95729 -31.35981 -30.10819 -28.74068 -27.15718 -26.49395 -25.27736 -24.92830 -24.72818 -23.13107 -22.22814 -21.05662 -20.02907 -19.41459 -18.89105 -18.41666 -18.12146 -17.37261 -17.03037 -16.72215 -16.15318 -16.02613 -15.84500 -15.62422 -15.35543 -15.09833 -14.82077 -14.64821 -14.50653 -14.42339 -14.26790 -14.14932 -13.80993 -13.75125 -13.09748 -12.98241 -12.97027 -12.88010 -12.85523 -12.66638 -12.47174 -12.31542 -12.11151 -12.00673 -11.88243 -11.86174 -11.75049 -11.41832 -11.25941 -11.21405 -10.87622 -10.73248 -10.44043 -9.82865 -9.61954 -8.89890 -7.85645 -5.13662 -0.34694 0.05353 1.44463 1.50093 1.52884 1.60057 1.85690 2.37826 2.60692 2.70667 3.21902 3.47356 3.59742 3.67043 3.70716 3.80949 3.85803 3.87602 4.04205 4.09193 4.16137 4.26592 4.29904 4.42770 4.47262 4.49208 4.52045 4.61348 4.66900 4.74626 4.76004 4.81568 4.83760 4.91496 4.93060 4.97490 5.13129 5.15305 5.15982 5.22368 5.30605 5.30881 5.35427 5.39376 5.48363 5.51309 5.58895 5.60749 6.18362 6.34510 6.43274 6.77015 6.96264 7.42489 8.15532 8.39877 9.35867 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007398 B = 0.005464 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3783.730913 B = 5123.291861 C = 7621.006796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 C -0.127 4.127 4 C 0.143 3.857 5 N -0.519 5.519 6 C 0.329 3.671 7 O -0.482 6.482 8 C -0.203 4.203 9 C 0.572 3.428 10 O -0.561 6.561 11 N -0.594 5.594 12 C 0.107 3.893 13 C -0.119 4.119 14 C -0.080 4.080 15 H 0.079 0.921 16 C -0.150 4.150 17 C -0.092 4.092 18 H 0.052 0.948 19 C 0.161 3.839 20 N -0.741 5.741 21 C -0.243 4.243 22 H 0.071 0.929 23 C -0.060 4.060 24 N -0.952 5.952 25 Si 0.958 3.042 26 H -0.272 1.272 27 H -0.301 1.301 28 H -0.292 1.292 29 C 0.113 3.887 30 C -0.027 4.027 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.183 0.817 37 H 0.412 0.588 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.018 0.982 47 H 0.372 0.628 48 H 0.249 0.751 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 5.697 -9.411 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.129 4.129 4 C -0.014 4.014 5 N -0.237 5.237 6 C 0.150 3.850 7 O -0.291 6.291 8 C -0.209 4.209 9 C 0.359 3.641 10 O -0.441 6.441 11 N -0.325 5.325 12 C -0.014 4.014 13 C -0.157 4.157 14 C -0.099 4.099 15 H 0.098 0.902 16 C -0.207 4.207 17 C -0.112 4.112 18 H 0.071 0.929 19 C 0.034 3.966 20 N -0.384 5.384 21 C -0.375 4.375 22 H 0.089 0.911 23 C -0.254 4.254 24 N -0.602 5.602 25 Si 0.789 3.211 26 H -0.197 1.197 27 H -0.229 1.229 28 H -0.219 1.219 29 C -0.009 4.009 30 C -0.053 4.053 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.200 0.800 37 H 0.272 0.728 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.036 0.964 47 H 0.204 0.796 48 H 0.058 0.942 49 H 0.096 0.904 50 H 0.104 0.896 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.796 6.747 -8.831 13.027 hybrid contribution 0.867 -1.215 0.352 1.534 sum -5.928 5.532 -8.480 11.733 Atomic orbital electron populations 1.21742 0.92849 1.02877 1.02247 1.20444 0.96952 0.89798 1.04019 1.20999 0.99922 0.98877 0.93065 1.22985 0.91152 0.88058 0.99248 1.67244 1.15175 1.09915 1.31333 1.19147 0.94541 0.84489 0.86832 1.84695 1.28895 1.19935 1.95607 1.20894 1.09607 0.96245 0.94192 1.17966 0.78766 0.84613 0.82713 1.90757 1.51733 1.22113 1.79451 1.48106 1.46791 1.17274 1.20362 1.21949 0.96469 0.97015 0.85998 1.21977 0.93740 0.96501 1.03480 1.21057 1.00927 0.94553 0.93323 0.90229 1.21964 1.00880 1.00090 0.97719 1.21553 0.94528 0.96362 0.98734 0.92916 1.20822 0.96947 0.91462 0.87373 1.42523 1.69814 1.14775 1.11248 1.19525 1.29409 0.91852 0.96713 0.91119 1.25311 1.02264 1.01272 0.96505 1.69782 1.48262 1.37895 1.04241 0.85313 0.77174 0.81292 0.77356 1.19691 1.22872 1.21901 1.22017 0.93768 0.81991 1.03170 1.21681 0.92832 0.90827 0.99919 0.92104 0.92644 0.90740 0.90957 0.90285 0.80020 0.72754 0.89084 0.90029 0.92613 0.87779 0.92398 0.90693 0.92693 0.94756 0.96371 0.79558 0.94209 0.90407 0.89563 0.82835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.90 71.98 0.71 -2.01 16 2 C -0.07 -1.87 6.08 29.85 0.18 -1.69 16 3 C -0.13 -3.70 5.14 -19.82 -0.10 -3.81 16 4 C 0.14 4.40 10.84 84.71 0.92 5.32 16 5 N -0.52 -18.15 10.37 -308.00 -3.19 -21.34 16 6 C 0.33 11.54 7.75 85.13 0.66 12.20 16 7 O -0.48 -15.98 12.75 -83.64 -1.07 -17.04 16 8 C -0.20 -6.70 4.93 -19.91 -0.10 -6.79 16 9 C 0.57 18.70 6.90 86.69 0.60 19.30 16 10 O -0.56 -21.52 16.16 -0.42 -0.01 -21.53 16 11 N -0.59 -15.99 2.97 -821.82 -2.44 -18.43 16 12 C 0.11 2.30 5.98 86.51 0.52 2.82 16 13 C -0.12 -2.20 5.64 30.82 0.17 -2.03 16 14 C -0.08 -1.65 2.71 -10.77 -0.03 -1.68 16 15 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 16 C -0.15 -2.65 8.11 71.98 0.58 -2.07 16 17 C -0.09 -2.60 2.15 -10.72 -0.02 -2.62 16 18 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 19 C 0.16 5.63 5.19 86.38 0.45 6.08 16 20 N -0.74 -33.91 5.38 -343.45 -1.85 -35.75 16 21 C -0.24 -12.52 9.99 84.04 0.84 -11.68 16 22 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 23 C -0.06 -3.18 5.50 84.86 0.47 -2.72 16 24 N -0.95 -53.01 13.06 21.65 0.28 -52.73 16 25 Si 0.96 43.48 29.55 68.60 2.03 45.50 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 28 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 29 C 0.11 3.12 4.14 86.36 0.36 3.48 16 30 C -0.03 -0.80 7.22 22.72 0.16 -0.63 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 35 H 0.08 2.06 8.09 -2.38 -0.02 2.04 16 36 H 0.18 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.41 10.15 9.06 -74.06 -0.67 9.48 16 38 H 0.09 1.62 6.69 -2.38 -0.02 1.60 16 39 H 0.08 1.96 7.02 -2.39 -0.02 1.94 16 40 H 0.06 1.17 8.14 -2.38 -0.02 1.16 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.02 4.96 -2.39 -0.01 1.01 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 1.09 6.57 -2.39 -0.02 1.07 16 45 H 0.03 1.16 6.73 -2.38 -0.02 1.15 16 46 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.37 18.32 6.89 -92.71 -0.64 17.68 16 48 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 49 H 0.08 2.54 3.89 -2.38 -0.01 2.54 16 50 H 0.09 2.18 6.69 -2.39 -0.02 2.17 16 51 H 0.15 4.01 7.35 -2.91 -0.02 3.99 16 Total: -1.00 -68.12 399.26 -0.21 -68.34 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.34 Total: 41.53 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.37 Total: 11.46 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -7.20 Total: -128.26 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.07 Total: -38.57 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.12 -0.21 -68.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133209551.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.216 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds