Wall clock time and date at job start Wed Apr 1 2020 04:58:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50704 * 109.47425 * 2 1
4 4 C 1.38355 * 120.27042 * 89.99735 * 3 2 1
5 5 N 1.31876 * 121.18773 * 179.97438 * 4 3 2
6 6 C 1.32238 * 121.79761 * 0.02601 * 5 4 3
7 7 O 1.35423 * 119.79806 * 180.02562 * 6 5 4
8 8 C 1.40280 * 120.40127 * 359.97438 * 6 5 4
9 9 C 1.47525 * 120.59408 * 180.02562 * 8 6 5
10 10 O 1.21590 * 120.00033 * 314.63333 * 9 8 6
11 11 N 1.34781 * 119.99631 * 134.63895 * 9 8 6
12 12 C 1.46923 * 120.63335 * 354.45317 * 11 9 8
13 13 C 1.53184 * 108.77646 * 233.88421 * 12 11 9
14 14 C 1.53035 * 109.31888 * 305.36847 * 13 12 11
15 15 H 1.09007 * 109.45960 * 301.34609 * 14 13 12
16 16 C 1.53001 * 109.45336 * 181.37770 * 14 13 12
17 17 C 1.53045 * 109.53695 * 61.36118 * 14 13 12
18 18 H 1.08994 * 109.49611 * 58.59255 * 17 14 13
19 19 C 1.53002 * 109.49660 * 178.68946 * 17 14 13
20 20 N 1.46501 * 109.47236 * 184.84150 * 19 17 14
21 21 C 1.36931 * 119.99962 * 180.02562 * 20 19 17
22 22 H 1.07997 * 120.00383 * 359.97438 * 21 20 19
23 23 C 1.38815 * 119.99911 * 180.02562 * 21 20 19
24 24 N 1.31614 * 120.00206 * 179.97438 * 23 21 20
25 25 Si 1.86794 * 119.99910 * 359.97438 * 23 21 20
26 26 H 1.48501 * 109.47312 * 90.00334 * 25 23 21
27 27 H 1.48503 * 109.47435 * 210.00360 * 25 23 21
28 28 H 1.48509 * 109.47225 * 330.00451 * 25 23 21
29 29 C 1.46927 * 120.62786 * 174.73838 * 11 9 8
30 30 C 1.38343 * 120.27217 * 270.28620 * 3 2 1
31 31 H 1.09006 * 109.46675 * 299.99878 * 1 2 3
32 32 H 1.09003 * 109.47414 * 59.99812 * 1 2 3
33 33 H 1.08997 * 109.47308 * 180.02562 * 1 2 3
34 34 H 1.09006 * 109.46675 * 240.00122 * 2 1 3
35 35 H 1.09003 * 109.47414 * 120.00188 * 2 1 3
36 36 H 1.08003 * 119.40592 * 0.02562 * 4 3 2
37 37 H 0.96701 * 114.00060 * 269.97147 * 7 6 5
38 38 H 1.08993 * 109.58715 * 353.67722 * 12 11 9
39 39 H 1.09003 * 109.58503 * 114.09803 * 12 11 9
40 40 H 1.09006 * 109.49914 * 185.41074 * 13 12 11
41 41 H 1.09009 * 109.52538 * 65.33582 * 13 12 11
42 42 H 1.08994 * 109.46810 * 299.93608 * 16 14 13
43 43 H 1.08997 * 109.46711 * 59.94159 * 16 14 13
44 44 H 1.09005 * 109.46849 * 179.97438 * 16 14 13
45 45 H 1.09008 * 109.47082 * 304.83656 * 19 17 14
46 46 H 1.08998 * 109.47212 * 64.83633 * 19 17 14
47 47 H 0.96998 * 119.99767 * 359.97438 * 20 19 17
48 48 H 0.97003 * 120.00108 * 179.97438 * 24 23 21
49 49 H 1.08999 * 109.58927 * 245.90266 * 29 11 9
50 50 H 1.09005 * 109.58708 * 6.18326 * 29 11 9
51 51 H 1.07998 * 120.82379 * 359.97438 * 30 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 6 2.2649 2.0784 1.1949
5 7 2.7049 3.3213 1.2160
6 6 2.9433 3.9951 0.1034
7 8 3.3952 5.2699 0.1723
8 6 2.7319 3.3971 -1.1478
9 6 2.9969 4.1446 -2.3917
10 8 2.6078 5.2908 -2.5068
11 7 3.6702 3.5569 -3.4006
12 6 4.2514 2.2180 -3.2329
13 6 5.7391 2.2776 -3.5931
14 6 5.8965 2.8594 -4.9997
15 1 5.3530 2.2388 -5.7123
16 6 7.3792 2.8885 -5.3761
17 6 5.3346 4.2826 -5.0308
18 1 5.8610 4.8976 -4.3009
19 6 5.5220 4.8752 -6.4289
20 7 5.0901 6.2751 -6.4278
21 6 5.1655 7.0157 -7.5771
22 1 5.5436 6.5680 -8.4843
23 6 4.7568 8.3424 -7.5760
24 7 4.8297 9.0544 -8.6805
25 14 4.1034 9.1170 -6.0068
26 1 5.2275 9.7217 -5.2479
27 1 3.1142 10.1703 -6.3493
28 1 3.4490 8.0748 -5.1755
29 6 3.8422 4.2456 -4.6870
30 6 2.2593 2.0803 -1.1948
31 1 -0.3633 0.5139 0.8901
32 1 -0.3634 0.5139 -0.8900
33 1 -0.3634 -1.0276 0.0005
34 1 1.8933 -0.5139 -0.8901
35 1 1.8934 -0.5139 0.8900
36 1 2.0834 1.5641 2.1272
37 1 2.6938 5.9353 0.1923
38 1 4.1387 1.8978 -2.1971
39 1 3.7437 1.5140 -3.8923
40 1 6.1607 1.2728 -3.5656
41 1 6.2623 2.9112 -2.8767
42 1 7.9227 3.5094 -4.6640
43 1 7.7795 1.8749 -5.3541
44 1 7.4916 3.3024 -6.3782
45 1 6.5740 4.8198 -6.7090
46 1 4.9249 4.3113 -7.1455
47 1 4.7501 6.6772 -5.6132
48 1 4.5437 9.9813 -8.6798
49 1 3.3012 3.7071 -5.4650
50 1 3.4572 5.2626 -4.6113
51 1 2.0812 1.5896 -2.1402
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001133209552.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:58:09
Heat of formation + Delta-G solvation = -33.873728 kcal
Electronic energy + Delta-G solvation = -31628.654281 eV
Core-core repulsion = 27528.338626 eV
Total energy + Delta-G solvation = -4100.315655 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.37789 -39.89357 -38.10366 -37.52706 -35.23406 -34.68616 -33.90406 -32.72011
-31.85243 -30.22302 -29.57005 -28.32562 -26.13747 -25.03666 -24.51410 -23.30584
-23.00561 -22.14690 -21.14587 -20.24052 -19.44986 -18.91299 -17.76228 -17.51353
-17.16717 -16.41572 -16.05960 -15.22902 -15.08612 -14.90075 -14.68608 -14.46030
-14.26382 -14.22519 -14.05828 -13.73658 -13.48823 -13.37041 -13.17960 -13.01665
-12.79519 -12.60953 -12.54710 -12.22805 -12.02677 -11.86023 -11.78603 -11.70484
-11.53589 -11.27620 -11.04119 -10.88046 -10.67111 -10.39203 -10.34477 -10.20518
-10.06650 -9.97279 -9.61802 -9.51566 -9.16327 -8.85662 -8.65844 -7.17570
-5.72059 -3.07410 0.30688 0.66207 2.50438 2.80950 3.11635 3.43079
3.46631 3.53142 3.55566 4.02032 4.17895 4.30058 4.37168 4.52071
4.56912 4.66506 4.73511 4.74471 4.82360 4.85808 4.96979 5.02919
5.12798 5.18264 5.24394 5.33180 5.37424 5.44816 5.48748 5.53738
5.58525 5.60364 5.68978 5.70228 5.73253 5.75361 5.83751 5.85803
5.99546 6.00002 6.10092 6.24357 6.33077 6.35890 6.45934 6.71765
6.77669 7.19009 7.26948 7.48534 8.02715 8.03527 8.46933 9.26207
9.99189 10.18462 11.46151
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012769 B = 0.003090 C = 0.002731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2192.268201 B = 9058.930977 C =10249.725678
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.077 4.077
3 C -0.153 4.153
4 C 0.144 3.856
5 N -0.501 5.501
6 C 0.357 3.643
7 O -0.471 6.471
8 C -0.188 4.188
9 C 0.567 3.433
10 O -0.522 6.522
11 N -0.603 5.603
12 C 0.101 3.899
13 C -0.129 4.129
14 C -0.083 4.083
15 H 0.073 0.927
16 C -0.149 4.149
17 C -0.107 4.107
18 H 0.075 0.925
19 C 0.163 3.837
20 N -0.757 5.757
21 C -0.244 4.244
22 H 0.090 0.910
23 C 0.006 3.994
24 N -0.935 5.935
25 Si 0.879 3.121
26 H -0.284 1.284
27 H -0.291 1.291
28 H -0.272 1.272
29 C 0.119 3.881
30 C -0.030 4.030
31 H 0.057 0.943
32 H 0.057 0.943
33 H 0.062 0.938
34 H 0.077 0.923
35 H 0.079 0.921
36 H 0.163 0.837
37 H 0.411 0.589
38 H 0.082 0.918
39 H 0.072 0.928
40 H 0.075 0.925
41 H 0.067 0.933
42 H 0.053 0.947
43 H 0.050 0.950
44 H 0.067 0.933
45 H 0.036 0.964
46 H 0.027 0.973
47 H 0.362 0.638
48 H 0.259 0.741
49 H 0.072 0.928
50 H 0.099 0.901
51 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.372 -24.609 19.740 32.002
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.115 4.115
3 C -0.155 4.155
4 C -0.014 4.014
5 N -0.219 5.219
6 C 0.178 3.822
7 O -0.280 6.280
8 C -0.195 4.195
9 C 0.354 3.646
10 O -0.398 6.398
11 N -0.335 5.335
12 C -0.022 4.022
13 C -0.167 4.167
14 C -0.102 4.102
15 H 0.092 0.908
16 C -0.206 4.206
17 C -0.126 4.126
18 H 0.093 0.907
19 C 0.036 3.964
20 N -0.403 5.403
21 C -0.374 4.374
22 H 0.108 0.892
23 C -0.190 4.190
24 N -0.583 5.583
25 Si 0.709 3.291
26 H -0.211 1.211
27 H -0.217 1.217
28 H -0.198 1.198
29 C -0.003 4.003
30 C -0.056 4.056
31 H 0.076 0.924
32 H 0.076 0.924
33 H 0.081 0.919
34 H 0.096 0.904
35 H 0.097 0.903
36 H 0.181 0.819
37 H 0.271 0.729
38 H 0.101 0.899
39 H 0.090 0.910
40 H 0.094 0.906
41 H 0.086 0.914
42 H 0.073 0.927
43 H 0.069 0.931
44 H 0.086 0.914
45 H 0.054 0.946
46 H 0.045 0.955
47 H 0.195 0.805
48 H 0.069 0.931
49 H 0.090 0.910
50 H 0.118 0.882
51 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -4.832 -23.673 20.182 31.481
hybrid contribution -0.961 0.585 0.293 1.163
sum -5.793 -23.088 20.475 31.398
Atomic orbital electron populations
1.21791 0.94330 1.02176 1.02468 1.20469 0.96408 0.91018 1.03636
1.20861 1.02610 0.98507 0.93560 1.22625 0.92054 0.88817 0.97866
1.67320 1.13522 1.09773 1.31271 1.19098 0.89875 0.86997 0.86273
1.84653 1.35891 1.12076 1.95368 1.21099 1.06943 0.96634 0.94814
1.17862 0.78540 0.85931 0.82311 1.90834 1.51642 1.16658 1.80692
1.48061 1.53519 1.18111 1.13851 1.21965 0.94448 0.83811 1.01964
1.21992 0.95226 1.01652 0.97859 1.21079 0.97104 0.96056 0.95976
0.90823 1.21888 0.95023 1.01128 1.02559 1.21779 0.95009 0.96119
0.99714 0.90697 1.20703 0.97980 0.85634 0.92107 1.42781 1.78556
1.08309 1.10638 1.19028 1.36224 0.92824 0.89279 0.89240 1.24649
1.01281 0.96469 0.96594 1.69702 1.53739 1.08858 1.25986 0.86619
0.78959 0.79408 0.84102 1.21108 1.21726 1.19787 1.21797 0.96672
0.99418 0.82383 1.21645 0.93135 0.91642 0.99139 0.92389 0.92428
0.91930 0.90430 0.90269 0.81943 0.72868 0.89938 0.91018 0.90633
0.91425 0.92748 0.93077 0.91411 0.94601 0.95523 0.80508 0.93103
0.90966 0.88243 0.83738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.62 9.89 37.16 0.37 -0.25 16
2 C -0.08 -0.31 6.08 -27.88 -0.17 -0.48 16
3 C -0.15 -1.04 5.14 -104.54 -0.54 -1.58 16
4 C 0.14 1.15 10.84 -17.49 -0.19 0.96 16
5 N -0.50 -5.72 10.37 -12.98 -0.13 -5.85 16
6 C 0.36 4.54 7.74 -16.61 -0.13 4.41 16
7 O -0.47 -6.39 12.51 -30.10 -0.38 -6.77 16
8 C -0.19 -2.25 4.95 -104.69 -0.52 -2.77 16
9 C 0.57 8.52 7.04 -12.47 -0.09 8.43 16
10 O -0.52 -9.94 15.81 -6.85 -0.11 -10.05 16
11 N -0.60 -8.01 2.97 -174.01 -0.52 -8.53 16
12 C 0.10 0.94 5.16 -3.72 -0.02 0.92 16
13 C -0.13 -1.23 5.36 -26.62 -0.14 -1.38 16
14 C -0.08 -0.95 2.23 -90.58 -0.20 -1.15 16
15 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16
16 C -0.15 -1.66 8.82 37.16 0.33 -1.33 16
17 C -0.11 -1.64 1.92 -90.50 -0.17 -1.81 16
18 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
19 C 0.16 3.11 5.41 -4.04 -0.02 3.08 16
20 N -0.76 -18.44 5.18 -59.91 -0.31 -18.75 16
21 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16
22 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16
23 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16
24 N -0.93 -30.07 13.97 55.49 0.78 -29.30 16
25 Si 0.88 23.38 27.73 -169.99 -4.71 18.67 16
26 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16
27 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16
28 H -0.27 -7.05 6.52 56.52 0.37 -6.68 16
29 C 0.12 1.86 5.52 -3.71 -0.02 1.84 16
30 C -0.03 -0.25 7.27 -38.89 -0.28 -0.53 16
31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16
32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16
33 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16
34 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16
35 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16
36 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16
37 H 0.41 4.18 9.06 45.56 0.41 4.59 16
38 H 0.08 0.68 4.99 -51.93 -0.26 0.42 16
39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
41 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16
42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
44 H 0.07 0.83 6.30 -51.93 -0.33 0.51 16
45 H 0.04 0.69 6.15 -51.92 -0.32 0.37 16
46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
47 H 0.36 8.92 4.76 -40.82 -0.19 8.72 16
48 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16
49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
50 H 0.10 1.94 6.20 -51.93 -0.32 1.62 16
51 H 0.14 0.96 7.16 -52.49 -0.38 0.58 16
LS Contribution 401.55 15.07 6.05 6.05
Total: -1.00 -36.83 401.55 -8.70 -45.53
By element:
Atomic # 1 Polarization: 15.06 SS G_CDS: -7.31 Total: 7.75 kcal
Atomic # 6 Polarization: 3.29 SS G_CDS: -2.05 Total: 1.24 kcal
Atomic # 7 Polarization: -62.24 SS G_CDS: -0.19 Total: -62.43 kcal
Atomic # 8 Polarization: -16.33 SS G_CDS: -0.48 Total: -16.81 kcal
Atomic # 14 Polarization: 23.38 SS G_CDS: -4.71 Total: 18.67 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -36.83 -8.70 -45.53 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001133209552.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.657 kcal
(2) G-P(sol) polarization free energy of solvation -36.831 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.175 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds