Wall clock time and date at job start Wed Apr 1 2020 04:58:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50704 * 109.47425 * 2 1
4 4 C 1.38355 * 120.27042 * 89.99735 * 3 2 1
5 5 N 1.31876 * 121.18773 * 179.97438 * 4 3 2
6 6 C 1.32238 * 121.79761 * 0.02601 * 5 4 3
7 7 O 1.35423 * 119.79806 * 180.02562 * 6 5 4
8 8 C 1.40280 * 120.40127 * 359.97438 * 6 5 4
9 9 C 1.47525 * 120.59408 * 180.02562 * 8 6 5
10 10 O 1.21590 * 120.00033 * 314.63333 * 9 8 6
11 11 N 1.34781 * 119.99631 * 134.63895 * 9 8 6
12 12 C 1.46923 * 120.63335 * 354.45317 * 11 9 8
13 13 C 1.53184 * 108.77646 * 233.88421 * 12 11 9
14 14 C 1.53035 * 109.31888 * 305.36847 * 13 12 11
15 15 H 1.09007 * 109.45960 * 301.34609 * 14 13 12
16 16 C 1.53001 * 109.45336 * 181.37770 * 14 13 12
17 17 C 1.53045 * 109.53695 * 61.36118 * 14 13 12
18 18 H 1.08994 * 109.49611 * 58.59255 * 17 14 13
19 19 C 1.53002 * 109.49660 * 178.68946 * 17 14 13
20 20 N 1.46501 * 109.47236 * 184.84150 * 19 17 14
21 21 C 1.36931 * 119.99962 * 180.02562 * 20 19 17
22 22 H 1.07997 * 120.00383 * 359.97438 * 21 20 19
23 23 C 1.38815 * 119.99911 * 180.02562 * 21 20 19
24 24 N 1.31614 * 120.00206 * 179.97438 * 23 21 20
25 25 Si 1.86794 * 119.99910 * 359.97438 * 23 21 20
26 26 H 1.48501 * 109.47312 * 90.00334 * 25 23 21
27 27 H 1.48503 * 109.47435 * 210.00360 * 25 23 21
28 28 H 1.48509 * 109.47225 * 330.00451 * 25 23 21
29 29 C 1.46927 * 120.62786 * 174.73838 * 11 9 8
30 30 C 1.38343 * 120.27217 * 270.28620 * 3 2 1
31 31 H 1.09006 * 109.46675 * 299.99878 * 1 2 3
32 32 H 1.09003 * 109.47414 * 59.99812 * 1 2 3
33 33 H 1.08997 * 109.47308 * 180.02562 * 1 2 3
34 34 H 1.09006 * 109.46675 * 240.00122 * 2 1 3
35 35 H 1.09003 * 109.47414 * 120.00188 * 2 1 3
36 36 H 1.08003 * 119.40592 * 0.02562 * 4 3 2
37 37 H 0.96701 * 114.00060 * 269.97147 * 7 6 5
38 38 H 1.08993 * 109.58715 * 353.67722 * 12 11 9
39 39 H 1.09003 * 109.58503 * 114.09803 * 12 11 9
40 40 H 1.09006 * 109.49914 * 185.41074 * 13 12 11
41 41 H 1.09009 * 109.52538 * 65.33582 * 13 12 11
42 42 H 1.08994 * 109.46810 * 299.93608 * 16 14 13
43 43 H 1.08997 * 109.46711 * 59.94159 * 16 14 13
44 44 H 1.09005 * 109.46849 * 179.97438 * 16 14 13
45 45 H 1.09008 * 109.47082 * 304.83656 * 19 17 14
46 46 H 1.08998 * 109.47212 * 64.83633 * 19 17 14
47 47 H 0.96998 * 119.99767 * 359.97438 * 20 19 17
48 48 H 0.97003 * 120.00108 * 179.97438 * 24 23 21
49 49 H 1.08999 * 109.58927 * 245.90266 * 29 11 9
50 50 H 1.09005 * 109.58708 * 6.18326 * 29 11 9
51 51 H 1.07998 * 120.82379 * 359.97438 * 30 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 6 2.2649 2.0784 1.1949
5 7 2.7049 3.3213 1.2160
6 6 2.9433 3.9951 0.1034
7 8 3.3952 5.2699 0.1723
8 6 2.7319 3.3971 -1.1478
9 6 2.9969 4.1446 -2.3917
10 8 2.6078 5.2908 -2.5068
11 7 3.6702 3.5569 -3.4006
12 6 4.2514 2.2180 -3.2329
13 6 5.7391 2.2776 -3.5931
14 6 5.8965 2.8594 -4.9997
15 1 5.3530 2.2388 -5.7123
16 6 7.3792 2.8885 -5.3761
17 6 5.3346 4.2826 -5.0308
18 1 5.8610 4.8976 -4.3009
19 6 5.5220 4.8752 -6.4289
20 7 5.0901 6.2751 -6.4278
21 6 5.1655 7.0157 -7.5771
22 1 5.5436 6.5680 -8.4843
23 6 4.7568 8.3424 -7.5760
24 7 4.8297 9.0544 -8.6805
25 14 4.1034 9.1170 -6.0068
26 1 5.2275 9.7217 -5.2479
27 1 3.1142 10.1703 -6.3493
28 1 3.4490 8.0748 -5.1755
29 6 3.8422 4.2456 -4.6870
30 6 2.2593 2.0803 -1.1948
31 1 -0.3633 0.5139 0.8901
32 1 -0.3634 0.5139 -0.8900
33 1 -0.3634 -1.0276 0.0005
34 1 1.8933 -0.5139 -0.8901
35 1 1.8934 -0.5139 0.8900
36 1 2.0834 1.5641 2.1272
37 1 2.6938 5.9353 0.1923
38 1 4.1387 1.8978 -2.1971
39 1 3.7437 1.5140 -3.8923
40 1 6.1607 1.2728 -3.5656
41 1 6.2623 2.9112 -2.8767
42 1 7.9227 3.5094 -4.6640
43 1 7.7795 1.8749 -5.3541
44 1 7.4916 3.3024 -6.3782
45 1 6.5740 4.8198 -6.7090
46 1 4.9249 4.3113 -7.1455
47 1 4.7501 6.6772 -5.6132
48 1 4.5437 9.9813 -8.6798
49 1 3.3012 3.7071 -5.4650
50 1 3.4572 5.2626 -4.6113
51 1 2.0812 1.5896 -2.1402
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001133209552.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:58:08
Heat of formation + Delta-G solvation = -61.864927 kcal
Electronic energy + Delta-G solvation = -31629.868071 eV
Core-core repulsion = 27528.338626 eV
Total energy + Delta-G solvation = -4101.529445 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.23742 -40.86846 -39.20401 -38.43279 -36.81319 -35.32244 -35.17077 -33.76146
-33.43375 -31.77428 -30.15490 -29.31632 -27.65110 -25.92506 -25.11595 -24.67432
-24.14691 -22.85114 -22.59245 -21.37632 -20.42009 -19.76549 -19.64488 -18.48902
-18.14973 -17.35090 -17.02181 -16.75549 -16.27180 -15.96109 -15.78927 -15.50691
-15.32276 -15.14674 -14.91580 -14.75099 -14.60800 -14.38458 -14.30256 -14.21678
-14.07634 -13.74476 -13.42631 -13.21591 -13.14644 -12.92399 -12.88418 -12.70726
-12.66626 -12.34834 -12.27113 -12.06457 -11.91187 -11.83809 -11.81893 -11.43996
-11.31003 -11.26103 -11.02354 -10.80005 -10.49390 -9.88950 -9.72503 -9.31519
-8.08291 -5.39450 -0.45636 -0.02238 1.30834 1.33646 1.40623 1.46682
1.82136 2.34960 2.41092 2.66921 3.19123 3.23928 3.47697 3.61512
3.66962 3.72276 3.77528 3.80274 3.93141 3.98350 4.11858 4.20331
4.22526 4.32634 4.47111 4.50937 4.53298 4.54701 4.67271 4.70570
4.73930 4.76494 4.82203 4.89313 4.90476 4.93182 5.03168 5.08551
5.17719 5.19132 5.21136 5.33650 5.36669 5.39170 5.46717 5.50554
5.54136 5.72250 6.17012 6.22644 6.38357 6.74248 6.94106 7.02824
7.80686 7.97000 9.13302
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012769 B = 0.003090 C = 0.002731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2192.268201 B = 9058.930977 C =10249.725678
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.073 4.073
3 C -0.134 4.134
4 C 0.144 3.856
5 N -0.523 5.523
6 C 0.331 3.669
7 O -0.495 6.495
8 C -0.202 4.202
9 C 0.560 3.440
10 O -0.578 6.578
11 N -0.598 5.598
12 C 0.095 3.905
13 C -0.123 4.123
14 C -0.077 4.077
15 H 0.093 0.907
16 C -0.147 4.147
17 C -0.094 4.094
18 H 0.051 0.949
19 C 0.160 3.840
20 N -0.763 5.763
21 C -0.227 4.227
22 H 0.066 0.934
23 C -0.055 4.055
24 N -0.979 5.979
25 Si 0.941 3.059
26 H -0.281 1.281
27 H -0.291 1.291
28 H -0.268 1.268
29 C 0.122 3.878
30 C -0.023 4.023
31 H 0.053 0.947
32 H 0.046 0.954
33 H 0.075 0.925
34 H 0.094 0.906
35 H 0.100 0.900
36 H 0.197 0.803
37 H 0.416 0.584
38 H 0.098 0.902
39 H 0.105 0.895
40 H 0.114 0.886
41 H 0.049 0.951
42 H 0.043 0.957
43 H 0.080 0.920
44 H 0.050 0.950
45 H 0.039 0.961
46 H 0.034 0.966
47 H 0.360 0.640
48 H 0.258 0.742
49 H 0.086 0.914
50 H 0.054 0.946
51 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.754 -29.442 21.719 37.036
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.111 4.111
3 C -0.136 4.136
4 C -0.013 4.013
5 N -0.241 5.241
6 C 0.153 3.847
7 O -0.305 6.305
8 C -0.209 4.209
9 C 0.348 3.652
10 O -0.458 6.458
11 N -0.329 5.329
12 C -0.025 4.025
13 C -0.161 4.161
14 C -0.096 4.096
15 H 0.111 0.889
16 C -0.204 4.204
17 C -0.114 4.114
18 H 0.070 0.930
19 C 0.034 3.966
20 N -0.408 5.408
21 C -0.358 4.358
22 H 0.084 0.916
23 C -0.247 4.247
24 N -0.630 5.630
25 Si 0.770 3.230
26 H -0.208 1.208
27 H -0.217 1.217
28 H -0.193 1.193
29 C 0.000 4.000
30 C -0.049 4.049
31 H 0.073 0.927
32 H 0.065 0.935
33 H 0.094 0.906
34 H 0.113 0.887
35 H 0.118 0.882
36 H 0.214 0.786
37 H 0.278 0.722
38 H 0.116 0.884
39 H 0.123 0.877
40 H 0.132 0.868
41 H 0.068 0.932
42 H 0.062 0.938
43 H 0.099 0.901
44 H 0.069 0.931
45 H 0.057 0.943
46 H 0.052 0.948
47 H 0.193 0.807
48 H 0.067 0.933
49 H 0.104 0.896
50 H 0.072 0.928
51 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges -5.189 -28.591 22.184 36.558
hybrid contribution -0.832 1.913 -0.316 2.109
sum -6.021 -26.678 21.869 35.017
Atomic orbital electron populations
1.21805 0.94421 1.02866 1.01815 1.20579 0.96067 0.88870 1.05593
1.21195 1.00398 0.99695 0.92332 1.23312 0.90369 0.87745 0.99889
1.67338 1.14549 1.11397 1.30860 1.19266 0.91554 0.86773 0.87131
1.84601 1.37074 1.13237 1.95557 1.20867 1.09177 0.98030 0.92796
1.18421 0.77877 0.85526 0.83330 1.90793 1.54011 1.19211 1.81807
1.48129 1.52975 1.19368 1.12473 1.22340 0.94355 0.81960 1.03883
1.21983 0.95371 1.03146 0.95604 1.21082 0.97168 0.93204 0.98102
0.88909 1.21871 0.94812 1.02594 1.01165 1.21643 0.94961 0.98467
0.96351 0.93029 1.20925 0.97832 0.82991 0.94895 1.42895 1.78552
1.10272 1.09090 1.19075 1.33923 0.92979 0.89819 0.91567 1.25308
1.02787 0.97304 0.99343 1.69838 1.55903 1.09204 1.28042 0.85618
0.78304 0.78434 0.80640 1.20766 1.21720 1.19348 1.21548 0.96630
0.97676 0.84159 1.21913 0.91967 0.90097 1.00928 0.92742 0.93493
0.90607 0.88729 0.88168 0.78640 0.72245 0.88372 0.87666 0.86798
0.93244 0.93826 0.90138 0.93054 0.94320 0.94796 0.80727 0.93282
0.89587 0.92774 0.81426
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.66 9.89 71.98 0.71 0.05 16
2 C -0.07 -0.22 6.08 29.85 0.18 -0.03 16
3 C -0.13 -1.32 5.14 -19.81 -0.10 -1.42 16
4 C 0.14 1.87 10.84 84.71 0.92 2.79 16
5 N -0.52 -11.42 10.37 -308.00 -3.19 -14.61 16
6 C 0.33 8.52 7.74 85.13 0.66 9.18 16
7 O -0.49 -14.36 12.51 -75.58 -0.95 -15.30 16
8 C -0.20 -4.69 4.95 -19.91 -0.10 -4.79 16
9 C 0.56 17.07 7.04 86.69 0.61 17.68 16
10 O -0.58 -23.34 15.81 7.60 0.12 -23.22 16
11 N -0.60 -15.29 2.97 -822.69 -2.45 -17.74 16
12 C 0.10 1.42 5.16 86.36 0.45 1.87 16
13 C -0.12 -1.89 5.36 30.67 0.16 -1.73 16
14 C -0.08 -1.54 2.23 -10.77 -0.02 -1.56 16
15 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16
16 C -0.15 -2.94 8.82 71.98 0.63 -2.30 16
17 C -0.09 -2.86 1.92 -10.71 -0.02 -2.89 16
18 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16
19 C 0.16 6.08 5.41 86.38 0.47 6.55 16
20 N -0.76 -37.96 5.18 -343.44 -1.78 -39.74 16
21 C -0.23 -13.47 10.47 84.04 0.88 -12.59 16
22 H 0.07 4.19 8.06 -2.91 -0.02 4.16 16
23 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16
24 N -0.98 -64.80 13.97 21.65 0.30 -64.49 16
25 Si 0.94 50.12 27.73 68.60 1.90 52.02 16
26 H -0.28 -14.71 7.11 99.48 0.71 -14.00 16
27 H -0.29 -15.38 7.11 99.48 0.71 -14.67 16
28 H -0.27 -13.94 6.52 99.48 0.65 -13.29 16
29 C 0.12 3.83 5.52 86.36 0.48 4.31 16
30 C -0.02 -0.32 7.27 22.72 0.17 -0.16 16
31 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16
32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16
33 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16
34 H 0.09 0.05 8.09 -2.38 -0.02 0.03 16
35 H 0.10 -0.03 8.09 -2.39 -0.02 -0.05 16
36 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16
37 H 0.42 9.65 9.06 -74.06 -0.67 8.98 16
38 H 0.10 1.21 4.99 -2.39 -0.01 1.20 16
39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16
40 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16
41 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16
42 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16
43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
44 H 0.05 1.19 6.30 -2.38 -0.02 1.17 16
45 H 0.04 1.48 6.15 -2.38 -0.01 1.47 16
46 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16
47 H 0.36 18.22 4.76 -92.71 -0.44 17.78 16
48 H 0.26 16.32 8.31 -92.71 -0.77 15.54 16
49 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16
50 H 0.05 2.21 6.20 -2.38 -0.01 2.20 16
51 H 0.17 1.48 7.16 -2.91 -0.02 1.46 16
Total: -1.00 -85.73 401.55 0.28 -85.45
By element:
Atomic # 1 Polarization: 25.88 SS G_CDS: -0.22 Total: 25.67 kcal
Atomic # 6 Polarization: 5.44 SS G_CDS: 6.54 Total: 11.98 kcal
Atomic # 7 Polarization: -129.47 SS G_CDS: -7.12 Total: -136.59 kcal
Atomic # 8 Polarization: -37.70 SS G_CDS: -0.83 Total: -38.53 kcal
Atomic # 14 Polarization: 50.12 SS G_CDS: 1.90 Total: 52.02 kcal
Total: -85.73 0.28 -85.45 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001133209552.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.581 kcal
(2) G-P(sol) polarization free energy of solvation -85.728 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.146 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.865 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds