Wall clock time and date at job start Wed Apr 1 2020 04:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.47069 * 2 1 4 4 C 1.38349 * 120.27008 * 90.00006 * 3 2 1 5 5 N 1.31884 * 121.18361 * 179.97438 * 4 3 2 6 6 C 1.32234 * 121.79986 * 359.97438 * 5 4 3 7 7 O 1.35431 * 119.80116 * 179.97438 * 6 5 4 8 8 C 1.40284 * 120.40091 * 0.26074 * 6 5 4 9 9 C 1.47528 * 120.59538 * 179.72467 * 8 6 5 10 10 O 1.21594 * 119.99762 * 306.68506 * 9 8 6 11 11 N 1.34775 * 120.00140 * 126.69667 * 9 8 6 12 12 C 1.46927 * 120.62732 * 3.61840 * 11 9 8 13 13 C 1.52764 * 109.00277 * 233.58235 * 12 11 9 14 14 C 1.53044 * 109.38564 * 305.59111 * 13 12 11 15 15 H 1.08994 * 109.45537 * 181.26437 * 14 13 12 16 16 C 1.53006 * 109.45746 * 301.22059 * 14 13 12 17 17 C 1.53032 * 109.53694 * 61.24047 * 14 13 12 18 18 H 1.08995 * 109.49947 * 58.58843 * 17 14 13 19 19 C 1.53007 * 109.52492 * 178.66830 * 17 14 13 20 20 N 1.46495 * 109.47266 * 184.85272 * 19 17 14 21 21 C 1.36936 * 120.00092 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99565 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00462 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99742 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00195 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47280 * 60.00159 * 25 23 21 27 27 H 1.48500 * 109.47062 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47302 * 299.99756 * 25 23 21 29 29 C 1.46919 * 120.62931 * 183.89668 * 11 9 8 30 30 C 1.38342 * 120.26875 * 269.97662 * 3 2 1 31 31 H 1.09001 * 109.46893 * 300.00170 * 1 2 3 32 32 H 1.08995 * 109.47211 * 59.99801 * 1 2 3 33 33 H 1.08999 * 109.46927 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46893 * 239.99830 * 2 1 3 35 35 H 1.09001 * 109.46871 * 119.99971 * 2 1 3 36 36 H 1.07999 * 119.40820 * 359.97438 * 4 3 2 37 37 H 0.96694 * 114.00264 * 90.00077 * 7 6 5 38 38 H 1.08990 * 109.58771 * 353.41741 * 12 11 9 39 39 H 1.09003 * 109.58470 * 113.84634 * 12 11 9 40 40 H 1.09002 * 109.56165 * 185.55571 * 13 12 11 41 41 H 1.09000 * 109.36164 * 65.50323 * 13 12 11 42 42 H 1.08993 * 109.46894 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.46697 * 300.06959 * 16 14 13 44 44 H 1.08994 * 109.47093 * 60.06529 * 16 14 13 45 45 H 1.09005 * 109.46645 * 304.85730 * 19 17 14 46 46 H 1.09006 * 109.46869 * 64.85300 * 19 17 14 47 47 H 0.97000 * 120.00260 * 0.02562 * 20 19 17 48 48 H 0.96998 * 119.99700 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.58898 * 246.15788 * 29 11 9 50 50 H 1.09002 * 109.58850 * 6.58001 * 29 11 9 51 51 H 1.08000 * 120.82666 * 0.04876 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2649 2.0784 1.1949 5 7 2.7049 3.3214 1.2159 6 6 2.9441 3.9949 0.1033 7 8 3.3949 5.2701 0.1721 8 6 2.7280 3.3984 -1.1479 9 6 2.9876 4.1478 -2.3919 10 8 2.4765 5.2378 -2.5629 11 7 3.7912 3.6243 -3.3388 12 6 4.3523 2.2754 -3.1822 13 6 5.8697 2.3460 -3.3444 14 6 6.2073 3.0168 -4.6780 15 1 7.2894 3.0475 -4.8052 16 6 5.5821 2.2176 -5.8232 17 6 5.6519 4.4427 -4.6886 18 1 6.0781 5.0054 -3.8581 19 6 6.0182 5.1244 -6.0086 20 7 5.5875 6.5241 -5.9714 21 6 5.8111 7.3382 -7.0495 22 1 6.3046 6.9481 -7.9275 23 6 5.4036 8.6646 -7.0141 24 7 4.8027 9.1401 -5.9440 25 14 5.7080 9.7748 -8.4852 26 1 5.0169 9.2189 -9.6763 27 1 5.1828 11.1336 -8.1969 28 1 7.1667 9.8548 -8.7516 29 6 4.1275 4.3938 -4.5442 30 6 2.2653 2.0781 -1.1948 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0827 1.5644 2.1271 37 1 4.3586 5.3460 0.1929 38 1 4.1096 1.8915 -2.1914 39 1 3.9364 1.6160 -3.9439 40 1 6.2857 1.3386 -3.3283 41 1 6.2939 2.9284 -2.5265 42 1 5.8228 2.6949 -6.7730 43 1 5.9777 1.2019 -5.8156 44 1 4.5000 2.1870 -5.6965 45 1 7.0977 5.0799 -6.1530 46 1 5.5200 4.6127 -6.8322 47 1 5.1447 6.8745 -5.1827 48 1 4.5182 10.0671 -5.9191 49 1 3.6929 3.9107 -5.4193 50 1 3.7365 5.4071 -4.4519 51 1 2.0909 1.5861 -2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133209553.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:13 Heat of formation + Delta-G solvation = -31.897220 kcal Electronic energy + Delta-G solvation = -31674.928316 eV Core-core repulsion = 27574.698369 eV Total energy + Delta-G solvation = -4100.229947 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.29562 -39.91983 -38.04055 -37.49036 -35.01927 -34.60955 -33.67082 -32.51785 -31.80557 -29.83434 -29.46363 -27.71239 -26.00218 -25.17636 -24.45744 -24.01229 -23.18001 -22.17367 -21.21626 -19.93900 -19.05413 -18.24179 -17.60764 -17.21023 -16.90301 -16.38474 -15.94714 -15.28190 -15.00062 -14.97968 -14.85669 -14.42131 -14.28839 -14.07312 -13.79968 -13.62161 -13.59224 -13.33045 -13.09244 -12.96175 -12.72780 -12.53015 -12.38221 -12.15539 -11.98861 -11.71854 -11.69082 -11.47155 -11.27490 -11.11618 -10.92665 -10.79169 -10.66310 -10.33217 -10.23414 -10.19871 -10.01344 -9.91899 -9.60189 -9.48046 -9.05863 -8.82222 -8.49092 -6.86685 -5.69050 -2.99164 0.44084 0.75077 2.63232 2.91215 3.21921 3.45085 3.47906 3.51840 3.53825 4.14078 4.26470 4.38567 4.46363 4.58492 4.62133 4.66827 4.79371 4.86558 4.88607 4.94285 5.07854 5.14375 5.21304 5.24945 5.28004 5.40731 5.44827 5.51835 5.53058 5.60054 5.62758 5.66305 5.77224 5.77359 5.81250 5.85743 5.91654 5.98529 6.08464 6.13791 6.29225 6.31845 6.34198 6.55497 6.62150 6.76817 6.88266 7.26676 7.42253 7.57035 7.74162 8.20796 8.48519 9.59324 10.17104 10.51048 11.53079 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.002761 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.589572 B =10140.371727 C =11183.787338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.153 4.153 4 C 0.141 3.859 5 N -0.500 5.500 6 C 0.353 3.647 7 O -0.464 6.464 8 C -0.182 4.182 9 C 0.558 3.442 10 O -0.503 6.503 11 N -0.603 5.603 12 C 0.099 3.901 13 C -0.128 4.128 14 C -0.085 4.085 15 H 0.074 0.926 16 C -0.153 4.153 17 C -0.102 4.102 18 H 0.073 0.927 19 C 0.161 3.839 20 N -0.733 5.733 21 C -0.243 4.243 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.287 1.287 29 C 0.121 3.879 30 C -0.032 4.032 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.163 0.837 37 H 0.403 0.597 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.020 0.980 46 H 0.023 0.977 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.790 -25.628 13.296 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.155 4.155 4 C -0.017 4.017 5 N -0.218 5.218 6 C 0.174 3.826 7 O -0.271 6.271 8 C -0.189 4.189 9 C 0.344 3.656 10 O -0.377 6.377 11 N -0.337 5.337 12 C -0.024 4.024 13 C -0.167 4.167 14 C -0.104 4.104 15 H 0.092 0.908 16 C -0.210 4.210 17 C -0.121 4.121 18 H 0.092 0.908 19 C 0.033 3.967 20 N -0.378 5.378 21 C -0.375 4.375 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C 0.000 4.000 30 C -0.058 4.058 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.180 0.820 37 H 0.262 0.738 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.041 0.959 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.088 0.912 50 H 0.122 0.878 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.449 -24.298 13.795 28.153 hybrid contribution 0.439 0.359 -1.292 1.411 sum -3.011 -23.939 12.503 27.174 Atomic orbital electron populations 1.21791 0.94345 1.02095 1.02551 1.20456 0.96385 0.91089 1.03529 1.20839 1.02380 0.98644 0.93602 1.22591 0.92540 0.88747 0.97803 1.67302 1.14514 1.08669 1.31270 1.19111 0.92939 0.84326 0.86258 1.84819 1.27721 1.19193 1.95374 1.21096 1.07390 0.95383 0.95021 1.17898 0.79804 0.85501 0.82428 1.90917 1.48732 1.20003 1.78077 1.48092 1.47887 1.16677 1.21066 1.21886 0.94514 0.83942 1.02096 1.21868 0.95147 1.01192 0.98451 1.21075 1.00457 0.94692 0.94161 0.90766 1.21987 1.00910 0.99188 0.98909 1.21690 0.94849 0.95213 1.00374 0.90847 1.20673 0.96753 0.86419 0.92857 1.42409 1.71365 1.05322 1.18676 1.19138 1.32237 0.91483 0.94599 0.91323 1.24759 1.01294 0.97247 0.97554 1.69663 1.45049 1.15046 1.27935 0.86288 0.77648 0.80137 0.82199 1.21304 1.21704 1.21347 1.21790 0.95267 0.98170 0.84813 1.21577 0.93519 0.91695 0.99042 0.92361 0.92408 0.91974 0.90517 0.90328 0.82024 0.73780 0.90068 0.90927 0.90809 0.91665 0.91692 0.93133 0.92480 0.96181 0.95946 0.78111 0.93396 0.91181 0.87790 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.90 37.16 0.37 -0.36 16 2 C -0.08 -0.35 6.08 -27.88 -0.17 -0.52 16 3 C -0.15 -1.14 5.14 -104.54 -0.54 -1.68 16 4 C 0.14 1.22 10.84 -17.49 -0.19 1.03 16 5 N -0.50 -6.07 10.37 -12.98 -0.13 -6.20 16 6 C 0.35 4.77 7.76 -16.61 -0.13 4.65 16 7 O -0.46 -6.71 12.75 -21.68 -0.28 -6.99 16 8 C -0.18 -2.33 4.92 -104.69 -0.52 -2.84 16 9 C 0.56 8.89 6.90 -12.47 -0.09 8.81 16 10 O -0.50 -10.70 16.17 1.59 0.03 -10.67 16 11 N -0.60 -8.26 2.98 -174.27 -0.52 -8.78 16 12 C 0.10 0.93 5.03 -3.93 -0.02 0.91 16 13 C -0.13 -1.20 5.61 -26.83 -0.15 -1.35 16 14 C -0.08 -0.98 2.71 -90.58 -0.25 -1.23 16 15 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.15 -1.61 8.11 37.16 0.30 -1.31 16 17 C -0.10 -1.60 2.15 -90.50 -0.19 -1.80 16 18 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.16 3.17 5.19 -4.04 -0.02 3.14 16 20 N -0.73 -18.81 5.38 -59.90 -0.32 -19.13 16 21 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 22 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 25 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.12 1.99 5.04 -3.71 -0.02 1.97 16 30 C -0.03 -0.30 7.22 -38.89 -0.28 -0.58 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 36 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.40 3.95 9.06 45.56 0.41 4.36 16 38 H 0.08 0.65 4.71 -51.93 -0.24 0.41 16 39 H 0.07 0.59 6.70 -51.93 -0.35 0.24 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.60 4.99 -51.93 -0.26 0.34 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 47 H 0.38 10.62 6.89 -40.82 -0.28 10.33 16 48 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 49 H 0.07 1.11 6.69 -51.93 -0.35 0.76 16 50 H 0.10 2.19 6.23 -51.93 -0.32 1.87 16 51 H 0.14 1.05 7.36 -52.49 -0.39 0.66 16 LS Contribution 399.25 15.07 6.02 6.02 Total: -1.00 -36.85 399.25 -8.73 -45.57 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.08 Total: 9.36 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.13 Total: 1.32 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.25 Total: -62.50 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.25 Total: -17.66 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.85 -8.73 -45.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133209553.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.674 kcal (2) G-P(sol) polarization free energy of solvation -36.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds