Wall clock time and date at job start Wed Apr 1 2020 04:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50703 * 109.47069 * 2 1 4 4 C 1.38349 * 120.27008 * 90.00006 * 3 2 1 5 5 N 1.31884 * 121.18361 * 179.97438 * 4 3 2 6 6 C 1.32234 * 121.79986 * 359.97438 * 5 4 3 7 7 O 1.35431 * 119.80116 * 179.97438 * 6 5 4 8 8 C 1.40284 * 120.40091 * 0.26074 * 6 5 4 9 9 C 1.47528 * 120.59538 * 179.72467 * 8 6 5 10 10 O 1.21594 * 119.99762 * 306.68506 * 9 8 6 11 11 N 1.34775 * 120.00140 * 126.69667 * 9 8 6 12 12 C 1.46927 * 120.62732 * 3.61840 * 11 9 8 13 13 C 1.52764 * 109.00277 * 233.58235 * 12 11 9 14 14 C 1.53044 * 109.38564 * 305.59111 * 13 12 11 15 15 H 1.08994 * 109.45537 * 181.26437 * 14 13 12 16 16 C 1.53006 * 109.45746 * 301.22059 * 14 13 12 17 17 C 1.53032 * 109.53694 * 61.24047 * 14 13 12 18 18 H 1.08995 * 109.49947 * 58.58843 * 17 14 13 19 19 C 1.53007 * 109.52492 * 178.66830 * 17 14 13 20 20 N 1.46495 * 109.47266 * 184.85272 * 19 17 14 21 21 C 1.36936 * 120.00092 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99565 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00462 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99742 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00195 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47280 * 60.00159 * 25 23 21 27 27 H 1.48500 * 109.47062 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47302 * 299.99756 * 25 23 21 29 29 C 1.46919 * 120.62931 * 183.89668 * 11 9 8 30 30 C 1.38342 * 120.26875 * 269.97662 * 3 2 1 31 31 H 1.09001 * 109.46893 * 300.00170 * 1 2 3 32 32 H 1.08995 * 109.47211 * 59.99801 * 1 2 3 33 33 H 1.08999 * 109.46927 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46893 * 239.99830 * 2 1 3 35 35 H 1.09001 * 109.46871 * 119.99971 * 2 1 3 36 36 H 1.07999 * 119.40820 * 359.97438 * 4 3 2 37 37 H 0.96694 * 114.00264 * 90.00077 * 7 6 5 38 38 H 1.08990 * 109.58771 * 353.41741 * 12 11 9 39 39 H 1.09003 * 109.58470 * 113.84634 * 12 11 9 40 40 H 1.09002 * 109.56165 * 185.55571 * 13 12 11 41 41 H 1.09000 * 109.36164 * 65.50323 * 13 12 11 42 42 H 1.08993 * 109.46894 * 180.02562 * 16 14 13 43 43 H 1.09004 * 109.46697 * 300.06959 * 16 14 13 44 44 H 1.08994 * 109.47093 * 60.06529 * 16 14 13 45 45 H 1.09005 * 109.46645 * 304.85730 * 19 17 14 46 46 H 1.09006 * 109.46869 * 64.85300 * 19 17 14 47 47 H 0.97000 * 120.00260 * 0.02562 * 20 19 17 48 48 H 0.96998 * 119.99700 * 179.97438 * 24 23 21 49 49 H 1.08998 * 109.58898 * 246.15788 * 29 11 9 50 50 H 1.09002 * 109.58850 * 6.58001 * 29 11 9 51 51 H 1.08000 * 120.82666 * 0.04876 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2649 2.0784 1.1949 5 7 2.7049 3.3214 1.2159 6 6 2.9441 3.9949 0.1033 7 8 3.3949 5.2701 0.1721 8 6 2.7280 3.3984 -1.1479 9 6 2.9876 4.1478 -2.3919 10 8 2.4765 5.2378 -2.5629 11 7 3.7912 3.6243 -3.3388 12 6 4.3523 2.2754 -3.1822 13 6 5.8697 2.3460 -3.3444 14 6 6.2073 3.0168 -4.6780 15 1 7.2894 3.0475 -4.8052 16 6 5.5821 2.2176 -5.8232 17 6 5.6519 4.4427 -4.6886 18 1 6.0781 5.0054 -3.8581 19 6 6.0182 5.1244 -6.0086 20 7 5.5875 6.5241 -5.9714 21 6 5.8111 7.3382 -7.0495 22 1 6.3046 6.9481 -7.9275 23 6 5.4036 8.6646 -7.0141 24 7 4.8027 9.1401 -5.9440 25 14 5.7080 9.7748 -8.4852 26 1 5.0169 9.2189 -9.6763 27 1 5.1828 11.1336 -8.1969 28 1 7.1667 9.8548 -8.7516 29 6 4.1275 4.3938 -4.5442 30 6 2.2653 2.0781 -1.1948 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0827 1.5644 2.1271 37 1 4.3586 5.3460 0.1929 38 1 4.1096 1.8915 -2.1914 39 1 3.9364 1.6160 -3.9439 40 1 6.2857 1.3386 -3.3283 41 1 6.2939 2.9284 -2.5265 42 1 5.8228 2.6949 -6.7730 43 1 5.9777 1.2019 -5.8156 44 1 4.5000 2.1870 -5.6965 45 1 7.0977 5.0799 -6.1530 46 1 5.5200 4.6127 -6.8322 47 1 5.1447 6.8745 -5.1827 48 1 4.5182 10.0671 -5.9191 49 1 3.6929 3.9107 -5.4193 50 1 3.7365 5.4071 -4.4519 51 1 2.0909 1.5861 -2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133209553.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:11 Heat of formation + Delta-G solvation = -60.904247 kcal Electronic energy + Delta-G solvation = -31676.186155 eV Core-core repulsion = 27574.698369 eV Total energy + Delta-G solvation = -4101.487786 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24924 -40.95484 -39.23768 -38.46542 -36.67947 -35.25822 -35.04143 -33.55231 -33.32148 -31.43694 -30.12027 -28.75224 -27.47745 -26.32265 -25.17546 -25.00021 -24.77055 -22.91302 -22.59796 -21.02843 -20.04911 -19.43918 -18.93885 -18.45484 -18.13475 -17.36330 -17.03244 -16.78625 -16.25054 -16.04909 -15.74626 -15.70325 -15.37421 -15.14395 -14.78390 -14.66553 -14.58676 -14.43710 -14.33097 -14.03258 -13.95996 -13.79269 -13.09347 -13.05262 -12.99856 -12.89149 -12.84228 -12.64584 -12.47781 -12.33177 -12.18255 -12.06644 -11.91403 -11.81185 -11.75977 -11.42774 -11.27048 -11.24027 -10.93775 -10.78564 -10.45894 -9.86896 -9.63658 -9.01572 -7.95188 -5.25872 -0.39447 -0.00920 1.43766 1.46113 1.48291 1.54587 1.84452 2.38550 2.54589 2.60670 3.24479 3.37528 3.60612 3.68494 3.70014 3.77500 3.80834 3.84941 4.03981 4.08470 4.19299 4.23522 4.27140 4.37280 4.48530 4.52065 4.55705 4.56171 4.66480 4.70761 4.76007 4.81406 4.83023 4.90402 4.92629 4.97800 5.09484 5.15925 5.19276 5.24851 5.29374 5.35044 5.37907 5.39903 5.45737 5.48041 5.51681 5.60526 6.24890 6.26906 6.43449 6.76276 7.01662 7.30359 8.07473 8.29022 9.28077 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.002761 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.589572 B =10140.371727 C =11183.787338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.072 4.072 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.521 5.521 6 C 0.328 3.672 7 O -0.493 6.493 8 C -0.198 4.198 9 C 0.555 3.445 10 O -0.575 6.575 11 N -0.595 5.595 12 C 0.093 3.907 13 C -0.122 4.122 14 C -0.079 4.079 15 H 0.081 0.919 16 C -0.150 4.150 17 C -0.089 4.089 18 H 0.049 0.951 19 C 0.160 3.840 20 N -0.749 5.749 21 C -0.246 4.246 22 H 0.080 0.920 23 C -0.081 4.081 24 N -0.973 5.973 25 Si 0.977 3.023 26 H -0.275 1.275 27 H -0.298 1.298 28 H -0.274 1.274 29 C 0.130 3.870 30 C -0.027 4.027 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.198 0.802 37 H 0.414 0.586 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.024 0.976 46 H 0.032 0.968 47 H 0.369 0.631 48 H 0.250 0.750 49 H 0.078 0.922 50 H 0.046 0.954 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 -30.721 13.305 33.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.134 4.134 4 C -0.015 4.015 5 N -0.240 5.240 6 C 0.150 3.850 7 O -0.302 6.302 8 C -0.205 4.205 9 C 0.343 3.657 10 O -0.455 6.455 11 N -0.327 5.327 12 C -0.028 4.028 13 C -0.160 4.160 14 C -0.098 4.098 15 H 0.099 0.901 16 C -0.206 4.206 17 C -0.109 4.109 18 H 0.067 0.933 19 C 0.033 3.967 20 N -0.391 5.391 21 C -0.377 4.377 22 H 0.098 0.902 23 C -0.273 4.273 24 N -0.624 5.624 25 Si 0.806 3.194 26 H -0.201 1.201 27 H -0.225 1.225 28 H -0.200 1.200 29 C 0.007 3.993 30 C -0.052 4.052 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.215 0.785 37 H 0.274 0.726 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.042 0.958 46 H 0.050 0.950 47 H 0.201 0.799 48 H 0.058 0.942 49 H 0.096 0.904 50 H 0.065 0.935 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.751 -29.494 13.779 32.670 hybrid contribution 0.236 1.774 -1.235 2.175 sum -2.515 -27.720 12.544 30.530 Atomic orbital electron populations 1.21814 0.94609 1.02885 1.01703 1.20575 0.95869 0.88820 1.05723 1.21192 1.00032 0.99954 0.92266 1.23315 0.90710 0.87587 0.99897 1.67326 1.15628 1.10297 1.30712 1.19271 0.94418 0.84218 0.87114 1.84770 1.28999 1.20908 1.95565 1.20845 1.09966 0.96838 0.92831 1.18466 0.78975 0.84795 0.83429 1.90874 1.51730 1.23267 1.79580 1.48130 1.47022 1.18005 1.19497 1.22291 0.94710 0.81514 1.04302 1.21874 0.94858 1.02934 0.96342 1.21068 1.00650 0.91617 0.96461 0.90093 1.21964 1.00932 1.00524 0.97226 1.21544 0.94285 0.97879 0.97171 0.93279 1.20875 0.96652 0.83754 0.95404 1.42691 1.71327 1.07613 1.17517 1.19633 1.30762 0.91984 0.95347 0.90204 1.25679 1.01966 0.99075 1.00557 1.69871 1.47147 1.14914 1.30432 0.85155 0.78001 0.77451 0.78818 1.20100 1.22480 1.20004 1.21427 0.95584 0.95848 0.86393 1.21854 0.92418 0.90007 1.00948 0.92873 0.93713 0.90404 0.88635 0.87931 0.78524 0.72594 0.87963 0.88221 0.86694 0.92622 0.93351 0.89824 0.92496 0.95774 0.95028 0.79916 0.94170 0.90415 0.93493 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.90 71.98 0.71 -0.21 16 2 C -0.07 -0.29 6.08 29.85 0.18 -0.11 16 3 C -0.13 -1.51 5.14 -19.81 -0.10 -1.61 16 4 C 0.14 2.07 10.84 84.71 0.92 2.99 16 5 N -0.52 -12.38 10.37 -308.00 -3.19 -15.58 16 6 C 0.33 9.24 7.76 85.13 0.66 9.90 16 7 O -0.49 -15.76 12.75 -83.74 -1.07 -16.83 16 8 C -0.20 -5.12 4.92 -19.91 -0.10 -5.21 16 9 C 0.56 18.82 6.90 86.69 0.60 19.41 16 10 O -0.58 -27.04 16.17 -0.48 -0.01 -27.05 16 11 N -0.59 -16.56 2.98 -823.52 -2.45 -19.01 16 12 C 0.09 1.48 5.03 86.22 0.43 1.91 16 13 C -0.12 -1.86 5.61 30.53 0.17 -1.69 16 14 C -0.08 -1.66 2.71 -10.77 -0.03 -1.69 16 15 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 16 C -0.15 -2.66 8.11 71.98 0.58 -2.08 16 17 C -0.09 -2.89 2.15 -10.72 -0.02 -2.91 16 18 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 19 C 0.16 6.43 5.19 86.38 0.45 6.88 16 20 N -0.75 -40.34 5.38 -343.44 -1.85 -42.19 16 21 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 22 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 23 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 24 N -0.97 -64.12 13.06 21.65 0.28 -63.84 16 25 Si 0.98 48.26 29.55 68.60 2.03 50.29 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 28 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 29 C 0.13 4.53 5.04 86.36 0.44 4.97 16 30 C -0.03 -0.42 7.22 22.72 0.16 -0.26 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.10 0.13 8.09 -2.39 -0.02 0.11 16 35 H 0.10 0.03 8.09 -2.39 -0.02 0.01 16 36 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.41 9.50 9.06 -74.06 -0.67 8.83 16 38 H 0.10 1.27 4.71 -2.39 -0.01 1.26 16 39 H 0.10 1.15 6.70 -2.39 -0.02 1.13 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 1.03 6.57 -2.39 -0.02 1.02 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.02 4.99 -2.39 -0.01 1.01 16 45 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.03 1.24 6.73 -2.38 -0.02 1.22 16 47 H 0.37 21.99 6.89 -92.71 -0.64 21.35 16 48 H 0.25 16.01 8.31 -92.71 -0.77 15.24 16 49 H 0.08 2.54 6.69 -2.39 -0.02 2.52 16 50 H 0.05 2.20 6.23 -2.39 -0.01 2.18 16 51 H 0.17 1.81 7.36 -2.91 -0.02 1.79 16 Total: -1.00 -88.67 399.25 -0.24 -88.91 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.34 Total: 32.94 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.36 Total: 12.35 kcal Atomic # 7 Polarization: -133.40 SS G_CDS: -7.21 Total: -140.61 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.08 Total: -43.88 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -88.67 -0.24 -88.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133209553.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.010 kcal (2) G-P(sol) polarization free energy of solvation -88.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds