Wall clock time and date at job start Wed Apr 1 2020 04:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47203 * 2 1 4 4 C 1.38353 * 120.26755 * 269.72198 * 3 2 1 5 5 N 1.31892 * 121.18082 * 179.69669 * 4 3 2 6 6 C 1.32231 * 121.79819 * 0.59142 * 5 4 3 7 7 O 1.35425 * 119.80018 * 179.68162 * 6 5 4 8 8 C 1.40284 * 120.40589 * 359.70216 * 6 5 4 9 9 C 1.47522 * 120.59955 * 180.02562 * 8 6 5 10 10 O 1.21587 * 120.00161 * 324.53913 * 9 8 6 11 11 N 1.34779 * 120.00116 * 144.54714 * 9 8 6 12 12 C 1.46933 * 120.62778 * 4.41938 * 11 9 8 13 13 C 1.52761 * 109.00560 * 233.58652 * 12 11 9 14 14 C 1.53040 * 109.38467 * 305.59002 * 13 12 11 15 15 C 1.53036 * 109.53868 * 61.23602 * 14 13 12 16 16 C 1.46920 * 120.63079 * 184.69788 * 11 9 8 17 17 H 1.08992 * 109.58879 * 246.29392 * 16 11 9 18 18 C 1.52997 * 109.58672 * 6.58291 * 16 11 9 19 19 N 1.46504 * 109.46833 * 178.12672 * 18 16 11 20 20 C 1.46506 * 119.99813 * 83.79204 * 19 18 16 21 21 C 1.36933 * 120.00035 * 263.78668 * 19 18 16 22 22 H 1.07999 * 120.00274 * 2.18792 * 21 19 18 23 23 C 1.38813 * 120.00111 * 182.19004 * 21 19 18 24 24 N 1.31623 * 119.99893 * 6.18691 * 23 21 19 25 25 Si 1.86797 * 120.00310 * 186.19065 * 23 21 19 26 26 H 1.48499 * 109.47030 * 59.99484 * 25 23 21 27 27 H 1.48494 * 109.47294 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46880 * 299.99752 * 25 23 21 29 29 C 1.38339 * 120.26906 * 89.99654 * 3 2 1 30 30 H 1.09002 * 109.47710 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47304 * 60.00247 * 1 2 3 32 32 H 1.09000 * 109.47389 * 300.00010 * 1 2 3 33 33 H 1.09003 * 109.46875 * 120.00074 * 2 1 3 34 34 H 1.09000 * 109.47389 * 239.99989 * 2 1 3 35 35 H 1.07993 * 119.41185 * 359.97438 * 4 3 2 36 36 H 0.96704 * 113.99534 * 270.02380 * 7 6 5 37 37 H 1.09000 * 109.58619 * 353.41823 * 12 11 9 38 38 H 1.08994 * 109.58657 * 113.84384 * 12 11 9 39 39 H 1.08996 * 109.56815 * 185.55437 * 13 12 11 40 40 H 1.08999 * 109.38950 * 65.51166 * 13 12 11 41 41 H 1.09006 * 109.46016 * 301.22075 * 14 13 12 42 42 H 1.09001 * 109.45166 * 181.25808 * 14 13 12 43 43 H 1.09000 * 109.49878 * 178.68522 * 15 14 13 44 44 H 1.09002 * 109.49569 * 58.59719 * 15 14 13 45 45 H 1.08995 * 109.46952 * 298.12623 * 18 16 11 46 46 H 1.08997 * 109.47472 * 58.12868 * 18 16 11 47 47 H 1.08998 * 109.46744 * 356.67090 * 20 19 18 48 48 H 1.09001 * 109.47427 * 116.67544 * 20 19 18 49 49 H 1.09000 * 109.46707 * 236.67235 * 20 19 18 50 50 H 0.96993 * 120.00238 * 180.02562 * 24 23 21 51 51 H 1.07993 * 120.82835 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2702 2.0764 -1.1949 5 7 2.7043 3.3216 -1.2160 6 6 2.9425 3.9954 -0.1034 7 8 3.3937 5.2704 -0.1722 8 6 2.7311 3.3974 1.1479 9 6 2.9949 4.1453 2.3918 10 8 3.9205 4.9320 2.4435 11 7 2.2100 3.9564 3.4710 12 6 1.1488 2.9402 3.4563 13 6 -0.1741 3.5966 3.8469 14 6 -0.0087 4.3138 5.1887 15 6 1.0546 5.4066 5.0573 16 6 2.3952 4.7669 4.6824 17 1 2.7399 4.1315 5.4980 18 6 3.4288 5.8624 4.4135 19 7 3.5786 6.6964 5.6086 20 6 4.4754 6.2754 6.6879 21 6 2.8805 7.8694 5.7169 22 1 2.1928 8.1624 4.9374 23 6 3.0567 8.6819 6.8284 24 7 3.9812 8.3885 7.7182 25 14 1.9818 10.1917 7.0617 26 1 0.5579 9.7779 7.1418 27 1 2.3669 10.8844 8.3174 28 1 2.1656 11.1127 5.9113 29 6 2.2647 2.0783 1.1948 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 2.0932 1.5607 -2.1271 36 1 4.3576 5.3459 -0.1924 37 1 1.0632 2.5158 2.4559 38 1 1.3875 2.1523 4.1705 39 1 -0.9480 2.8342 3.9349 40 1 -0.4598 4.3183 3.0816 41 1 0.3005 3.5959 5.9484 42 1 -0.9580 4.7637 5.4793 43 1 1.1553 5.9323 6.0068 44 1 0.7578 6.1113 4.2805 45 1 4.3870 5.4051 4.1671 46 1 3.0955 6.4796 3.5792 47 1 4.8942 5.2972 6.4515 48 1 5.2825 7.0003 6.7933 49 1 3.9167 6.2153 7.6219 50 1 4.1042 8.9560 8.4951 51 1 2.0903 1.5863 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158679530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:47 Heat of formation + Delta-G solvation = 20.723651 kcal Electronic energy + Delta-G solvation = -32444.334592 eV Core-core repulsion = 28346.386457 eV Total energy + Delta-G solvation = -4097.948135 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.31837 -39.72407 -37.70256 -36.89692 -35.56680 -34.57180 -33.46256 -32.32101 -31.38522 -29.92739 -29.40709 -26.70719 -25.84127 -24.99918 -24.61198 -23.83382 -22.97190 -21.85736 -20.62371 -20.38466 -19.20023 -18.65362 -17.43728 -16.96418 -16.46865 -16.20004 -15.61619 -15.47795 -14.85683 -14.75760 -14.56467 -14.35176 -14.05638 -13.83781 -13.65006 -13.47022 -13.32523 -13.25097 -13.09606 -12.69430 -12.51028 -12.36737 -12.09755 -12.08029 -11.66855 -11.49870 -11.43981 -11.16096 -11.01543 -10.72871 -10.66555 -10.58173 -10.36249 -10.30806 -10.05557 -9.90349 -9.89068 -9.68800 -9.63432 -9.00554 -8.86493 -8.40739 -8.24920 -6.75213 -5.51415 -2.92998 0.45611 0.79025 2.77715 3.05943 3.34714 3.45800 3.50786 3.51688 3.62056 4.17355 4.31479 4.44549 4.47879 4.60646 4.67308 4.79361 4.90405 4.95653 5.00011 5.06687 5.17151 5.32001 5.35818 5.43223 5.46309 5.51843 5.52549 5.54011 5.57664 5.76880 5.78106 5.84311 5.91139 5.96007 6.02539 6.11827 6.15711 6.21706 6.46551 6.51702 6.73866 6.89711 6.97310 7.05776 7.32730 7.38756 7.58942 7.67465 7.75925 7.82986 8.05630 8.36271 8.52484 9.40412 10.05374 10.48522 11.47616 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.003135 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.013887 B = 8930.380578 C = 9662.487101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.157 4.157 4 C 0.143 3.857 5 N -0.504 5.504 6 C 0.360 3.640 7 O -0.467 6.467 8 C -0.189 4.189 9 C 0.562 3.438 10 O -0.510 6.510 11 N -0.595 5.595 12 C 0.078 3.922 13 C -0.133 4.133 14 C -0.122 4.122 15 C -0.118 4.118 16 C 0.123 3.877 17 H 0.063 0.937 18 C 0.164 3.836 19 N -0.611 5.611 20 C 0.170 3.830 21 C -0.234 4.234 22 H 0.071 0.929 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.903 3.097 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.286 1.286 29 C -0.045 4.045 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.410 0.590 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.055 0.945 47 H -0.012 1.012 48 H 0.046 0.954 49 H 0.035 0.965 50 H 0.248 0.752 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 -20.975 -14.425 26.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.159 4.159 4 C -0.015 4.015 5 N -0.222 5.222 6 C 0.181 3.819 7 O -0.276 6.276 8 C -0.195 4.195 9 C 0.349 3.651 10 O -0.386 6.386 11 N -0.328 5.328 12 C -0.045 4.045 13 C -0.172 4.172 14 C -0.159 4.159 15 C -0.156 4.156 16 C 0.019 3.981 17 H 0.081 0.919 18 C 0.036 3.964 19 N -0.335 5.335 20 C 0.026 3.974 21 C -0.364 4.364 22 H 0.089 0.911 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.734 3.266 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.212 1.212 29 C -0.070 4.070 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.179 0.821 36 H 0.271 0.729 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.007 0.993 48 H 0.064 0.936 49 H 0.054 0.946 50 H 0.059 0.941 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.003 -19.771 -14.965 25.766 hybrid contribution -0.529 0.371 1.034 1.219 sum -7.531 -19.399 -13.931 25.043 Atomic orbital electron populations 1.21791 0.94354 1.02115 1.02490 1.20457 0.96334 0.91193 1.03561 1.20857 1.02922 0.98439 0.93687 1.22592 0.92409 0.88775 0.97754 1.67321 1.14753 1.08663 1.31436 1.19117 0.92080 0.84494 0.86227 1.84668 1.28494 1.19076 1.95319 1.21309 1.06979 0.95894 0.95358 1.17815 0.82837 0.82278 0.82219 1.90873 1.29929 1.35446 1.82316 1.48260 1.32746 1.37193 1.14629 1.22466 0.87990 0.91257 1.02778 1.21839 0.96321 1.00155 0.98855 1.21586 0.99773 0.98502 0.96068 1.21859 0.92923 0.96795 1.04006 1.22585 0.98237 0.93177 0.84101 0.91875 1.21393 0.95861 0.90551 0.88577 1.44313 1.50376 1.21329 1.17452 1.20993 0.93752 0.92720 0.89939 1.19286 1.17248 0.96425 1.03419 0.91077 1.24819 0.98973 0.98854 0.97807 1.70204 1.34094 1.39148 1.13476 0.86326 0.80107 0.83091 0.77039 1.21358 1.21766 1.21247 1.22005 0.92899 0.92861 0.99243 0.91991 0.92381 0.92389 0.90543 0.90368 0.82141 0.72930 0.88424 0.91243 0.91305 0.91720 0.92246 0.92115 0.88552 0.92341 0.91699 0.92683 0.99339 0.93598 0.94629 0.94116 0.82614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.89 37.16 0.37 -0.32 16 2 C -0.08 -0.37 6.08 -27.88 -0.17 -0.54 16 3 C -0.16 -1.23 5.14 -104.54 -0.54 -1.77 16 4 C 0.14 1.28 10.84 -17.48 -0.19 1.09 16 5 N -0.50 -6.28 10.37 -12.98 -0.13 -6.42 16 6 C 0.36 5.00 7.74 -16.61 -0.13 4.87 16 7 O -0.47 -6.88 12.22 -35.41 -0.43 -7.31 16 8 C -0.19 -2.49 5.52 -104.69 -0.58 -3.06 16 9 C 0.56 9.14 7.14 -12.47 -0.09 9.05 16 10 O -0.51 -9.95 11.50 -12.15 -0.14 -10.09 16 11 N -0.59 -9.06 2.98 -166.71 -0.50 -9.56 16 12 C 0.08 0.86 5.04 -3.93 -0.02 0.84 16 13 C -0.13 -1.50 6.06 -26.83 -0.16 -1.66 16 14 C -0.12 -1.66 5.89 -26.69 -0.16 -1.81 16 15 C -0.12 -2.12 4.63 -26.61 -0.12 -2.25 16 16 C 0.12 2.28 3.21 -67.60 -0.22 2.06 16 17 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 18 C 0.16 3.69 3.54 -4.04 -0.01 3.68 16 19 N -0.61 -15.91 2.58 -181.12 -0.47 -16.37 16 20 C 0.17 4.43 8.99 59.85 0.54 4.96 16 21 C -0.23 -6.56 8.31 -15.06 -0.13 -6.68 16 22 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 23 C -0.01 -0.26 5.43 -17.43 -0.09 -0.35 16 24 N -0.92 -27.32 9.49 55.49 0.53 -26.79 16 25 Si 0.90 22.54 29.56 -169.99 -5.02 17.52 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 C -0.04 -0.43 7.23 -38.89 -0.28 -0.71 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.41 4.58 9.06 45.56 0.41 4.99 16 37 H 0.10 0.90 3.48 -52.55 -0.18 0.72 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.10 2.05 7.02 -51.93 -0.36 1.69 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.07 1.53 6.20 -51.93 -0.32 1.20 16 46 H 0.05 1.35 7.04 -51.93 -0.37 0.98 16 47 H -0.01 -0.28 7.90 -51.93 -0.41 -0.69 16 48 H 0.05 1.31 6.93 -51.93 -0.36 0.95 16 49 H 0.04 0.97 7.16 -51.93 -0.37 0.60 16 50 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 51 H 0.16 1.20 5.54 -52.49 -0.29 0.91 16 LS Contribution 392.81 15.07 5.92 5.92 Total: -1.00 -33.91 392.81 -9.52 -43.43 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.29 Total: 2.27 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -1.98 Total: 7.41 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.57 Total: -59.14 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.57 Total: -17.40 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.91 -9.52 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158679530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.152 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds