Wall clock time and date at job start Wed Apr 1 2020 04:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47203 * 2 1 4 4 C 1.38353 * 120.26755 * 269.72198 * 3 2 1 5 5 N 1.31892 * 121.18082 * 179.69669 * 4 3 2 6 6 C 1.32231 * 121.79819 * 0.59142 * 5 4 3 7 7 O 1.35425 * 119.80018 * 179.68162 * 6 5 4 8 8 C 1.40284 * 120.40589 * 359.70216 * 6 5 4 9 9 C 1.47522 * 120.59955 * 180.02562 * 8 6 5 10 10 O 1.21587 * 120.00161 * 324.53913 * 9 8 6 11 11 N 1.34779 * 120.00116 * 144.54714 * 9 8 6 12 12 C 1.46933 * 120.62778 * 4.41938 * 11 9 8 13 13 C 1.52761 * 109.00560 * 233.58652 * 12 11 9 14 14 C 1.53040 * 109.38467 * 305.59002 * 13 12 11 15 15 C 1.53036 * 109.53868 * 61.23602 * 14 13 12 16 16 C 1.46920 * 120.63079 * 184.69788 * 11 9 8 17 17 H 1.08992 * 109.58879 * 246.29392 * 16 11 9 18 18 C 1.52997 * 109.58672 * 6.58291 * 16 11 9 19 19 N 1.46504 * 109.46833 * 178.12672 * 18 16 11 20 20 C 1.46506 * 119.99813 * 83.79204 * 19 18 16 21 21 C 1.36933 * 120.00035 * 263.78668 * 19 18 16 22 22 H 1.07999 * 120.00274 * 2.18792 * 21 19 18 23 23 C 1.38813 * 120.00111 * 182.19004 * 21 19 18 24 24 N 1.31623 * 119.99893 * 6.18691 * 23 21 19 25 25 Si 1.86797 * 120.00310 * 186.19065 * 23 21 19 26 26 H 1.48499 * 109.47030 * 59.99484 * 25 23 21 27 27 H 1.48494 * 109.47294 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46880 * 299.99752 * 25 23 21 29 29 C 1.38339 * 120.26906 * 89.99654 * 3 2 1 30 30 H 1.09002 * 109.47710 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47304 * 60.00247 * 1 2 3 32 32 H 1.09000 * 109.47389 * 300.00010 * 1 2 3 33 33 H 1.09003 * 109.46875 * 120.00074 * 2 1 3 34 34 H 1.09000 * 109.47389 * 239.99989 * 2 1 3 35 35 H 1.07993 * 119.41185 * 359.97438 * 4 3 2 36 36 H 0.96704 * 113.99534 * 270.02380 * 7 6 5 37 37 H 1.09000 * 109.58619 * 353.41823 * 12 11 9 38 38 H 1.08994 * 109.58657 * 113.84384 * 12 11 9 39 39 H 1.08996 * 109.56815 * 185.55437 * 13 12 11 40 40 H 1.08999 * 109.38950 * 65.51166 * 13 12 11 41 41 H 1.09006 * 109.46016 * 301.22075 * 14 13 12 42 42 H 1.09001 * 109.45166 * 181.25808 * 14 13 12 43 43 H 1.09000 * 109.49878 * 178.68522 * 15 14 13 44 44 H 1.09002 * 109.49569 * 58.59719 * 15 14 13 45 45 H 1.08995 * 109.46952 * 298.12623 * 18 16 11 46 46 H 1.08997 * 109.47472 * 58.12868 * 18 16 11 47 47 H 1.08998 * 109.46744 * 356.67090 * 20 19 18 48 48 H 1.09001 * 109.47427 * 116.67544 * 20 19 18 49 49 H 1.09000 * 109.46707 * 236.67235 * 20 19 18 50 50 H 0.96993 * 120.00238 * 180.02562 * 24 23 21 51 51 H 1.07993 * 120.82835 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2702 2.0764 -1.1949 5 7 2.7043 3.3216 -1.2160 6 6 2.9425 3.9954 -0.1034 7 8 3.3937 5.2704 -0.1722 8 6 2.7311 3.3974 1.1479 9 6 2.9949 4.1453 2.3918 10 8 3.9205 4.9320 2.4435 11 7 2.2100 3.9564 3.4710 12 6 1.1488 2.9402 3.4563 13 6 -0.1741 3.5966 3.8469 14 6 -0.0087 4.3138 5.1887 15 6 1.0546 5.4066 5.0573 16 6 2.3952 4.7669 4.6824 17 1 2.7399 4.1315 5.4980 18 6 3.4288 5.8624 4.4135 19 7 3.5786 6.6964 5.6086 20 6 4.4754 6.2754 6.6879 21 6 2.8805 7.8694 5.7169 22 1 2.1928 8.1624 4.9374 23 6 3.0567 8.6819 6.8284 24 7 3.9812 8.3885 7.7182 25 14 1.9818 10.1917 7.0617 26 1 0.5579 9.7779 7.1418 27 1 2.3669 10.8844 8.3174 28 1 2.1656 11.1127 5.9113 29 6 2.2647 2.0783 1.1948 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 2.0932 1.5607 -2.1271 36 1 4.3576 5.3459 -0.1924 37 1 1.0632 2.5158 2.4559 38 1 1.3875 2.1523 4.1705 39 1 -0.9480 2.8342 3.9349 40 1 -0.4598 4.3183 3.0816 41 1 0.3005 3.5959 5.9484 42 1 -0.9580 4.7637 5.4793 43 1 1.1553 5.9323 6.0068 44 1 0.7578 6.1113 4.2805 45 1 4.3870 5.4051 4.1671 46 1 3.0955 6.4796 3.5792 47 1 4.8942 5.2972 6.4515 48 1 5.2825 7.0003 6.7933 49 1 3.9167 6.2153 7.6219 50 1 4.1042 8.9560 8.4951 51 1 2.0903 1.5863 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158679530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:46 Heat of formation + Delta-G solvation = -2.908104 kcal Electronic energy + Delta-G solvation = -32445.359342 eV Core-core repulsion = 28346.386457 eV Total energy + Delta-G solvation = -4098.972885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.32908 -40.86005 -38.74209 -38.12525 -37.40484 -35.24276 -34.64040 -33.77717 -32.79491 -31.49930 -30.07085 -28.18488 -27.99849 -26.31192 -25.36358 -24.83790 -24.17604 -23.02848 -22.01421 -21.69324 -20.38475 -19.65130 -18.80775 -18.33396 -17.89347 -17.15888 -16.95809 -16.77010 -16.40027 -15.86556 -15.62800 -15.44956 -15.23285 -14.96050 -14.73322 -14.68374 -14.47495 -14.41064 -14.24248 -13.99476 -13.86243 -13.72202 -13.21308 -13.01127 -12.87555 -12.82126 -12.68505 -12.63118 -12.25274 -12.21191 -12.14716 -11.99105 -11.90242 -11.76260 -11.74740 -11.57892 -11.43988 -10.82771 -10.73865 -10.61457 -10.14691 -9.82062 -9.53821 -8.88251 -7.71704 -5.15618 -0.41870 0.00123 1.43359 1.45666 1.52380 1.63073 1.92468 2.43508 2.52084 2.73564 3.24848 3.36759 3.62291 3.70207 3.76861 3.80095 3.87624 3.94331 4.02327 4.09009 4.18554 4.28949 4.33759 4.43523 4.53124 4.57995 4.59015 4.65585 4.70685 4.77744 4.81280 4.84734 4.95860 4.96984 5.01617 5.12696 5.14459 5.23658 5.27987 5.32681 5.37568 5.42227 5.49070 5.52997 5.55763 5.59514 5.70885 5.83999 6.30530 6.39829 6.48394 6.80324 7.11680 7.20082 7.93024 8.31915 9.25973 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016190 B = 0.003135 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.013887 B = 8930.380578 C = 9662.487101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C -0.136 4.136 4 C 0.143 3.857 5 N -0.525 5.525 6 C 0.335 3.665 7 O -0.492 6.492 8 C -0.204 4.204 9 C 0.555 3.445 10 O -0.557 6.557 11 N -0.595 5.595 12 C 0.072 3.928 13 C -0.128 4.128 14 C -0.116 4.116 15 C -0.110 4.110 16 C 0.137 3.863 17 H 0.066 0.934 18 C 0.176 3.824 19 N -0.625 5.625 20 C 0.190 3.810 21 C -0.239 4.239 22 H 0.066 0.934 23 C -0.062 4.062 24 N -0.947 5.947 25 Si 0.967 3.033 26 H -0.276 1.276 27 H -0.292 1.292 28 H -0.284 1.284 29 C -0.039 4.039 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.196 0.804 36 H 0.416 0.584 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.034 0.966 45 H 0.054 0.946 46 H 0.026 0.974 47 H 0.014 0.986 48 H 0.015 0.985 49 H 0.017 0.983 50 H 0.244 0.756 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 -24.912 -15.575 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.138 4.138 4 C -0.015 4.015 5 N -0.243 5.243 6 C 0.156 3.844 7 O -0.302 6.302 8 C -0.211 4.211 9 C 0.343 3.657 10 O -0.436 6.436 11 N -0.327 5.327 12 C -0.048 4.048 13 C -0.166 4.166 14 C -0.153 4.153 15 C -0.148 4.148 16 C 0.032 3.968 17 H 0.084 0.916 18 C 0.050 3.950 19 N -0.350 5.350 20 C 0.045 3.955 21 C -0.369 4.369 22 H 0.084 0.916 23 C -0.255 4.255 24 N -0.597 5.597 25 Si 0.796 3.204 26 H -0.202 1.202 27 H -0.218 1.218 28 H -0.211 1.211 29 C -0.065 4.065 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.213 0.787 36 H 0.278 0.722 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.129 0.871 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.032 0.968 48 H 0.033 0.967 49 H 0.035 0.965 50 H 0.054 0.946 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.573 -23.765 -16.152 30.286 hybrid contribution 0.264 1.470 1.231 1.936 sum -9.309 -22.294 -14.921 28.396 Atomic orbital electron populations 1.21810 0.93859 1.02976 1.02228 1.20578 0.96508 0.88790 1.05349 1.21220 1.00517 0.99715 0.92378 1.23308 0.90658 0.87628 0.99864 1.67342 1.15764 1.10293 1.30940 1.19281 0.93516 0.84494 0.87100 1.84618 1.29349 1.20708 1.95512 1.21015 1.09520 0.97343 0.93187 1.18365 0.82161 0.81904 0.83231 1.90834 1.31973 1.37621 1.83148 1.48236 1.33786 1.37545 1.13156 1.22870 0.86320 0.90558 1.05101 1.21838 0.97532 1.00672 0.96510 1.21545 0.98171 0.97316 0.98279 1.21685 0.94397 0.97806 1.00961 1.21960 0.96995 0.92287 0.85576 0.91648 1.21233 0.96692 0.90788 0.86273 1.44506 1.50479 1.21775 1.18242 1.20647 0.92485 0.93017 0.89351 1.19453 1.16928 0.97220 1.03273 0.91643 1.25557 1.00401 1.01766 0.97744 1.70399 1.35424 1.40121 1.13743 0.85331 0.78837 0.79642 0.76637 1.20229 1.21781 1.21053 1.22262 0.91907 0.91139 1.01142 0.90629 0.92807 0.92590 0.89046 0.88465 0.78716 0.72232 0.86134 0.88315 0.87060 0.93207 0.90863 0.91373 0.92346 0.94730 0.92811 0.95528 0.96751 0.96673 0.96462 0.94633 0.80150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 71.98 0.71 0.07 16 2 C -0.07 -0.32 6.08 29.85 0.18 -0.14 16 3 C -0.14 -1.59 5.14 -19.81 -0.10 -1.69 16 4 C 0.14 2.13 10.84 84.71 0.92 3.05 16 5 N -0.52 -12.59 10.37 -308.00 -3.19 -15.78 16 6 C 0.33 9.43 7.74 85.13 0.66 10.09 16 7 O -0.49 -15.61 12.22 -70.53 -0.86 -16.47 16 8 C -0.20 -5.24 5.52 -19.91 -0.11 -5.35 16 9 C 0.55 18.40 7.14 86.69 0.62 19.01 16 10 O -0.56 -23.14 11.50 12.68 0.15 -22.99 16 11 N -0.59 -17.72 2.98 -799.61 -2.38 -20.10 16 12 C 0.07 1.33 5.04 86.22 0.43 1.76 16 13 C -0.13 -2.41 6.06 30.53 0.19 -2.22 16 14 C -0.12 -2.91 5.89 30.62 0.18 -2.73 16 15 C -0.11 -4.05 4.63 30.67 0.14 -3.91 16 16 C 0.14 5.15 3.21 44.98 0.14 5.29 16 17 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 18 C 0.18 8.39 3.54 86.38 0.31 8.70 16 19 N -0.62 -34.16 2.58 -726.93 -1.88 -36.04 16 20 C 0.19 10.27 8.99 127.77 1.15 11.42 16 21 C -0.24 -13.96 8.31 84.03 0.70 -13.27 16 22 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 23 C -0.06 -3.66 5.43 84.86 0.46 -3.20 16 24 N -0.95 -58.20 9.49 21.65 0.21 -57.99 16 25 Si 0.97 47.61 29.56 68.60 2.03 49.64 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 28 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 29 C -0.04 -0.63 7.23 22.72 0.16 -0.46 16 30 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.09 0.22 8.09 -2.39 -0.02 0.20 16 34 H 0.10 0.14 8.09 -2.39 -0.02 0.12 16 35 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.42 10.59 9.06 -74.05 -0.67 9.92 16 37 H 0.12 1.71 3.48 -2.97 -0.01 1.70 16 38 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.11 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 2.59 7.02 -2.39 -0.02 2.57 16 44 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.05 2.68 6.20 -2.39 -0.01 2.66 16 46 H 0.03 1.39 7.04 -2.39 -0.02 1.38 16 47 H 0.01 0.67 7.90 -2.39 -0.02 0.65 16 48 H 0.01 0.89 6.93 -2.39 -0.02 0.87 16 49 H 0.02 0.97 7.16 -2.39 -0.02 0.95 16 50 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 51 H 0.18 1.91 5.54 -2.91 -0.02 1.89 16 Total: -1.00 -80.06 392.81 1.08 -78.98 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.27 Total: 14.34 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 6.74 Total: 26.43 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -7.25 Total: -129.92 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.72 Total: -39.47 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -80.06 1.08 -78.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158679530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.068 kcal (2) G-P(sol) polarization free energy of solvation -80.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds