Wall clock time and date at job start Wed Apr 1 2020 04:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47422 * 2 1 4 4 C 1.38023 * 119.51247 * 125.27507 * 3 2 1 5 5 C 1.39930 * 119.13235 * 180.22900 * 4 3 2 6 6 C 1.48159 * 120.89622 * 179.77765 * 5 4 3 7 7 O 1.21517 * 119.99607 * 49.73499 * 6 5 4 8 8 N 1.34770 * 120.00374 * 229.73840 * 6 5 4 9 9 C 1.46926 * 120.63158 * 356.19011 * 8 6 5 10 10 C 1.53194 * 108.78111 * 126.36863 * 9 8 6 11 11 C 1.53044 * 109.30906 * 54.63227 * 10 9 8 12 12 H 1.09003 * 109.45525 * 58.64627 * 11 10 9 13 13 C 1.53001 * 109.45841 * 178.61642 * 11 10 9 14 14 N 1.46508 * 109.47093 * 295.00337 * 13 11 10 15 15 C 1.36929 * 119.99751 * 180.27357 * 14 13 11 16 16 H 1.07999 * 120.00073 * 359.73092 * 15 14 13 17 17 C 1.38810 * 119.99946 * 179.72266 * 15 14 13 18 18 N 1.31621 * 119.99819 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47295 * 90.00310 * 19 17 15 21 21 H 1.48506 * 109.46946 * 210.00006 * 19 17 15 22 22 H 1.48493 * 109.47154 * 329.99886 * 19 17 15 23 23 C 1.53041 * 109.54180 * 298.63954 * 11 10 9 24 24 H 1.08995 * 109.49675 * 181.31315 * 23 11 10 25 25 C 1.53000 * 109.49599 * 301.41350 * 23 11 10 26 26 C 1.46927 * 120.63086 * 176.16671 * 8 6 5 27 27 C 1.39620 * 118.21370 * 359.51071 * 5 4 3 28 28 C 1.38852 * 118.94902 * 0.24686 * 27 5 4 29 29 O 1.35677 * 119.62065 * 180.02562 * 28 27 5 30 30 N 1.31879 * 119.51475 * 305.00566 * 3 2 1 31 31 H 1.09005 * 109.46832 * 300.00126 * 1 2 3 32 32 H 1.09004 * 109.47162 * 59.99878 * 1 2 3 33 33 H 1.09001 * 109.47215 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47344 * 239.99997 * 2 1 3 35 35 H 1.09004 * 109.47162 * 120.00121 * 2 1 3 36 36 H 1.07994 * 120.43536 * 0.02562 * 4 3 2 37 37 H 1.09001 * 109.58584 * 6.57958 * 9 8 6 38 38 H 1.09002 * 109.70431 * 246.22911 * 9 8 6 39 39 H 1.09007 * 109.49499 * 294.68764 * 10 9 8 40 40 H 1.08998 * 109.52572 * 174.60419 * 10 9 8 41 41 H 1.09000 * 109.46972 * 175.00441 * 13 11 10 42 42 H 1.08997 * 109.47228 * 55.00152 * 13 11 10 43 43 H 0.97000 * 119.99997 * 0.02562 * 14 13 11 44 44 H 0.97007 * 119.99772 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.46936 * 59.99766 * 25 23 11 46 46 H 1.08998 * 109.47452 * 179.97438 * 25 23 11 47 47 H 1.08997 * 109.47285 * 300.00204 * 25 23 11 48 48 H 1.08998 * 109.58671 * 353.41794 * 26 8 6 49 49 H 1.09000 * 109.58152 * 113.84609 * 26 8 6 50 50 H 1.07996 * 120.52295 * 180.26842 * 27 5 4 51 51 H 0.96702 * 114.00500 * 89.99906 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9130 1.8305 0.9806 5 6 3.3707 3.1529 0.9758 6 6 4.3127 3.6356 2.0126 7 8 5.3183 3.0009 2.2627 8 7 4.0542 4.7786 2.6783 9 6 2.8868 5.6000 2.3302 10 6 2.0604 5.8444 3.5967 11 6 2.9577 6.4530 4.6769 12 1 3.3850 7.3863 4.3105 13 6 2.1279 6.7304 5.9321 14 7 1.1249 7.7569 5.6374 15 6 0.2648 8.1749 6.6174 16 1 0.3228 7.7448 7.6063 17 6 -0.6816 9.1517 6.3398 18 7 -0.7526 9.6756 5.1344 19 14 -1.8546 9.7225 7.6769 20 1 -1.2525 10.8658 8.4086 21 1 -3.1370 10.1490 7.0613 22 1 -2.1069 8.6065 8.6235 23 6 4.0849 5.4751 5.0168 24 1 4.7098 5.8993 5.8025 25 6 3.4855 4.1523 5.4981 26 6 4.9342 5.2266 3.7662 27 6 2.9203 4.0036 -0.0355 28 6 2.0382 3.5088 -0.9867 29 8 1.5922 4.3234 -1.9758 30 7 1.6283 2.2528 -0.9400 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.2420 1.1406 1.7435 37 1 2.2787 5.0767 1.5924 38 1 3.2179 6.5542 1.9202 39 1 1.6525 4.8984 3.9531 40 1 1.2442 6.5311 3.3723 41 1 2.7824 7.0804 6.7303 42 1 1.6283 5.8143 6.2472 43 1 1.0726 8.1430 4.7491 44 1 -1.4143 10.3579 4.9404 45 1 2.8619 3.7283 4.7111 46 1 4.2886 3.4560 5.7396 47 1 2.8790 4.3300 6.3862 48 1 5.6769 4.4569 3.9760 49 1 5.4343 6.1502 3.4747 50 1 3.2531 5.0302 -0.0773 51 1 2.1450 4.3179 -2.7693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184843596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:06 Heat of formation + Delta-G solvation = -33.171411 kcal Electronic energy + Delta-G solvation = -31317.451922 eV Core-core repulsion = 27217.166722 eV Total energy + Delta-G solvation = -4100.285200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34821 -40.12381 -38.22652 -37.53389 -35.13421 -34.42935 -33.37951 -32.47663 -31.71183 -30.37192 -29.79951 -27.18800 -27.06462 -25.21926 -24.11836 -23.61103 -23.03320 -22.47142 -21.31781 -20.17998 -18.95966 -18.32619 -17.58084 -17.07838 -16.86394 -16.40082 -15.98096 -15.75020 -15.36458 -14.98570 -14.91706 -14.36797 -14.35423 -14.06332 -13.84959 -13.75412 -13.51638 -13.46359 -12.95627 -12.74244 -12.58222 -12.49370 -12.26273 -12.25373 -12.09618 -11.74605 -11.64876 -11.47284 -11.33568 -11.07640 -10.96444 -10.79815 -10.53326 -10.39994 -10.32235 -10.20352 -10.03860 -9.98891 -9.65778 -9.61513 -9.12155 -8.87305 -8.73358 -6.92220 -5.77941 -3.06009 0.48795 0.59616 2.38373 2.73246 3.03592 3.40128 3.42625 3.48008 3.49496 3.99904 4.13655 4.56302 4.57513 4.58880 4.70989 4.78343 4.88271 4.92640 4.94702 4.99462 5.07847 5.12539 5.19062 5.37306 5.38459 5.43061 5.49925 5.57515 5.58684 5.63230 5.66477 5.72578 5.78059 5.79205 5.81874 5.97051 6.01086 6.04783 6.09528 6.13946 6.24756 6.32755 6.39743 6.42857 6.61951 6.77845 6.90840 7.12348 7.16458 7.54712 7.69104 7.85087 8.41386 9.52576 10.10597 10.45083 11.44998 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.002745 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.055681 B =10198.648895 C =11273.231762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C 0.157 3.843 4 C -0.134 4.134 5 C -0.056 4.056 6 C 0.560 3.440 7 O -0.533 6.533 8 N -0.592 5.592 9 C 0.093 3.907 10 C -0.127 4.127 11 C -0.089 4.089 12 H 0.072 0.928 13 C 0.159 3.841 14 N -0.732 5.732 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.099 4.099 24 H 0.084 0.916 25 C -0.146 4.146 26 C 0.117 3.883 27 C -0.165 4.165 28 C 0.317 3.683 29 O -0.476 6.476 30 N -0.488 5.488 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.146 0.854 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.018 0.982 42 H 0.021 0.979 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.063 0.937 48 H 0.092 0.908 49 H 0.071 0.929 50 H 0.149 0.851 51 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.317 -16.927 -12.873 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C 0.019 3.981 4 C -0.155 4.155 5 C -0.067 4.067 6 C 0.347 3.653 7 O -0.411 6.411 8 N -0.324 5.324 9 C -0.029 4.029 10 C -0.165 4.165 11 C -0.108 4.108 12 H 0.091 0.909 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.370 4.370 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.118 4.118 24 H 0.102 0.898 25 C -0.203 4.203 26 C -0.005 4.005 27 C -0.187 4.187 28 C 0.138 3.862 29 O -0.283 6.283 30 N -0.208 5.208 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.164 0.836 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.035 0.965 42 H 0.039 0.961 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.110 0.890 49 H 0.089 0.911 50 H 0.167 0.833 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 9.749 -17.324 -12.836 23.663 hybrid contribution 0.087 1.031 0.664 1.229 sum 9.837 -16.294 -12.172 22.592 Atomic orbital electron populations 1.21695 0.93691 1.01969 1.03009 1.20549 0.97381 0.89604 1.03564 1.20980 0.92263 0.95783 0.89104 1.22005 0.98197 0.95034 1.00259 1.20199 0.96533 0.94371 0.95548 1.18149 0.85245 0.80655 0.81216 1.90789 1.27199 1.56707 1.66359 1.48035 1.27650 1.22144 1.34532 1.22239 0.86576 0.95253 0.98876 1.21971 0.98434 1.02276 0.93806 1.21319 0.95094 0.97537 0.96830 0.90935 1.20707 0.90542 0.92271 0.93363 1.42379 1.37618 1.45051 1.12585 1.19217 1.09317 1.16232 0.92186 0.91303 1.24722 0.99905 0.99639 0.96716 1.69652 1.38033 1.31252 1.19326 0.86205 0.80561 0.78568 0.80958 1.21760 1.21773 1.20800 1.21485 0.97075 0.96757 0.96505 0.89759 1.21870 1.00670 0.96192 1.01562 1.21771 0.92436 1.00443 0.85833 1.22300 0.98285 1.01597 0.96507 1.18914 0.90685 0.86406 0.90174 1.84834 1.54853 1.61258 1.27397 1.66773 1.24491 1.03649 1.25893 0.92608 0.91465 0.92091 0.89616 0.89824 0.83648 0.89363 0.90602 0.91356 0.89231 0.96464 0.96101 0.78310 0.93537 0.92727 0.93262 0.91781 0.88971 0.91088 0.83298 0.74076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.77 37.16 0.36 -0.77 16 2 C -0.07 -0.54 6.33 -27.88 -0.18 -0.72 16 3 C 0.16 1.58 6.18 -82.65 -0.51 1.07 16 4 C -0.13 -1.40 9.44 -39.03 -0.37 -1.77 16 5 C -0.06 -0.63 5.04 -104.67 -0.53 -1.16 16 6 C 0.56 7.22 7.30 -12.19 -0.09 7.13 16 7 O -0.53 -8.28 16.48 5.35 0.09 -8.19 16 8 N -0.59 -7.06 2.41 -173.76 -0.42 -7.48 16 9 C 0.09 1.08 5.42 -3.71 -0.02 1.06 16 10 C -0.13 -1.83 4.91 -26.61 -0.13 -1.96 16 11 C -0.09 -1.33 1.96 -90.58 -0.18 -1.50 16 12 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 13 C 0.16 3.05 5.18 -4.04 -0.02 3.03 16 14 N -0.73 -17.97 5.32 -59.91 -0.32 -18.29 16 15 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.10 -1.22 2.72 -90.50 -0.25 -1.47 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 C -0.15 -1.83 8.38 37.16 0.31 -1.52 16 26 C 0.12 1.35 5.82 -3.71 -0.02 1.33 16 27 C -0.17 -1.69 7.41 -38.84 -0.29 -1.98 16 28 C 0.32 3.40 7.74 -17.17 -0.13 3.27 16 29 O -0.48 -4.43 13.56 -18.73 -0.25 -4.68 16 30 N -0.49 -5.55 9.87 -9.60 -0.09 -5.64 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.60 7.94 -51.93 -0.41 0.19 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 36 H 0.15 1.34 7.94 -52.49 -0.42 0.92 16 37 H 0.09 1.00 4.51 -51.93 -0.23 0.76 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 40 H 0.09 1.50 7.15 -51.93 -0.37 1.13 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 43 H 0.38 9.78 6.85 -40.82 -0.28 9.50 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.85 6.58 -51.93 -0.34 0.51 16 48 H 0.09 1.11 7.03 -51.93 -0.36 0.74 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.15 1.31 7.07 -52.49 -0.37 0.94 16 51 H 0.40 1.62 9.06 45.56 0.41 2.04 16 LS Contribution 401.12 15.07 6.04 6.04 Total: -1.00 -33.88 401.12 -8.66 -42.55 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.13 Total: 8.72 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.28 Total: -3.18 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.11 Total: -58.55 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.17 Total: -12.88 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.88 -8.66 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184843596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.375 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds