Wall clock time and date at job start Wed Apr 1 2020 04:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47422 * 2 1 4 4 C 1.38023 * 119.51247 * 125.27507 * 3 2 1 5 5 C 1.39930 * 119.13235 * 180.22900 * 4 3 2 6 6 C 1.48159 * 120.89622 * 179.77765 * 5 4 3 7 7 O 1.21517 * 119.99607 * 49.73499 * 6 5 4 8 8 N 1.34770 * 120.00374 * 229.73840 * 6 5 4 9 9 C 1.46926 * 120.63158 * 356.19011 * 8 6 5 10 10 C 1.53194 * 108.78111 * 126.36863 * 9 8 6 11 11 C 1.53044 * 109.30906 * 54.63227 * 10 9 8 12 12 H 1.09003 * 109.45525 * 58.64627 * 11 10 9 13 13 C 1.53001 * 109.45841 * 178.61642 * 11 10 9 14 14 N 1.46508 * 109.47093 * 295.00337 * 13 11 10 15 15 C 1.36929 * 119.99751 * 180.27357 * 14 13 11 16 16 H 1.07999 * 120.00073 * 359.73092 * 15 14 13 17 17 C 1.38810 * 119.99946 * 179.72266 * 15 14 13 18 18 N 1.31621 * 119.99819 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47295 * 90.00310 * 19 17 15 21 21 H 1.48506 * 109.46946 * 210.00006 * 19 17 15 22 22 H 1.48493 * 109.47154 * 329.99886 * 19 17 15 23 23 C 1.53041 * 109.54180 * 298.63954 * 11 10 9 24 24 H 1.08995 * 109.49675 * 181.31315 * 23 11 10 25 25 C 1.53000 * 109.49599 * 301.41350 * 23 11 10 26 26 C 1.46927 * 120.63086 * 176.16671 * 8 6 5 27 27 C 1.39620 * 118.21370 * 359.51071 * 5 4 3 28 28 C 1.38852 * 118.94902 * 0.24686 * 27 5 4 29 29 O 1.35677 * 119.62065 * 180.02562 * 28 27 5 30 30 N 1.31879 * 119.51475 * 305.00566 * 3 2 1 31 31 H 1.09005 * 109.46832 * 300.00126 * 1 2 3 32 32 H 1.09004 * 109.47162 * 59.99878 * 1 2 3 33 33 H 1.09001 * 109.47215 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47344 * 239.99997 * 2 1 3 35 35 H 1.09004 * 109.47162 * 120.00121 * 2 1 3 36 36 H 1.07994 * 120.43536 * 0.02562 * 4 3 2 37 37 H 1.09001 * 109.58584 * 6.57958 * 9 8 6 38 38 H 1.09002 * 109.70431 * 246.22911 * 9 8 6 39 39 H 1.09007 * 109.49499 * 294.68764 * 10 9 8 40 40 H 1.08998 * 109.52572 * 174.60419 * 10 9 8 41 41 H 1.09000 * 109.46972 * 175.00441 * 13 11 10 42 42 H 1.08997 * 109.47228 * 55.00152 * 13 11 10 43 43 H 0.97000 * 119.99997 * 0.02562 * 14 13 11 44 44 H 0.97007 * 119.99772 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.46936 * 59.99766 * 25 23 11 46 46 H 1.08998 * 109.47452 * 179.97438 * 25 23 11 47 47 H 1.08997 * 109.47285 * 300.00204 * 25 23 11 48 48 H 1.08998 * 109.58671 * 353.41794 * 26 8 6 49 49 H 1.09000 * 109.58152 * 113.84609 * 26 8 6 50 50 H 1.07996 * 120.52295 * 180.26842 * 27 5 4 51 51 H 0.96702 * 114.00500 * 89.99906 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9130 1.8305 0.9806 5 6 3.3707 3.1529 0.9758 6 6 4.3127 3.6356 2.0126 7 8 5.3183 3.0009 2.2627 8 7 4.0542 4.7786 2.6783 9 6 2.8868 5.6000 2.3302 10 6 2.0604 5.8444 3.5967 11 6 2.9577 6.4530 4.6769 12 1 3.3850 7.3863 4.3105 13 6 2.1279 6.7304 5.9321 14 7 1.1249 7.7569 5.6374 15 6 0.2648 8.1749 6.6174 16 1 0.3228 7.7448 7.6063 17 6 -0.6816 9.1517 6.3398 18 7 -0.7526 9.6756 5.1344 19 14 -1.8546 9.7225 7.6769 20 1 -1.2525 10.8658 8.4086 21 1 -3.1370 10.1490 7.0613 22 1 -2.1069 8.6065 8.6235 23 6 4.0849 5.4751 5.0168 24 1 4.7098 5.8993 5.8025 25 6 3.4855 4.1523 5.4981 26 6 4.9342 5.2266 3.7662 27 6 2.9203 4.0036 -0.0355 28 6 2.0382 3.5088 -0.9867 29 8 1.5922 4.3234 -1.9758 30 7 1.6283 2.2528 -0.9400 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.2420 1.1406 1.7435 37 1 2.2787 5.0767 1.5924 38 1 3.2179 6.5542 1.9202 39 1 1.6525 4.8984 3.9531 40 1 1.2442 6.5311 3.3723 41 1 2.7824 7.0804 6.7303 42 1 1.6283 5.8143 6.2472 43 1 1.0726 8.1430 4.7491 44 1 -1.4143 10.3579 4.9404 45 1 2.8619 3.7283 4.7111 46 1 4.2886 3.4560 5.7396 47 1 2.8790 4.3300 6.3862 48 1 5.6769 4.4569 3.9760 49 1 5.4343 6.1502 3.4747 50 1 3.2531 5.0302 -0.0773 51 1 2.1450 4.3179 -2.7693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184843596.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:05 Heat of formation + Delta-G solvation = -57.110767 kcal Electronic energy + Delta-G solvation = -31318.490011 eV Core-core repulsion = 27217.166722 eV Total energy + Delta-G solvation = -4101.323289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.22617 -41.06424 -39.34172 -38.28037 -36.62649 -35.44248 -34.56092 -33.50051 -32.92231 -32.01195 -30.53167 -28.55854 -28.16926 -26.20940 -25.39275 -24.75422 -24.23066 -23.35741 -22.61549 -21.11445 -19.89835 -19.51607 -18.91777 -18.35665 -17.77880 -17.27390 -16.93695 -16.77738 -16.58309 -16.23857 -15.83542 -15.62040 -15.46441 -15.31307 -15.01192 -14.89683 -14.68867 -14.43936 -14.25400 -13.96071 -13.72555 -13.57147 -13.38664 -13.00789 -12.97869 -12.82606 -12.79585 -12.71509 -12.51008 -12.36287 -12.19448 -12.07490 -11.95090 -11.91449 -11.61257 -11.57413 -11.31372 -11.24391 -10.94867 -10.86311 -10.46634 -9.88539 -9.75922 -8.96383 -7.94472 -5.21928 -0.34419 -0.16261 1.41140 1.47343 1.48267 1.56674 1.78726 2.32431 2.56302 2.63017 3.09646 3.39191 3.43225 3.67978 3.70822 3.79302 3.80897 3.84336 3.99641 4.10436 4.19402 4.24205 4.30190 4.35778 4.38669 4.41100 4.44934 4.63670 4.64051 4.69133 4.72532 4.77085 4.78594 4.83409 4.89047 4.95721 5.05180 5.05381 5.15515 5.15909 5.17605 5.22752 5.27936 5.30905 5.45077 5.46070 5.51550 5.58295 6.17054 6.28568 6.54710 6.81563 6.86123 7.35298 8.12269 8.35673 9.28845 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010746 B = 0.002745 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.055681 B =10198.648895 C =11273.231762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C 0.153 3.847 4 C -0.140 4.140 5 C -0.068 4.068 6 C 0.564 3.436 7 O -0.561 6.561 8 N -0.588 5.588 9 C 0.103 3.897 10 C -0.121 4.121 11 C -0.078 4.078 12 H 0.071 0.929 13 C 0.159 3.841 14 N -0.742 5.742 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.073 4.073 18 N -0.967 5.967 19 Si 0.969 3.031 20 H -0.287 1.287 21 H -0.295 1.295 22 H -0.272 1.272 23 C -0.090 4.090 24 H 0.097 0.903 25 C -0.142 4.142 26 C 0.119 3.881 27 C -0.164 4.164 28 C 0.312 3.688 29 O -0.486 6.486 30 N -0.506 5.506 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.156 0.844 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.017 0.983 42 H 0.018 0.982 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.162 0.838 51 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.074 -17.818 -12.857 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C 0.015 3.985 4 C -0.160 4.160 5 C -0.079 4.079 6 C 0.352 3.648 7 O -0.441 6.441 8 N -0.319 5.319 9 C -0.019 4.019 10 C -0.159 4.159 11 C -0.097 4.097 12 H 0.090 0.910 13 C 0.032 3.968 14 N -0.386 5.386 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.798 3.202 20 H -0.214 1.214 21 H -0.222 1.222 22 H -0.197 1.197 23 C -0.110 4.110 24 H 0.115 0.885 25 C -0.199 4.199 26 C -0.003 4.003 27 C -0.186 4.186 28 C 0.134 3.866 29 O -0.297 6.297 30 N -0.227 5.227 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.173 0.827 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.208 0.792 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.106 0.894 50 H 0.180 0.820 51 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 10.533 -18.233 -12.815 24.649 hybrid contribution -0.138 1.261 0.649 1.425 sum 10.396 -16.972 -12.166 23.326 Atomic orbital electron populations 1.21665 0.94013 1.02780 1.01620 1.20668 0.96978 0.88282 1.05088 1.21392 0.91822 0.96738 0.88505 1.22178 0.98255 0.94942 1.00638 1.20185 0.96928 0.95069 0.95707 1.18304 0.84964 0.80310 0.81212 1.90772 1.28428 1.57454 1.67433 1.48041 1.27471 1.21929 1.34458 1.22158 0.86290 0.96053 0.97444 1.21839 0.98012 1.01025 0.95011 1.21196 0.95269 0.98350 0.94887 0.91030 1.20845 0.89846 0.90547 0.95528 1.42568 1.38309 1.45960 1.11715 1.19594 1.09442 1.15716 0.92842 0.91053 1.25496 1.01897 1.00365 0.98801 1.69797 1.38858 1.31990 1.21113 0.85203 0.78178 0.78209 0.78564 1.21434 1.22201 1.19661 1.21429 0.96235 0.95841 0.97473 0.88483 1.21823 1.00784 0.96510 1.00788 1.21805 0.92105 1.01214 0.85156 1.22371 0.98108 1.02046 0.96027 1.19057 0.90555 0.86429 0.90600 1.84783 1.55679 1.60963 1.28236 1.66841 1.25063 1.04172 1.26600 0.93748 0.93033 0.90193 0.88439 0.87900 0.82682 0.88729 0.89078 0.92110 0.91893 0.96483 0.96391 0.79205 0.94035 0.93592 0.92030 0.92749 0.88932 0.89445 0.82011 0.71622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.77 71.98 0.70 -1.36 16 2 C -0.07 -0.96 6.33 29.85 0.19 -0.77 16 3 C 0.15 2.93 6.18 42.50 0.26 3.19 16 4 C -0.14 -2.77 9.44 22.63 0.21 -2.56 16 5 C -0.07 -1.47 5.04 -19.90 -0.10 -1.57 16 6 C 0.56 13.81 7.30 86.88 0.63 14.44 16 7 O -0.56 -16.78 16.48 -3.77 -0.06 -16.84 16 8 N -0.59 -13.10 2.41 -821.95 -1.98 -15.08 16 9 C 0.10 2.27 5.42 86.36 0.47 2.74 16 10 C -0.12 -3.44 4.91 30.67 0.15 -3.29 16 11 C -0.08 -2.27 1.96 -10.76 -0.02 -2.29 16 12 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 13 C 0.16 6.07 5.18 86.38 0.45 6.51 16 14 N -0.74 -36.74 5.32 -343.45 -1.83 -38.57 16 15 C -0.24 -13.53 9.99 84.03 0.84 -12.69 16 16 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 17 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 18 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 19 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 C -0.09 -2.08 2.72 -10.71 -0.03 -2.11 16 24 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 25 C -0.14 -3.38 8.38 71.98 0.60 -2.78 16 26 C 0.12 2.50 5.82 86.36 0.50 3.00 16 27 C -0.16 -3.17 7.41 22.75 0.17 -3.00 16 28 C 0.31 6.42 7.74 84.78 0.66 7.07 16 29 O -0.49 -8.51 13.56 -89.95 -1.22 -9.73 16 30 N -0.51 -11.11 9.87 -297.17 -2.93 -14.05 16 31 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.05 0.90 7.94 -2.38 -0.02 0.88 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.10 0.96 7.86 -2.38 -0.02 0.94 16 36 H 0.16 2.67 7.94 -2.91 -0.02 2.65 16 37 H 0.09 2.03 4.51 -2.39 -0.01 2.02 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.81 6.34 -2.38 -0.02 1.79 16 40 H 0.06 2.15 7.15 -2.39 -0.02 2.14 16 41 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.02 0.71 6.74 -2.39 -0.02 0.70 16 43 H 0.38 19.53 6.85 -92.71 -0.63 18.89 16 44 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 45 H 0.05 1.17 5.97 -2.39 -0.01 1.16 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.05 1.39 6.58 -2.39 -0.02 1.37 16 48 H 0.09 2.03 7.03 -2.39 -0.02 2.01 16 49 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.16 2.59 7.07 -2.91 -0.02 2.57 16 51 H 0.42 2.88 9.06 -74.06 -0.67 2.20 16 Total: -1.00 -72.18 401.12 0.10 -72.08 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.34 Total: 31.47 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 6.16 Total: 0.84 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -6.46 Total: -125.83 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.28 Total: -26.57 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -72.18 0.10 -72.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184843596.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.969 kcal (2) G-P(sol) polarization free energy of solvation -72.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds