Wall clock time and date at job start Wed Apr 1 2020 04:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 109.47198 * 2 1 4 4 C 1.38678 * 120.42327 * 89.99899 * 3 2 1 5 5 C 1.38627 * 118.42245 * 179.97438 * 4 3 2 6 6 C 1.38219 * 119.16087 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.61845 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47428 * 124.99552 * 7 6 5 9 9 O 1.21282 * 119.99699 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00247 * 180.02562 * 8 7 6 11 11 C 1.47506 * 118.75552 * 0.02562 * 10 8 7 12 12 C 1.53572 * 111.02545 * 221.62605 * 11 10 8 13 13 C 1.51534 * 109.58380 * 39.97857 * 12 11 10 14 14 O 1.42151 * 108.76755 * 268.60047 * 13 12 11 15 15 C 1.38014 * 119.43763 * 87.21796 * 14 13 12 16 16 H 1.08996 * 109.46778 * 56.57627 * 15 14 13 17 17 C 1.52999 * 109.47405 * 176.57761 * 15 14 13 18 18 N 1.46506 * 109.46684 * 300.00216 * 17 15 14 19 19 C 1.36938 * 119.99589 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00325 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99817 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99673 * 359.71804 * 21 19 18 23 23 Si 1.86795 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47274 * 89.99913 * 23 21 19 25 25 H 1.48505 * 109.47015 * 209.99478 * 23 21 19 26 26 H 1.48498 * 109.47362 * 329.99904 * 23 21 19 27 27 C 1.45121 * 118.75546 * 180.02562 * 10 8 7 28 28 N 1.31859 * 120.76558 * 0.25471 * 6 5 4 29 29 C 1.31880 * 121.72127 * 359.47556 * 28 6 5 30 30 H 1.09002 * 109.47511 * 299.99695 * 1 2 3 31 31 H 1.08997 * 109.47543 * 60.00003 * 1 2 3 32 32 H 1.09005 * 109.47217 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47553 * 239.99523 * 2 1 3 34 34 H 1.09005 * 109.47002 * 119.99650 * 2 1 3 35 35 H 1.07997 * 120.78357 * 0.02562 * 4 3 2 36 36 H 1.07999 * 120.41667 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.47207 * 5.00128 * 7 6 5 38 38 H 1.08998 * 109.47568 * 245.00177 * 7 6 5 39 39 H 1.08996 * 109.16852 * 101.23243 * 11 10 8 40 40 H 1.08995 * 109.16878 * 342.02129 * 11 10 8 41 41 H 1.09007 * 109.45232 * 279.94697 * 12 11 10 42 42 H 1.09001 * 109.45668 * 160.01563 * 12 11 10 43 43 H 1.09001 * 109.59262 * 148.81548 * 13 12 11 44 44 H 1.09001 * 109.58815 * 28.38608 * 13 12 11 45 45 H 1.09000 * 109.47486 * 180.02562 * 17 15 14 46 46 H 1.09001 * 109.47362 * 59.99428 * 17 15 14 47 47 H 0.96999 * 120.00080 * 359.97438 * 18 17 15 48 48 H 0.97000 * 120.00043 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.46502 * 330.68445 * 27 10 8 50 50 H 1.09000 * 109.45631 * 210.73237 * 27 10 8 51 51 H 1.08011 * 119.61446 * 180.26860 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2663 2.0828 1.1958 5 6 2.7287 3.3888 1.1474 6 6 2.9400 3.9833 -0.0824 7 6 3.4419 5.4028 -0.1470 8 6 4.6956 5.4549 -0.9816 9 8 5.1378 4.4394 -1.4757 10 7 5.3255 6.6299 -1.1789 11 6 4.7642 7.8479 -0.5647 12 6 4.8239 9.0338 -1.5386 13 6 4.4754 8.5618 -2.9357 14 8 5.6732 8.1905 -3.6051 15 6 6.1563 6.9049 -3.4680 16 1 5.3900 6.1940 -3.7771 17 6 7.3977 6.7302 -4.3451 18 7 7.0436 6.9722 -5.7460 19 6 7.9999 6.8719 -6.7210 20 1 9.0152 6.6148 -6.4572 21 6 7.6647 7.1016 -8.0483 22 7 6.4264 7.4104 -8.3702 23 14 8.9693 6.9655 -9.3782 24 1 9.0119 5.5718 -9.8891 25 1 8.6393 7.8910 -10.4918 26 1 10.2937 7.3256 -8.8112 27 6 6.5304 6.6490 -1.9877 28 7 2.7024 3.3247 -1.1997 29 6 2.2671 2.0798 -1.1916 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.0933 1.5923 2.1423 36 1 2.9213 3.9348 2.0591 37 1 3.6612 5.7569 0.8603 38 1 2.6790 6.0379 -0.5973 39 1 5.3343 8.0920 0.3317 40 1 3.7261 7.6636 -0.2885 41 1 5.8297 9.4540 -1.5377 42 1 4.1118 9.7972 -1.2252 43 1 3.9861 9.3679 -3.4825 44 1 3.8089 7.7015 -2.8751 45 1 7.7789 5.7148 -4.2372 46 1 8.1639 7.4412 -4.0361 47 1 6.1317 7.2026 -5.9830 48 1 6.1919 7.5706 -9.2978 49 1 7.0402 5.6894 -1.9025 50 1 7.1902 7.4428 -1.6374 51 1 2.0876 1.5710 -2.1273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201453802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:23 Heat of formation + Delta-G solvation = -29.063182 kcal Electronic energy + Delta-G solvation = -30776.148617 eV Core-core repulsion = 26676.041563 eV Total energy + Delta-G solvation = -4100.107054 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.88889 -40.13862 -38.33333 -35.58700 -35.24061 -34.48721 -32.85695 -32.52234 -31.68989 -30.82682 -29.16148 -27.78319 -26.51358 -25.03694 -24.06280 -23.66693 -22.51857 -21.66237 -21.32441 -20.83461 -19.07490 -17.54167 -17.08091 -16.92097 -16.72087 -16.35341 -16.01303 -15.78157 -15.51936 -14.80547 -14.63503 -14.43292 -14.20707 -14.14475 -13.81943 -13.70373 -13.39309 -13.21802 -13.08666 -12.96017 -12.77275 -12.56214 -12.44085 -12.31854 -12.09512 -11.85663 -11.65815 -11.55513 -11.33523 -11.28016 -10.90261 -10.75281 -10.70860 -10.19006 -9.98608 -9.94399 -9.76995 -9.59977 -9.44768 -9.30795 -8.97215 -8.76084 -8.46468 -6.76984 -5.62616 -2.90363 0.87205 1.13135 2.63806 2.90352 3.52441 3.56637 3.58856 3.60992 4.00232 4.04301 4.32625 4.42829 4.49911 4.61415 4.63645 4.69719 4.73448 4.76649 4.91478 4.97112 4.98571 5.02710 5.12262 5.18124 5.32772 5.33914 5.39912 5.42604 5.50164 5.52448 5.54661 5.58226 5.65563 5.68688 5.70914 5.82087 5.86783 5.91722 6.04496 6.06059 6.08183 6.18196 6.42198 6.49959 6.59376 6.74949 6.87461 7.28138 7.80805 7.91462 8.09941 8.21350 8.55869 9.67165 10.26572 10.62869 11.60441 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.002440 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.123347 B =11472.327784 C =13211.937426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.139 4.139 4 C -0.076 4.076 5 C -0.165 4.165 6 C 0.137 3.863 7 C -0.091 4.091 8 C 0.512 3.488 9 O -0.512 6.512 10 N -0.613 5.613 11 C 0.105 3.895 12 C -0.167 4.167 13 C 0.073 3.927 14 O -0.368 6.368 15 C 0.089 3.911 16 H 0.052 0.948 17 C 0.166 3.834 18 N -0.725 5.725 19 C -0.235 4.235 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.084 3.916 28 N -0.450 5.450 29 C 0.109 3.891 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.034 0.966 46 H 0.026 0.974 47 H 0.388 0.612 48 H 0.253 0.747 49 H 0.092 0.908 50 H 0.081 0.919 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.228 -6.049 27.014 30.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.141 4.141 4 C -0.102 4.102 5 C -0.185 4.185 6 C -0.001 4.001 7 C -0.131 4.131 8 C 0.299 3.701 9 O -0.386 6.386 10 N -0.348 5.348 11 C -0.017 4.017 12 C -0.205 4.205 13 C -0.004 4.004 14 O -0.285 6.285 15 C 0.029 3.971 16 H 0.070 0.930 17 C 0.038 3.962 18 N -0.369 5.369 19 C -0.366 4.366 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.040 4.040 28 N -0.158 5.158 29 C -0.048 4.048 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.043 0.957 47 H 0.221 0.779 48 H 0.063 0.937 49 H 0.110 0.890 50 H 0.100 0.900 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.574 -6.058 25.763 29.301 hybrid contribution 0.066 -0.450 0.266 0.527 sum -12.508 -6.508 26.029 29.603 Atomic orbital electron populations 1.21757 0.94538 1.01895 1.02249 1.20468 0.96206 0.91878 1.03272 1.20936 1.01024 0.97779 0.94334 1.21379 0.96580 0.94146 0.98082 1.21867 1.02034 0.96102 0.98481 1.20539 0.95703 0.95102 0.88789 1.20663 0.96809 0.93876 1.01785 1.20319 0.85136 0.83386 0.81288 1.90766 1.65506 1.33505 1.48790 1.47926 1.27501 1.07370 1.51954 1.21993 0.98992 0.84909 0.95824 1.22515 1.04136 0.97434 0.96445 1.22104 0.87357 0.99423 0.91468 1.86432 1.40558 1.30281 1.71272 1.22263 0.97517 0.84387 0.92952 0.92982 1.20611 0.92177 0.97822 0.85572 1.42213 1.10791 1.84158 0.99763 1.19240 0.91116 1.39224 0.87063 0.91229 1.24736 0.96445 1.02847 0.97162 1.69685 1.16735 1.54585 1.17148 0.86182 0.80797 0.77281 0.81903 1.21823 1.21857 1.20820 1.22382 0.86272 1.03758 0.91587 1.67471 1.09001 1.08671 1.30624 1.22672 0.94326 0.90335 0.97513 0.92693 0.92368 0.92184 0.90519 0.90913 0.85029 0.84948 0.87567 0.87141 0.91479 0.90082 0.89942 0.89748 0.89348 0.93480 0.94875 0.95671 0.77854 0.93665 0.89016 0.90023 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.15 0.37 -0.49 16 2 C -0.08 -0.53 6.09 -27.89 -0.17 -0.70 16 3 C -0.14 -1.29 5.15 -104.48 -0.54 -1.83 16 4 C -0.08 -0.64 9.86 -39.28 -0.39 -1.03 16 5 C -0.16 -1.50 9.71 -39.44 -0.38 -1.88 16 6 C 0.14 1.61 5.76 -82.59 -0.48 1.14 16 7 C -0.09 -0.89 4.44 -29.03 -0.13 -1.02 16 8 C 0.51 7.15 7.56 -10.99 -0.08 7.07 16 9 O -0.51 -9.55 14.77 5.56 0.08 -9.47 16 10 N -0.61 -7.70 2.19 -172.47 -0.38 -8.08 16 11 C 0.11 0.90 6.00 -3.19 -0.02 0.88 16 12 C -0.17 -1.61 5.78 -27.18 -0.16 -1.76 16 13 C 0.07 1.00 6.37 36.42 0.23 1.24 16 14 O -0.37 -6.83 9.18 -26.53 -0.24 -7.07 16 15 C 0.09 1.68 2.73 -25.78 -0.07 1.61 16 16 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 17 C 0.17 3.72 5.95 -4.04 -0.02 3.69 16 18 N -0.73 -20.11 5.49 -59.90 -0.33 -20.44 16 19 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 20 H 0.07 2.00 7.83 -52.49 -0.41 1.58 16 21 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 22 N -0.93 -29.78 13.06 55.49 0.72 -29.05 16 23 Si 0.91 23.46 29.55 -169.99 -5.02 18.44 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 27 C 0.08 1.26 4.86 -3.83 -0.02 1.24 16 28 N -0.45 -6.43 9.24 -9.47 -0.09 -6.52 16 29 C 0.11 1.30 10.86 -17.55 -0.19 1.10 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 35 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.80 7.95 -52.49 -0.42 0.38 16 37 H 0.11 0.65 7.77 -51.93 -0.40 0.25 16 38 H 0.11 0.92 7.41 -51.93 -0.38 0.54 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.50 5.88 -51.93 -0.31 0.19 16 41 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.66 7.40 -51.93 -0.38 0.27 16 45 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.39 11.45 7.53 -40.82 -0.31 11.14 16 48 H 0.25 7.77 8.31 -40.82 -0.34 7.44 16 49 H 0.09 1.49 7.27 -51.93 -0.38 1.11 16 50 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 51 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 410.39 15.07 6.18 6.18 Total: -1.00 -38.25 410.39 -9.82 -48.07 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.45 Total: 6.45 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -2.29 Total: 1.50 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: -0.07 Total: -64.10 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.16 Total: -16.55 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.02 Total: 18.44 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -38.25 -9.82 -48.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201453802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.008 kcal (2) G-P(sol) polarization free energy of solvation -38.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds