Wall clock time and date at job start Wed Apr 1 2020 04:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 109.47198 * 2 1 4 4 C 1.38678 * 120.42327 * 89.99899 * 3 2 1 5 5 C 1.38627 * 118.42245 * 179.97438 * 4 3 2 6 6 C 1.38219 * 119.16087 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.61845 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47428 * 124.99552 * 7 6 5 9 9 O 1.21282 * 119.99699 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00247 * 180.02562 * 8 7 6 11 11 C 1.47506 * 118.75552 * 0.02562 * 10 8 7 12 12 C 1.53572 * 111.02545 * 221.62605 * 11 10 8 13 13 C 1.51534 * 109.58380 * 39.97857 * 12 11 10 14 14 O 1.42151 * 108.76755 * 268.60047 * 13 12 11 15 15 C 1.38014 * 119.43763 * 87.21796 * 14 13 12 16 16 H 1.08996 * 109.46778 * 56.57627 * 15 14 13 17 17 C 1.52999 * 109.47405 * 176.57761 * 15 14 13 18 18 N 1.46506 * 109.46684 * 300.00216 * 17 15 14 19 19 C 1.36938 * 119.99589 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00325 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99817 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99673 * 359.71804 * 21 19 18 23 23 Si 1.86795 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47274 * 89.99913 * 23 21 19 25 25 H 1.48505 * 109.47015 * 209.99478 * 23 21 19 26 26 H 1.48498 * 109.47362 * 329.99904 * 23 21 19 27 27 C 1.45121 * 118.75546 * 180.02562 * 10 8 7 28 28 N 1.31859 * 120.76558 * 0.25471 * 6 5 4 29 29 C 1.31880 * 121.72127 * 359.47556 * 28 6 5 30 30 H 1.09002 * 109.47511 * 299.99695 * 1 2 3 31 31 H 1.08997 * 109.47543 * 60.00003 * 1 2 3 32 32 H 1.09005 * 109.47217 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47553 * 239.99523 * 2 1 3 34 34 H 1.09005 * 109.47002 * 119.99650 * 2 1 3 35 35 H 1.07997 * 120.78357 * 0.02562 * 4 3 2 36 36 H 1.07999 * 120.41667 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.47207 * 5.00128 * 7 6 5 38 38 H 1.08998 * 109.47568 * 245.00177 * 7 6 5 39 39 H 1.08996 * 109.16852 * 101.23243 * 11 10 8 40 40 H 1.08995 * 109.16878 * 342.02129 * 11 10 8 41 41 H 1.09007 * 109.45232 * 279.94697 * 12 11 10 42 42 H 1.09001 * 109.45668 * 160.01563 * 12 11 10 43 43 H 1.09001 * 109.59262 * 148.81548 * 13 12 11 44 44 H 1.09001 * 109.58815 * 28.38608 * 13 12 11 45 45 H 1.09000 * 109.47486 * 180.02562 * 17 15 14 46 46 H 1.09001 * 109.47362 * 59.99428 * 17 15 14 47 47 H 0.96999 * 120.00080 * 359.97438 * 18 17 15 48 48 H 0.97000 * 120.00043 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.46502 * 330.68445 * 27 10 8 50 50 H 1.09000 * 109.45631 * 210.73237 * 27 10 8 51 51 H 1.08011 * 119.61446 * 180.26860 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2663 2.0828 1.1958 5 6 2.7287 3.3888 1.1474 6 6 2.9400 3.9833 -0.0824 7 6 3.4419 5.4028 -0.1470 8 6 4.6956 5.4549 -0.9816 9 8 5.1378 4.4394 -1.4757 10 7 5.3255 6.6299 -1.1789 11 6 4.7642 7.8479 -0.5647 12 6 4.8239 9.0338 -1.5386 13 6 4.4754 8.5618 -2.9357 14 8 5.6732 8.1905 -3.6051 15 6 6.1563 6.9049 -3.4680 16 1 5.3900 6.1940 -3.7771 17 6 7.3977 6.7302 -4.3451 18 7 7.0436 6.9722 -5.7460 19 6 7.9999 6.8719 -6.7210 20 1 9.0152 6.6148 -6.4572 21 6 7.6647 7.1016 -8.0483 22 7 6.4264 7.4104 -8.3702 23 14 8.9693 6.9655 -9.3782 24 1 9.0119 5.5718 -9.8891 25 1 8.6393 7.8910 -10.4918 26 1 10.2937 7.3256 -8.8112 27 6 6.5304 6.6490 -1.9877 28 7 2.7024 3.3247 -1.1997 29 6 2.2671 2.0798 -1.1916 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.0933 1.5923 2.1423 36 1 2.9213 3.9348 2.0591 37 1 3.6612 5.7569 0.8603 38 1 2.6790 6.0379 -0.5973 39 1 5.3343 8.0920 0.3317 40 1 3.7261 7.6636 -0.2885 41 1 5.8297 9.4540 -1.5377 42 1 4.1118 9.7972 -1.2252 43 1 3.9861 9.3679 -3.4825 44 1 3.8089 7.7015 -2.8751 45 1 7.7789 5.7148 -4.2372 46 1 8.1639 7.4412 -4.0361 47 1 6.1317 7.2026 -5.9830 48 1 6.1919 7.5706 -9.2978 49 1 7.0402 5.6894 -1.9025 50 1 7.1902 7.4428 -1.6374 51 1 2.0876 1.5710 -2.1273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201453802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:22 Heat of formation + Delta-G solvation = -55.179942 kcal Electronic energy + Delta-G solvation = -30777.281125 eV Core-core repulsion = 26676.041563 eV Total energy + Delta-G solvation = -4101.239562 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.82854 -41.07424 -39.57155 -36.90011 -36.22623 -35.88990 -34.34121 -33.33151 -32.66877 -32.37267 -30.41045 -28.89696 -27.54253 -26.57829 -24.92145 -24.71726 -23.93624 -22.80341 -22.28340 -22.00549 -20.04938 -19.27627 -18.48252 -17.93386 -17.63828 -17.53899 -17.07598 -16.90823 -16.45256 -16.17881 -15.96973 -15.57475 -15.18961 -15.13471 -14.84840 -14.78336 -14.66758 -14.52761 -14.13741 -13.92755 -13.88271 -13.68189 -13.41663 -13.33429 -13.15406 -13.03280 -12.80727 -12.77932 -12.58034 -12.28622 -12.18006 -12.12729 -11.98777 -11.85545 -11.81841 -11.47111 -10.99849 -10.88049 -10.67407 -10.54361 -10.23898 -9.71210 -9.60648 -9.03508 -7.95498 -5.25818 0.13922 0.42429 1.44512 1.48573 1.56923 1.62129 1.96359 2.54955 2.72166 2.84445 3.27390 3.37395 3.58589 3.65442 3.75375 3.84870 3.88868 4.00673 4.02628 4.06970 4.10948 4.15104 4.27843 4.32400 4.36908 4.43928 4.48117 4.49000 4.51426 4.53576 4.60616 4.69780 4.75542 4.77754 4.86035 4.88567 4.95384 5.05580 5.06750 5.08543 5.14447 5.19110 5.22565 5.35103 5.42221 5.44818 5.56184 5.82260 6.24701 6.32351 6.75360 7.14986 7.20408 7.30618 8.04738 8.30696 9.28640 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.002440 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.123347 B =11472.327784 C =13211.937426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.136 4.136 4 C -0.079 4.079 5 C -0.157 4.157 6 C 0.107 3.893 7 C -0.082 4.082 8 C 0.504 3.496 9 O -0.572 6.572 10 N -0.611 5.611 11 C 0.099 3.901 12 C -0.156 4.156 13 C 0.063 3.937 14 O -0.397 6.397 15 C 0.106 3.894 16 H 0.012 0.988 17 C 0.163 3.837 18 N -0.740 5.740 19 C -0.249 4.249 20 H 0.078 0.922 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.982 3.018 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.266 1.266 27 C 0.098 3.902 28 N -0.500 5.500 29 C 0.076 3.924 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.154 0.846 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.039 0.961 45 H 0.030 0.970 46 H 0.035 0.965 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.074 0.926 50 H 0.103 0.897 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.417 -5.231 30.707 33.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.138 4.138 4 C -0.105 4.105 5 C -0.177 4.177 6 C -0.031 4.031 7 C -0.122 4.122 8 C 0.293 3.707 9 O -0.450 6.450 10 N -0.344 5.344 11 C -0.021 4.021 12 C -0.194 4.194 13 C -0.013 4.013 14 O -0.316 6.316 15 C 0.046 3.954 16 H 0.030 0.970 17 C 0.036 3.964 18 N -0.382 5.382 19 C -0.380 4.380 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.810 3.190 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.191 1.191 27 C -0.027 4.027 28 N -0.209 5.209 29 C -0.081 4.081 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.183 0.817 36 H 0.188 0.812 37 H 0.171 0.829 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.131 0.869 41 H 0.093 0.907 42 H 0.140 0.860 43 H 0.111 0.889 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.205 0.795 48 H 0.060 0.940 49 H 0.092 0.908 50 H 0.121 0.879 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.764 -5.216 29.517 32.579 hybrid contribution 0.067 -0.696 -0.847 1.098 sum -12.697 -5.911 28.670 31.908 Atomic orbital electron populations 1.21728 0.93783 1.02652 1.01900 1.20524 0.96751 0.90421 1.03954 1.21186 0.99966 0.98770 0.93880 1.21843 0.95549 0.94191 0.98906 1.22276 1.00274 0.96374 0.98736 1.20991 0.96698 0.96130 0.89268 1.20788 0.94469 0.93530 1.03407 1.21176 0.85924 0.82735 0.80863 1.90740 1.67263 1.35718 1.51252 1.48056 1.26514 1.08784 1.51062 1.22392 1.01288 0.82458 0.95987 1.22438 1.04657 0.98725 0.93619 1.22416 0.85580 0.99212 0.94078 1.86348 1.42646 1.29502 1.73103 1.21845 0.94778 0.83912 0.94850 0.96967 1.20753 0.94316 0.97556 0.83794 1.42420 1.09841 1.84231 1.01740 1.19699 0.91818 1.38531 0.87967 0.90402 1.25699 0.98840 1.03037 0.99633 1.69867 1.18972 1.56005 1.17418 0.85021 0.78481 0.77108 0.78416 1.21378 1.21821 1.19067 1.22013 0.87804 1.03453 0.89383 1.67371 1.10561 1.10025 1.32910 1.22780 0.96094 0.90524 0.98676 0.92155 0.93593 0.90862 0.90884 0.89166 0.81683 0.81165 0.82851 0.85694 0.88229 0.86877 0.90743 0.85952 0.88943 0.94284 0.95227 0.94742 0.79536 0.93971 0.90753 0.87863 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 71.98 0.71 -0.81 16 2 C -0.08 -0.98 6.09 29.84 0.18 -0.80 16 3 C -0.14 -2.48 5.15 -19.77 -0.10 -2.58 16 4 C -0.08 -1.15 9.86 22.47 0.22 -0.93 16 5 C -0.16 -2.42 9.71 22.36 0.22 -2.20 16 6 C 0.11 2.43 5.76 42.55 0.24 2.68 16 7 C -0.08 -1.41 4.44 29.10 0.13 -1.28 16 8 C 0.50 13.86 7.56 87.66 0.66 14.53 16 9 O -0.57 -22.43 14.77 -3.04 -0.04 -22.48 16 10 N -0.61 -14.54 2.19 -817.97 -1.79 -16.33 16 11 C 0.10 1.29 6.00 86.38 0.52 1.81 16 12 C -0.16 -2.52 5.78 30.31 0.18 -2.35 16 13 C 0.06 1.70 6.37 71.50 0.46 2.15 16 14 O -0.40 -15.19 9.18 -117.85 -1.08 -16.27 16 15 C 0.11 4.23 2.73 31.21 0.09 4.31 16 16 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 17 C 0.16 7.61 5.95 86.38 0.51 8.12 16 18 N -0.74 -42.91 5.49 -343.44 -1.88 -44.79 16 19 C -0.25 -15.20 9.99 84.03 0.84 -14.36 16 20 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 21 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 22 N -0.97 -64.01 13.06 21.65 0.28 -63.73 16 23 Si 0.98 49.02 29.55 68.60 2.03 51.05 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 27 C 0.10 2.98 4.86 87.26 0.42 3.41 16 28 N -0.50 -15.04 9.24 -183.89 -1.70 -16.74 16 29 C 0.08 1.94 10.86 84.67 0.92 2.86 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 34 H 0.09 0.82 8.10 -2.38 -0.02 0.80 16 35 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.17 1.20 7.95 -2.91 -0.02 1.17 16 37 H 0.15 1.08 7.77 -2.39 -0.02 1.06 16 38 H 0.13 1.75 7.41 -2.39 -0.02 1.73 16 39 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.11 0.79 5.88 -2.39 -0.01 0.78 16 41 H 0.07 1.38 8.01 -2.38 -0.02 1.36 16 42 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.04 1.10 7.40 -2.39 -0.02 1.08 16 45 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.37 23.34 7.53 -92.71 -0.70 22.64 16 48 H 0.25 15.87 8.31 -92.71 -0.77 15.10 16 49 H 0.07 2.52 7.27 -2.39 -0.02 2.50 16 50 H 0.10 2.66 8.11 -2.39 -0.02 2.64 16 51 H 0.15 3.52 8.06 -2.90 -0.02 3.49 16 Total: -1.00 -90.40 410.39 2.70 -87.70 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.22 Total: 31.53 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 6.67 Total: 10.06 kcal Atomic # 7 Polarization: -136.50 SS G_CDS: -5.09 Total: -141.59 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.13 Total: -38.75 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.03 Total: 51.05 kcal Total: -90.40 2.70 -87.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201453802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.521 kcal (2) G-P(sol) polarization free energy of solvation -90.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds