Wall clock time and date at job start Wed Apr 1 2020 04:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.47286 * 2 1 4 4 C 1.38350 * 120.34574 * 269.73085 * 3 2 1 5 5 N 1.31930 * 121.07776 * 179.68341 * 4 3 2 6 6 C 1.31697 * 121.87773 * 0.62261 * 5 4 3 7 7 C 1.39526 * 120.56656 * 359.66401 * 6 5 4 8 8 C 1.47837 * 120.55683 * 180.02562 * 7 6 5 9 9 O 1.21548 * 120.00246 * 33.33262 * 8 7 6 10 10 N 1.34777 * 119.99726 * 213.32886 * 8 7 6 11 11 C 1.46926 * 120.62809 * 5.07122 * 10 8 7 12 12 C 1.53629 * 108.53927 * 126.37395 * 11 10 8 13 13 C 1.53040 * 109.24414 * 54.85157 * 12 11 10 14 14 C 1.53038 * 109.53908 * 298.51448 * 13 12 11 15 15 H 1.09003 * 109.49969 * 301.41230 * 14 13 12 16 16 N 1.46507 * 109.52305 * 181.33174 * 14 13 12 17 17 C 1.36932 * 119.99955 * 300.14388 * 16 14 13 18 18 H 1.08007 * 119.99918 * 323.42769 * 17 16 14 19 19 C 1.38809 * 120.00088 * 143.42540 * 17 16 14 20 20 N 1.31623 * 119.99895 * 337.35310 * 19 17 16 21 21 Si 1.86794 * 120.00296 * 157.35192 * 19 17 16 22 22 H 1.48498 * 109.47129 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47684 * 120.00029 * 21 19 17 24 24 H 1.48504 * 109.46997 * 240.00077 * 21 19 17 25 25 C 1.46500 * 119.99747 * 120.14377 * 16 14 13 26 26 C 1.53008 * 109.46951 * 84.56058 * 25 16 14 27 27 O 1.42894 * 109.47221 * 64.99609 * 26 25 16 28 28 C 1.46924 * 120.62981 * 185.35333 * 10 8 7 29 29 C 1.38354 * 120.35021 * 90.00005 * 3 2 1 30 30 H 1.09004 * 109.47187 * 59.99687 * 1 2 3 31 31 H 1.08995 * 109.47371 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47057 * 300.00023 * 1 2 3 33 33 H 1.08993 * 109.46753 * 240.00048 * 2 1 3 34 34 H 1.08997 * 109.46911 * 120.00027 * 2 1 3 35 35 H 1.08006 * 119.46293 * 359.97438 * 4 3 2 36 36 H 1.07998 * 119.71698 * 179.68886 * 6 5 4 37 37 H 1.08998 * 109.58857 * 246.20053 * 11 10 8 38 38 H 1.08994 * 109.58901 * 6.63426 * 11 10 8 39 39 H 1.09004 * 109.62883 * 294.86331 * 12 11 10 40 40 H 1.08997 * 109.45837 * 174.74347 * 12 11 10 41 41 H 1.09003 * 109.46067 * 178.48963 * 13 12 11 42 42 H 1.08996 * 109.45668 * 58.53237 * 13 12 11 43 43 H 0.97001 * 119.99815 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47111 * 204.55504 * 25 16 14 45 45 H 1.09001 * 109.47502 * 324.55786 * 25 16 14 46 46 H 1.08995 * 109.46715 * 184.99700 * 26 25 16 47 47 H 1.08997 * 109.46552 * 304.99689 * 26 25 16 48 48 H 0.96702 * 113.99942 * 179.97438 * 27 26 25 49 49 H 1.08997 * 109.58819 * 353.37703 * 28 10 8 50 50 H 1.09004 * 109.58585 * 113.65593 * 28 10 8 51 51 H 1.08006 * 120.85069 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2707 2.0779 -1.1939 5 7 2.7047 3.3237 -1.2108 6 6 2.9417 3.9927 -0.1015 7 6 2.7319 3.3992 1.1437 8 6 2.9976 4.1506 2.3888 9 8 2.8083 5.3506 2.4266 10 7 3.4495 3.5049 3.4821 11 6 3.7884 2.0765 3.4212 12 6 5.2216 1.8918 3.9427 13 6 5.3326 2.5048 5.3406 14 6 5.0368 4.0045 5.2668 15 1 5.7394 4.4807 4.5828 16 7 5.1743 4.5968 6.5997 17 6 4.3892 4.1533 7.6303 18 1 3.3641 3.8685 7.4443 19 6 4.9108 4.0699 8.9139 20 7 6.2116 3.9751 9.0908 21 14 3.7667 4.0921 10.3903 22 1 2.3609 4.2054 9.9254 23 1 3.9328 2.8358 11.1644 24 1 4.0967 5.2535 11.2549 25 6 6.1517 5.6635 6.8299 26 6 5.5367 7.0105 6.4449 27 8 4.4449 7.3030 7.3191 28 6 3.6069 4.2145 4.7589 29 6 2.2655 2.0799 1.1939 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0942 1.5642 -2.1275 36 1 3.3012 5.0097 -0.1560 37 1 3.0948 1.5096 4.0422 38 1 3.7259 1.7298 2.3897 39 1 5.9224 2.3879 3.2712 40 1 5.4558 0.8284 3.9920 41 1 6.3411 2.3520 5.7250 42 1 4.6142 2.0252 6.0054 43 1 6.5761 3.9165 9.9878 44 1 6.4307 5.6794 7.8835 45 1 7.0380 5.4816 6.2221 46 1 6.2912 7.7924 6.5316 47 1 5.1770 6.9651 5.4169 48 1 4.0066 8.1447 7.1330 49 1 3.4245 5.2787 4.6105 50 1 2.8971 3.8201 5.4861 51 1 2.0916 1.5895 2.1404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264076212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:36 Heat of formation + Delta-G solvation = -19.798899 kcal Electronic energy + Delta-G solvation = -31842.868892 eV Core-core repulsion = 27743.163567 eV Total energy + Delta-G solvation = -4099.705325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.02867 -39.40057 -37.47910 -36.21362 -35.07636 -34.67573 -32.94182 -31.86051 -31.26995 -30.02183 -29.56739 -27.30148 -25.87178 -24.74504 -24.10951 -23.83970 -22.48646 -21.88892 -20.80356 -19.80100 -18.97981 -17.43415 -17.14321 -16.75342 -16.54009 -16.37133 -15.69390 -15.13915 -14.83811 -14.54877 -14.37031 -14.21985 -14.11563 -14.03381 -13.67918 -13.55768 -13.32476 -13.12437 -12.93786 -12.74855 -12.60439 -12.43512 -12.38274 -12.02348 -11.86737 -11.42328 -11.32659 -11.03018 -10.96894 -10.82573 -10.69086 -10.39616 -10.27315 -10.13512 -9.92425 -9.88339 -9.79457 -9.54904 -9.44182 -9.21662 -9.06323 -8.50599 -8.27198 -6.55085 -5.74648 -3.26813 0.53835 0.91594 2.79235 3.09686 3.42450 3.51351 3.54927 3.58507 4.10049 4.35585 4.38065 4.53844 4.56086 4.64890 4.72489 4.94276 4.97174 5.05701 5.16669 5.19833 5.25400 5.35591 5.36642 5.45862 5.50281 5.51858 5.54601 5.66285 5.77051 5.82441 5.83927 5.90524 5.94646 6.00217 6.13600 6.19747 6.27968 6.33000 6.35283 6.48574 6.57708 6.65969 6.76972 6.81521 7.02518 7.18154 7.55331 7.64817 7.67383 7.87246 8.24943 8.47231 8.62869 9.21811 9.86451 10.41510 11.28500 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.002928 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.153908 B = 9559.988811 C =10334.672258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.485 5.485 6 C 0.147 3.853 7 C -0.171 4.171 8 C 0.557 3.443 9 O -0.537 6.537 10 N -0.596 5.596 11 C 0.092 3.908 12 C -0.133 4.133 13 C -0.121 4.121 14 C 0.167 3.833 15 H 0.049 0.951 16 N -0.568 5.568 17 C -0.239 4.239 18 H 0.057 0.943 19 C 0.018 3.982 20 N -0.891 5.891 21 Si 0.896 3.104 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.289 1.289 25 C 0.147 3.853 26 C 0.057 3.943 27 O -0.545 6.545 28 C 0.103 3.897 29 C -0.049 4.049 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.165 0.835 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.252 0.748 44 H 0.102 0.898 45 H 0.036 0.964 46 H 0.020 0.980 47 H 0.024 0.976 48 H 0.351 0.649 49 H 0.085 0.915 50 H 0.074 0.926 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 -7.486 -17.835 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.145 4.145 4 C -0.041 4.041 5 N -0.192 5.192 6 C -0.011 4.011 7 C -0.176 4.176 8 C 0.344 3.656 9 O -0.415 6.415 10 N -0.328 5.328 11 C -0.031 4.031 12 C -0.172 4.172 13 C -0.161 4.161 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.287 5.287 17 C -0.369 4.369 18 H 0.074 0.926 19 C -0.182 4.182 20 N -0.534 5.534 21 Si 0.727 3.273 22 H -0.203 1.203 23 H -0.222 1.222 24 H -0.216 1.216 25 C 0.021 3.979 26 C -0.023 4.023 27 O -0.346 6.346 28 C -0.020 4.020 29 C -0.075 4.075 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.174 0.826 36 H 0.182 0.818 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.120 0.880 45 H 0.054 0.946 46 H 0.038 0.962 47 H 0.042 0.958 48 H 0.194 0.806 49 H 0.103 0.897 50 H 0.092 0.908 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.388 -7.030 -18.163 20.208 hybrid contribution -0.773 0.190 1.428 1.635 sum -6.162 -6.840 -16.735 19.100 Atomic orbital electron populations 1.21776 0.94381 1.02081 1.02412 1.20488 0.96389 0.91340 1.03547 1.20887 1.01500 0.98343 0.93793 1.22863 0.93198 0.90452 0.97563 1.67784 1.12181 1.08375 1.30863 1.22928 0.92658 0.99498 0.85973 1.21075 1.05042 0.95557 0.95899 1.18071 0.77904 0.86824 0.82778 1.90781 1.53053 1.13955 1.83734 1.48154 1.63319 1.10665 1.10632 1.22393 0.97532 0.81453 1.01686 1.22056 0.95195 1.00946 0.99010 1.21926 1.02885 0.97473 0.93770 1.20599 0.92741 0.92344 0.88473 0.93305 1.43659 1.43592 1.37322 1.04142 1.18778 0.91849 1.39532 0.86734 0.92561 1.25004 0.95222 0.99404 0.98527 1.70028 1.10841 1.51621 1.20882 0.86349 0.80982 0.76836 0.83176 1.20267 1.22215 1.21577 1.20990 0.89450 0.83619 1.03851 1.23092 0.88045 0.99180 0.91969 1.86816 1.48481 1.41380 1.57944 1.22397 1.00470 0.97677 0.81450 1.21966 0.93701 0.92682 0.99127 0.92475 0.91997 0.92420 0.90419 0.90448 0.82576 0.81783 0.91027 0.89559 0.92197 0.91321 0.91714 0.91215 0.93851 0.88043 0.94552 0.96187 0.95776 0.80630 0.89653 0.90803 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.90 37.16 0.37 -0.49 16 2 C -0.08 -0.46 6.09 -27.88 -0.17 -0.63 16 3 C -0.14 -1.22 5.15 -104.54 -0.54 -1.76 16 4 C 0.12 1.08 10.85 -17.47 -0.19 0.89 16 5 N -0.48 -5.74 10.35 -12.91 -0.13 -5.88 16 6 C 0.15 1.86 10.78 -17.13 -0.18 1.68 16 7 C -0.17 -2.20 5.37 -104.82 -0.56 -2.76 16 8 C 0.56 8.96 7.43 -12.33 -0.09 8.87 16 9 O -0.54 -10.51 16.22 5.32 0.09 -10.42 16 10 N -0.60 -9.27 2.97 -173.62 -0.51 -9.79 16 11 C 0.09 1.13 4.82 -3.48 -0.02 1.12 16 12 C -0.13 -1.80 6.10 -26.38 -0.16 -1.96 16 13 C -0.12 -2.19 5.11 -26.69 -0.14 -2.32 16 14 C 0.17 3.32 2.78 -67.81 -0.19 3.13 16 15 H 0.05 0.97 7.87 -51.93 -0.41 0.56 16 16 N -0.57 -13.38 2.33 -165.52 -0.39 -13.76 16 17 C -0.24 -6.26 8.01 -15.06 -0.12 -6.38 16 18 H 0.06 1.50 6.76 -52.48 -0.35 1.14 16 19 C 0.02 0.49 4.87 -17.43 -0.08 0.41 16 20 N -0.89 -25.10 11.57 55.49 0.64 -24.46 16 21 Si 0.90 21.98 29.61 -169.99 -5.03 16.94 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 C 0.15 3.41 5.57 -4.04 -0.02 3.39 16 26 C 0.06 1.16 7.39 37.16 0.27 1.44 16 27 O -0.54 -11.65 13.39 -35.23 -0.47 -12.12 16 28 C 0.10 1.94 5.77 -3.72 -0.02 1.92 16 29 C -0.05 -0.50 7.17 -38.87 -0.28 -0.77 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 35 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.17 2.02 7.98 -52.49 -0.42 1.61 16 37 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 38 H 0.09 0.89 4.27 -51.93 -0.22 0.66 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 42 H 0.07 1.37 7.70 -51.93 -0.40 0.97 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.10 2.71 5.57 -51.93 -0.29 2.42 16 45 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.35 5.60 9.12 45.56 0.42 6.02 16 49 H 0.09 1.79 7.00 -51.93 -0.36 1.43 16 50 H 0.07 1.48 6.80 -51.93 -0.35 1.13 16 51 H 0.15 1.32 5.88 -52.48 -0.31 1.01 16 LS Contribution 403.63 15.07 6.08 6.08 Total: -1.00 -32.33 403.63 -9.17 -41.50 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.32 Total: 6.14 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -2.13 Total: 5.76 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.39 Total: -53.88 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.39 Total: -22.54 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.33 -9.17 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264076212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.703 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds