Wall clock time and date at job start Wed Apr 1 2020 04:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50702 * 109.47286 * 2 1 4 4 C 1.38350 * 120.34574 * 269.73085 * 3 2 1 5 5 N 1.31930 * 121.07776 * 179.68341 * 4 3 2 6 6 C 1.31697 * 121.87773 * 0.62261 * 5 4 3 7 7 C 1.39526 * 120.56656 * 359.66401 * 6 5 4 8 8 C 1.47837 * 120.55683 * 180.02562 * 7 6 5 9 9 O 1.21548 * 120.00246 * 33.33262 * 8 7 6 10 10 N 1.34777 * 119.99726 * 213.32886 * 8 7 6 11 11 C 1.46926 * 120.62809 * 5.07122 * 10 8 7 12 12 C 1.53629 * 108.53927 * 126.37395 * 11 10 8 13 13 C 1.53040 * 109.24414 * 54.85157 * 12 11 10 14 14 C 1.53038 * 109.53908 * 298.51448 * 13 12 11 15 15 H 1.09003 * 109.49969 * 301.41230 * 14 13 12 16 16 N 1.46507 * 109.52305 * 181.33174 * 14 13 12 17 17 C 1.36932 * 119.99955 * 300.14388 * 16 14 13 18 18 H 1.08007 * 119.99918 * 323.42769 * 17 16 14 19 19 C 1.38809 * 120.00088 * 143.42540 * 17 16 14 20 20 N 1.31623 * 119.99895 * 337.35310 * 19 17 16 21 21 Si 1.86794 * 120.00296 * 157.35192 * 19 17 16 22 22 H 1.48498 * 109.47129 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47684 * 120.00029 * 21 19 17 24 24 H 1.48504 * 109.46997 * 240.00077 * 21 19 17 25 25 C 1.46500 * 119.99747 * 120.14377 * 16 14 13 26 26 C 1.53008 * 109.46951 * 84.56058 * 25 16 14 27 27 O 1.42894 * 109.47221 * 64.99609 * 26 25 16 28 28 C 1.46924 * 120.62981 * 185.35333 * 10 8 7 29 29 C 1.38354 * 120.35021 * 90.00005 * 3 2 1 30 30 H 1.09004 * 109.47187 * 59.99687 * 1 2 3 31 31 H 1.08995 * 109.47371 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47057 * 300.00023 * 1 2 3 33 33 H 1.08993 * 109.46753 * 240.00048 * 2 1 3 34 34 H 1.08997 * 109.46911 * 120.00027 * 2 1 3 35 35 H 1.08006 * 119.46293 * 359.97438 * 4 3 2 36 36 H 1.07998 * 119.71698 * 179.68886 * 6 5 4 37 37 H 1.08998 * 109.58857 * 246.20053 * 11 10 8 38 38 H 1.08994 * 109.58901 * 6.63426 * 11 10 8 39 39 H 1.09004 * 109.62883 * 294.86331 * 12 11 10 40 40 H 1.08997 * 109.45837 * 174.74347 * 12 11 10 41 41 H 1.09003 * 109.46067 * 178.48963 * 13 12 11 42 42 H 1.08996 * 109.45668 * 58.53237 * 13 12 11 43 43 H 0.97001 * 119.99815 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.47111 * 204.55504 * 25 16 14 45 45 H 1.09001 * 109.47502 * 324.55786 * 25 16 14 46 46 H 1.08995 * 109.46715 * 184.99700 * 26 25 16 47 47 H 1.08997 * 109.46552 * 304.99689 * 26 25 16 48 48 H 0.96702 * 113.99942 * 179.97438 * 27 26 25 49 49 H 1.08997 * 109.58819 * 353.37703 * 28 10 8 50 50 H 1.09004 * 109.58585 * 113.65593 * 28 10 8 51 51 H 1.08006 * 120.85069 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2707 2.0779 -1.1939 5 7 2.7047 3.3237 -1.2108 6 6 2.9417 3.9927 -0.1015 7 6 2.7319 3.3992 1.1437 8 6 2.9976 4.1506 2.3888 9 8 2.8083 5.3506 2.4266 10 7 3.4495 3.5049 3.4821 11 6 3.7884 2.0765 3.4212 12 6 5.2216 1.8918 3.9427 13 6 5.3326 2.5048 5.3406 14 6 5.0368 4.0045 5.2668 15 1 5.7394 4.4807 4.5828 16 7 5.1743 4.5968 6.5997 17 6 4.3892 4.1533 7.6303 18 1 3.3641 3.8685 7.4443 19 6 4.9108 4.0699 8.9139 20 7 6.2116 3.9751 9.0908 21 14 3.7667 4.0921 10.3903 22 1 2.3609 4.2054 9.9254 23 1 3.9328 2.8358 11.1644 24 1 4.0967 5.2535 11.2549 25 6 6.1517 5.6635 6.8299 26 6 5.5367 7.0105 6.4449 27 8 4.4449 7.3030 7.3191 28 6 3.6069 4.2145 4.7589 29 6 2.2655 2.0799 1.1939 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0942 1.5642 -2.1275 36 1 3.3012 5.0097 -0.1560 37 1 3.0948 1.5096 4.0422 38 1 3.7259 1.7298 2.3897 39 1 5.9224 2.3879 3.2712 40 1 5.4558 0.8284 3.9920 41 1 6.3411 2.3520 5.7250 42 1 4.6142 2.0252 6.0054 43 1 6.5761 3.9165 9.9878 44 1 6.4307 5.6794 7.8835 45 1 7.0380 5.4816 6.2221 46 1 6.2912 7.7924 6.5316 47 1 5.1770 6.9651 5.4169 48 1 4.0066 8.1447 7.1330 49 1 3.4245 5.2787 4.6105 50 1 2.8971 3.8201 5.4861 51 1 2.0916 1.5895 2.1404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264076212.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:35 Heat of formation + Delta-G solvation = -41.500386 kcal Electronic energy + Delta-G solvation = -31843.809939 eV Core-core repulsion = 27743.163567 eV Total energy + Delta-G solvation = -4100.646372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.03270 -40.53740 -38.99550 -37.78073 -36.38496 -35.64418 -34.25651 -33.12839 -32.95701 -31.11344 -30.66956 -29.08494 -27.07373 -26.06713 -25.29452 -24.84732 -23.78686 -22.87445 -22.29473 -21.39116 -20.17027 -18.55658 -18.28872 -18.17803 -17.98853 -17.62075 -17.00850 -16.72148 -16.22561 -16.05047 -15.52955 -15.48360 -15.25633 -15.07619 -14.76537 -14.61942 -14.56459 -14.47427 -14.20971 -14.05836 -13.87295 -13.57803 -13.50738 -13.14430 -13.07467 -12.86894 -12.70772 -12.52307 -12.42682 -12.29871 -11.99572 -11.83898 -11.76730 -11.70466 -11.58819 -11.28838 -11.24516 -10.73508 -10.68941 -10.44100 -10.41717 -10.02634 -9.71403 -8.49740 -7.77745 -5.32084 -0.34076 0.11853 1.44245 1.50308 1.57761 1.62731 1.87011 2.56344 2.70444 3.21748 3.34091 3.49921 3.52502 3.70712 3.73898 3.77185 3.88735 4.01893 4.05689 4.08241 4.16222 4.28171 4.39794 4.41053 4.49758 4.53711 4.55756 4.58343 4.63557 4.74048 4.84237 4.84822 4.86877 4.91636 4.95325 4.96465 4.99114 5.05190 5.18104 5.19714 5.35921 5.40069 5.43022 5.47633 5.60075 5.62562 5.71437 5.78529 6.32857 6.51898 6.83623 6.99251 7.12712 7.23655 7.91059 8.43006 9.21727 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015380 B = 0.002928 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.153908 B = 9559.988811 C =10334.672258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.129 4.129 4 C 0.119 3.881 5 N -0.502 5.502 6 C 0.135 3.865 7 C -0.184 4.184 8 C 0.557 3.443 9 O -0.582 6.582 10 N -0.595 5.595 11 C 0.091 3.909 12 C -0.123 4.123 13 C -0.112 4.112 14 C 0.167 3.833 15 H 0.047 0.953 16 N -0.581 5.581 17 C -0.229 4.229 18 H 0.049 0.951 19 C -0.028 4.028 20 N -0.917 5.917 21 Si 0.945 3.055 22 H -0.274 1.274 23 H -0.292 1.292 24 H -0.298 1.298 25 C 0.143 3.857 26 C 0.067 3.933 27 O -0.573 6.573 28 C 0.121 3.879 29 C -0.048 4.048 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.190 0.810 36 H 0.154 0.846 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.040 0.960 42 H 0.052 0.948 43 H 0.247 0.753 44 H 0.068 0.932 45 H 0.043 0.957 46 H 0.047 0.953 47 H 0.027 0.973 48 H 0.375 0.625 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 -9.993 -20.190 23.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.131 4.131 4 C -0.038 4.038 5 N -0.209 5.209 6 C -0.022 4.022 7 C -0.190 4.190 8 C 0.346 3.654 9 O -0.463 6.463 10 N -0.326 5.326 11 C -0.030 4.030 12 C -0.161 4.161 13 C -0.151 4.151 14 C 0.059 3.941 15 H 0.065 0.935 16 N -0.301 5.301 17 C -0.360 4.360 18 H 0.067 0.933 19 C -0.225 4.225 20 N -0.563 5.563 21 Si 0.775 3.225 22 H -0.199 1.199 23 H -0.219 1.219 24 H -0.226 1.226 25 C 0.017 3.983 26 C -0.012 4.012 27 O -0.378 6.378 28 C -0.003 4.003 29 C -0.074 4.074 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.207 0.793 36 H 0.172 0.828 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.045 0.955 48 H 0.221 0.779 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.481 -9.554 -20.549 23.570 hybrid contribution -0.484 0.953 2.024 2.289 sum -6.965 -8.602 -18.524 21.579 Atomic orbital electron populations 1.21787 0.94344 1.02816 1.01796 1.20592 0.96203 0.89379 1.05313 1.21194 0.99675 0.99517 0.92681 1.23490 0.91394 0.89551 0.99349 1.67818 1.13029 1.09748 1.30340 1.22825 0.93487 0.99508 0.86394 1.20766 1.07495 0.96699 0.94001 1.18584 0.76778 0.86473 0.83595 1.90749 1.54918 1.16118 1.84548 1.48154 1.63200 1.11927 1.09321 1.22673 0.97009 0.79439 1.03851 1.21993 0.96144 1.02428 0.95579 1.21754 1.00734 0.96057 0.96553 1.20700 0.93288 0.93490 0.86605 0.93503 1.43805 1.43377 1.38006 1.04932 1.18843 0.91707 1.37900 0.87504 0.93343 1.25526 0.96153 1.00436 1.00382 1.70129 1.11929 1.53510 1.20691 0.85568 0.79720 0.76325 0.80838 1.19913 1.21882 1.22583 1.20929 0.90121 0.85325 1.01933 1.22883 0.88414 0.98309 0.91644 1.86732 1.49088 1.43416 1.58529 1.21880 0.99102 0.96506 0.82818 1.22146 0.93106 0.91478 1.00652 0.92602 0.90642 0.93602 0.88255 0.89202 0.79335 0.82834 0.89330 0.86582 0.92010 0.88166 0.94111 0.92943 0.94402 0.91439 0.93868 0.93452 0.95467 0.77905 0.92273 0.92269 0.81937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.90 71.98 0.71 -0.44 16 2 C -0.08 -0.52 6.09 29.85 0.18 -0.34 16 3 C -0.13 -1.69 5.15 -19.81 -0.10 -1.79 16 4 C 0.12 1.79 10.85 84.70 0.92 2.70 16 5 N -0.50 -10.97 10.35 -194.75 -2.01 -12.98 16 6 C 0.14 3.35 10.78 85.02 0.92 4.26 16 7 C -0.18 -4.53 5.37 -19.99 -0.11 -4.63 16 8 C 0.56 17.88 7.43 86.78 0.64 18.52 16 9 O -0.58 -23.58 16.22 -3.87 -0.06 -23.64 16 10 N -0.59 -18.17 2.97 -821.50 -2.44 -20.61 16 11 C 0.09 2.01 4.82 86.51 0.42 2.42 16 12 C -0.12 -3.02 6.10 30.82 0.19 -2.84 16 13 C -0.11 -4.02 5.11 30.62 0.16 -3.86 16 14 C 0.17 6.75 2.78 45.06 0.13 6.88 16 15 H 0.05 1.90 7.87 -2.39 -0.02 1.88 16 16 N -0.58 -28.10 2.33 -677.58 -1.58 -29.68 16 17 C -0.23 -12.25 8.01 84.03 0.67 -11.57 16 18 H 0.05 2.64 6.76 -2.91 -0.02 2.62 16 19 C -0.03 -1.57 4.87 84.86 0.41 -1.16 16 20 N -0.92 -53.19 11.57 21.65 0.25 -52.94 16 21 Si 0.95 46.01 29.61 68.60 2.03 48.05 16 22 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 25 C 0.14 6.80 5.57 86.38 0.48 7.28 16 26 C 0.07 2.73 7.39 71.98 0.53 3.27 16 27 O -0.57 -24.59 13.39 -148.98 -2.00 -26.59 16 28 C 0.12 4.67 5.77 86.36 0.50 5.16 16 29 C -0.05 -0.83 7.17 22.73 0.16 -0.67 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16 32 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.10 0.33 8.09 -2.39 -0.02 0.31 16 34 H 0.09 0.46 8.09 -2.39 -0.02 0.45 16 35 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.15 3.96 7.98 -2.91 -0.02 3.93 16 37 H 0.09 1.72 8.06 -2.39 -0.02 1.70 16 38 H 0.12 1.94 4.27 -2.39 -0.01 1.93 16 39 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.05 2.06 7.70 -2.39 -0.02 2.04 16 43 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 44 H 0.07 3.73 5.57 -2.39 -0.01 3.71 16 45 H 0.04 1.93 8.04 -2.39 -0.02 1.91 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.37 11.81 9.12 -74.06 -0.68 11.13 16 49 H 0.06 2.58 7.00 -2.39 -0.02 2.57 16 50 H 0.06 2.44 6.80 -2.39 -0.02 2.42 16 51 H 0.16 2.28 5.88 -2.91 -0.02 2.26 16 Total: -1.00 -73.60 403.63 1.27 -72.33 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.27 Total: 22.86 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 6.81 Total: 23.20 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -5.78 Total: -116.21 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -2.06 Total: -50.22 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.05 kcal Total: -73.60 1.27 -72.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264076212.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.827 kcal (2) G-P(sol) polarization free energy of solvation -73.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds