Wall clock time and date at job start Wed Apr 1 2020 04:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47290 * 2 1 4 4 C 1.38350 * 120.35154 * 89.99950 * 3 2 1 5 5 N 1.31927 * 121.08131 * 180.02562 * 4 3 2 6 6 C 1.31694 * 121.87611 * 359.97438 * 5 4 3 7 7 C 1.39521 * 120.57126 * 0.02562 * 6 5 4 8 8 C 1.47839 * 120.56163 * 179.97438 * 7 6 5 9 9 O 1.21549 * 119.99921 * 143.18184 * 8 7 6 10 10 N 1.34774 * 119.99998 * 323.19370 * 8 7 6 11 11 C 1.46929 * 120.63136 * 354.32195 * 10 8 7 12 12 C 1.53190 * 108.77353 * 233.63222 * 11 10 8 13 13 C 1.53032 * 109.31852 * 305.36775 * 12 11 10 14 14 C 1.53040 * 109.54056 * 61.36313 * 13 12 11 15 15 H 1.08999 * 109.52436 * 58.60169 * 14 13 12 16 16 N 1.46495 * 109.50107 * 178.68599 * 14 13 12 17 17 C 1.36945 * 120.00028 * 59.84031 * 16 14 13 18 18 H 1.08000 * 119.99912 * 35.13173 * 17 16 14 19 19 C 1.38813 * 119.99928 * 215.13783 * 17 16 14 20 20 N 1.31622 * 119.99973 * 22.19371 * 19 17 16 21 21 Si 1.86802 * 119.99849 * 202.20047 * 19 17 16 22 22 H 1.48498 * 109.46790 * 59.99804 * 21 19 17 23 23 H 1.48494 * 109.46980 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46995 * 299.99784 * 21 19 17 25 25 C 1.46500 * 120.00117 * 239.83880 * 16 14 13 26 26 C 1.52991 * 109.47186 * 275.33904 * 25 16 14 27 27 O 1.42902 * 109.47261 * 65.00317 * 26 25 16 28 28 C 1.46930 * 120.63004 * 174.34939 * 10 8 7 29 29 C 1.38360 * 120.34706 * 270.30255 * 3 2 1 30 30 H 1.09007 * 109.47431 * 300.00650 * 1 2 3 31 31 H 1.09007 * 109.47298 * 60.00028 * 1 2 3 32 32 H 1.08993 * 109.47286 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47460 * 239.99892 * 2 1 3 34 34 H 1.09003 * 109.47216 * 119.99225 * 2 1 3 35 35 H 1.07999 * 119.45970 * 0.02562 * 4 3 2 36 36 H 1.08002 * 119.71384 * 180.02562 * 6 5 4 37 37 H 1.08993 * 109.58428 * 353.42532 * 11 10 8 38 38 H 1.09001 * 109.58067 * 113.85003 * 11 10 8 39 39 H 1.09005 * 109.49736 * 65.31908 * 12 11 10 40 40 H 1.09002 * 109.49843 * 185.37996 * 12 11 10 41 41 H 1.09002 * 109.45908 * 301.34634 * 13 12 11 42 42 H 1.09000 * 109.46579 * 181.38897 * 13 12 11 43 43 H 0.97001 * 119.99936 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.46757 * 155.33860 * 25 16 14 45 45 H 1.09000 * 109.46820 * 35.34606 * 25 16 14 46 46 H 1.09009 * 109.47239 * 184.99963 * 26 25 16 47 47 H 1.08999 * 109.47707 * 305.00169 * 26 25 16 48 48 H 0.96698 * 114.00141 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.58481 * 6.58069 * 28 10 8 50 50 H 1.08996 * 109.70445 * 246.22118 * 28 10 8 51 51 H 1.08000 * 120.85464 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2654 2.0799 1.1939 5 7 2.7046 3.3238 1.2107 6 6 2.9412 3.9929 0.1013 7 6 2.7313 3.3993 -1.1438 8 6 2.9964 4.1508 -2.3890 9 8 3.4638 3.5804 -3.3553 10 7 2.7201 5.4684 -2.4528 11 6 2.0417 6.1457 -1.3393 12 6 0.8091 6.8748 -1.8832 13 6 1.2330 7.8063 -3.0210 14 6 1.8465 6.9824 -4.1555 15 1 1.1191 6.2521 -4.5098 16 7 2.2233 7.8715 -5.2571 17 6 3.1300 8.8759 -5.0469 18 1 3.9536 8.7259 -4.3645 19 6 2.9906 10.0870 -5.7108 20 7 1.8153 10.4487 -6.1803 21 14 4.4710 11.2033 -5.9382 22 1 5.5163 10.4876 -6.7130 23 1 4.0605 12.4262 -6.6738 24 1 5.0132 11.5832 -4.6090 25 6 1.6300 7.6860 -6.5838 26 6 2.4215 6.6264 -7.3528 27 8 2.2867 5.3631 -6.6985 28 6 3.0909 6.2546 -3.6374 29 6 2.2594 2.0820 -1.1940 30 1 -0.3634 0.5140 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.0847 1.5678 2.1274 36 1 3.3008 5.0098 0.1558 37 1 1.7330 5.4094 -0.5974 38 1 2.7202 6.8660 -0.8821 39 1 0.0912 6.1455 -2.2585 40 1 0.3507 7.4593 -1.0855 41 1 1.9695 8.5197 -2.6510 42 1 0.3615 8.3447 -3.3935 43 1 1.7178 11.2951 -6.6439 44 1 1.6594 8.6290 -7.1299 45 1 0.5954 7.3603 -6.4767 46 1 2.0360 6.5518 -8.3697 47 1 3.4737 6.9095 -7.3829 48 1 2.7635 4.6425 -7.1326 49 1 3.4744 5.5900 -4.4116 50 1 3.8558 6.9836 -3.3699 51 1 2.0817 1.5930 -2.1404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264076215.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:39 Heat of formation + Delta-G solvation = -26.308704 kcal Electronic energy + Delta-G solvation = -31888.850817 eV Core-core repulsion = 27788.863206 eV Total energy + Delta-G solvation = -4099.987611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.93754 -39.31870 -37.41003 -36.22444 -35.13241 -34.61176 -32.68046 -31.92466 -31.27265 -30.23859 -29.40578 -27.20381 -25.75514 -24.68325 -24.27891 -23.67371 -22.16997 -22.03118 -20.73296 -19.82106 -18.90387 -17.40730 -17.12276 -16.77107 -16.51315 -16.23508 -15.64146 -15.20972 -14.74250 -14.53202 -14.36853 -14.20205 -14.07350 -13.73128 -13.70094 -13.45433 -13.29280 -13.08383 -12.95337 -12.88331 -12.56895 -12.42165 -12.29835 -11.90789 -11.80896 -11.42885 -11.35224 -11.16215 -10.83046 -10.74049 -10.54280 -10.38364 -10.22478 -10.15150 -9.96417 -9.93335 -9.85250 -9.54764 -9.42384 -9.10021 -9.05729 -8.54736 -8.23708 -6.60170 -5.84150 -3.36425 0.58965 0.99528 2.86446 3.18783 3.34031 3.40531 3.43268 3.62768 4.12312 4.39914 4.44611 4.47379 4.66176 4.71257 4.75607 4.99860 5.02020 5.10425 5.20326 5.22175 5.27401 5.31431 5.44191 5.44497 5.54339 5.55741 5.60997 5.77180 5.85532 5.87123 5.95231 6.00392 6.07137 6.12840 6.20961 6.30907 6.36968 6.40627 6.44216 6.58182 6.64026 6.77316 6.87515 7.06353 7.16387 7.27665 7.56924 7.65568 7.69983 7.78212 8.35451 8.40792 8.46991 9.15751 9.79122 10.38316 11.17816 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002855 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.818997 B = 9805.483788 C =10445.909131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.142 4.142 4 C 0.114 3.886 5 N -0.484 5.484 6 C 0.122 3.878 7 C -0.168 4.168 8 C 0.557 3.443 9 O -0.534 6.534 10 N -0.594 5.594 11 C 0.096 3.904 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.177 3.823 15 H 0.056 0.944 16 N -0.571 5.571 17 C -0.255 4.255 18 H 0.061 0.939 19 C 0.010 3.990 20 N -0.889 5.889 21 Si 0.895 3.105 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.152 3.848 26 C 0.052 3.948 27 O -0.566 6.566 28 C 0.105 3.895 29 C -0.023 4.023 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.255 0.745 44 H 0.109 0.891 45 H 0.027 0.973 46 H 0.021 0.979 47 H 0.040 0.960 48 H 0.358 0.642 49 H 0.094 0.906 50 H 0.067 0.933 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 -16.219 11.476 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.143 4.143 4 C -0.043 4.043 5 N -0.192 5.192 6 C -0.036 4.036 7 C -0.174 4.174 8 C 0.343 3.657 9 O -0.412 6.412 10 N -0.326 5.326 11 C -0.027 4.027 12 C -0.171 4.171 13 C -0.164 4.164 14 C 0.069 3.931 15 H 0.075 0.925 16 N -0.290 5.290 17 C -0.385 4.385 18 H 0.079 0.921 19 C -0.190 4.190 20 N -0.532 5.532 21 Si 0.724 3.276 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.025 3.975 26 C -0.027 4.027 27 O -0.369 6.369 28 C -0.018 4.018 29 C -0.050 4.050 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.174 0.826 36 H 0.183 0.817 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.127 0.873 45 H 0.046 0.954 46 H 0.040 0.960 47 H 0.058 0.942 48 H 0.202 0.798 49 H 0.112 0.888 50 H 0.085 0.915 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.586 -15.527 12.058 19.828 hybrid contribution 0.980 0.115 -1.405 1.717 sum -1.605 -15.412 10.652 18.804 Atomic orbital electron populations 1.21776 0.94359 1.02037 1.02455 1.20480 0.96378 0.91424 1.03441 1.20882 1.01541 0.98139 0.93787 1.22820 0.93533 0.90470 0.97510 1.67740 1.12092 1.08481 1.30844 1.23228 0.94202 0.99555 0.86623 1.21107 1.04602 0.96190 0.95457 1.18039 0.78985 0.81881 0.86756 1.90775 1.45318 1.68196 1.36907 1.48132 1.57312 1.07718 1.19473 1.22162 0.94945 0.96677 0.88951 1.21957 0.96537 0.99168 0.99462 1.21974 1.01421 0.97899 0.95086 1.20500 0.92855 0.91367 0.88385 0.92541 1.43676 1.49461 1.32562 1.03303 1.18960 1.02480 0.90948 1.26084 0.92119 1.25093 0.95852 0.96175 1.01839 1.69985 1.20897 1.21787 1.40520 0.86496 0.83043 0.79876 0.78151 1.20996 1.21679 1.20749 1.21067 0.92652 0.96631 0.87144 1.23193 1.00460 0.84845 0.94233 1.86599 1.75505 1.18760 1.56045 1.22355 0.99513 0.94214 0.85689 1.21556 0.92400 0.92180 0.98847 0.92430 0.92369 0.92064 0.90537 0.90484 0.82593 0.81713 0.90037 0.90969 0.92262 0.91358 0.91444 0.91950 0.93477 0.87324 0.95440 0.96035 0.94199 0.79828 0.88797 0.91513 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.15 0.37 -0.57 16 2 C -0.08 -0.53 6.08 -27.88 -0.17 -0.70 16 3 C -0.14 -1.34 5.15 -104.53 -0.54 -1.88 16 4 C 0.11 1.10 10.85 -17.47 -0.19 0.91 16 5 N -0.48 -5.70 10.35 -12.91 -0.13 -5.83 16 6 C 0.12 1.48 8.55 -17.13 -0.15 1.33 16 7 C -0.17 -2.28 5.25 -104.82 -0.55 -2.83 16 8 C 0.56 9.37 7.38 -12.33 -0.09 9.28 16 9 O -0.53 -10.77 16.33 5.32 0.09 -10.68 16 10 N -0.59 -9.81 2.97 -173.88 -0.52 -10.33 16 11 C 0.10 1.29 4.82 -3.71 -0.02 1.28 16 12 C -0.13 -1.94 6.08 -26.62 -0.16 -2.10 16 13 C -0.12 -2.37 5.11 -26.69 -0.14 -2.50 16 14 C 0.18 3.70 2.15 -67.81 -0.15 3.55 16 15 H 0.06 1.26 7.61 -51.93 -0.40 0.86 16 16 N -0.57 -13.55 2.38 -165.53 -0.39 -13.94 16 17 C -0.26 -6.53 8.25 -15.06 -0.12 -6.66 16 18 H 0.06 1.56 6.74 -52.49 -0.35 1.21 16 19 C 0.01 0.27 4.91 -17.43 -0.09 0.18 16 20 N -0.89 -24.36 11.43 55.49 0.63 -23.72 16 21 Si 0.89 20.85 29.61 -169.99 -5.03 15.82 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.15 3.52 5.62 -4.05 -0.02 3.50 16 26 C 0.05 1.06 7.39 37.15 0.27 1.33 16 27 O -0.57 -10.98 12.17 -35.23 -0.43 -11.41 16 28 C 0.10 2.06 5.78 -3.71 -0.02 2.04 16 29 C -0.02 -0.28 9.45 -38.87 -0.37 -0.65 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.17 1.82 6.22 -52.49 -0.33 1.49 16 37 H 0.08 0.96 4.54 -51.93 -0.24 0.73 16 38 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.37 7.70 -51.93 -0.40 0.97 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.11 2.78 5.43 -51.93 -0.28 2.50 16 45 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 46 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.36 5.42 9.12 45.56 0.42 5.84 16 49 H 0.09 2.06 6.43 -51.93 -0.33 1.72 16 50 H 0.07 1.37 6.79 -51.93 -0.35 1.02 16 51 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 401.69 15.07 6.05 6.05 Total: -1.00 -30.77 401.69 -9.16 -39.93 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.30 Total: 8.60 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -2.13 Total: 5.52 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.41 Total: -53.82 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.34 Total: -22.09 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.77 -9.16 -39.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264076215.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.625 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds