Wall clock time and date at job start Wed Apr 1 2020 04:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47290 * 2 1 4 4 C 1.38350 * 120.35154 * 89.99950 * 3 2 1 5 5 N 1.31927 * 121.08131 * 180.02562 * 4 3 2 6 6 C 1.31694 * 121.87611 * 359.97438 * 5 4 3 7 7 C 1.39521 * 120.57126 * 0.02562 * 6 5 4 8 8 C 1.47839 * 120.56163 * 179.97438 * 7 6 5 9 9 O 1.21549 * 119.99921 * 143.18184 * 8 7 6 10 10 N 1.34774 * 119.99998 * 323.19370 * 8 7 6 11 11 C 1.46929 * 120.63136 * 354.32195 * 10 8 7 12 12 C 1.53190 * 108.77353 * 233.63222 * 11 10 8 13 13 C 1.53032 * 109.31852 * 305.36775 * 12 11 10 14 14 C 1.53040 * 109.54056 * 61.36313 * 13 12 11 15 15 H 1.08999 * 109.52436 * 58.60169 * 14 13 12 16 16 N 1.46495 * 109.50107 * 178.68599 * 14 13 12 17 17 C 1.36945 * 120.00028 * 59.84031 * 16 14 13 18 18 H 1.08000 * 119.99912 * 35.13173 * 17 16 14 19 19 C 1.38813 * 119.99928 * 215.13783 * 17 16 14 20 20 N 1.31622 * 119.99973 * 22.19371 * 19 17 16 21 21 Si 1.86802 * 119.99849 * 202.20047 * 19 17 16 22 22 H 1.48498 * 109.46790 * 59.99804 * 21 19 17 23 23 H 1.48494 * 109.46980 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46995 * 299.99784 * 21 19 17 25 25 C 1.46500 * 120.00117 * 239.83880 * 16 14 13 26 26 C 1.52991 * 109.47186 * 275.33904 * 25 16 14 27 27 O 1.42902 * 109.47261 * 65.00317 * 26 25 16 28 28 C 1.46930 * 120.63004 * 174.34939 * 10 8 7 29 29 C 1.38360 * 120.34706 * 270.30255 * 3 2 1 30 30 H 1.09007 * 109.47431 * 300.00650 * 1 2 3 31 31 H 1.09007 * 109.47298 * 60.00028 * 1 2 3 32 32 H 1.08993 * 109.47286 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47460 * 239.99892 * 2 1 3 34 34 H 1.09003 * 109.47216 * 119.99225 * 2 1 3 35 35 H 1.07999 * 119.45970 * 0.02562 * 4 3 2 36 36 H 1.08002 * 119.71384 * 180.02562 * 6 5 4 37 37 H 1.08993 * 109.58428 * 353.42532 * 11 10 8 38 38 H 1.09001 * 109.58067 * 113.85003 * 11 10 8 39 39 H 1.09005 * 109.49736 * 65.31908 * 12 11 10 40 40 H 1.09002 * 109.49843 * 185.37996 * 12 11 10 41 41 H 1.09002 * 109.45908 * 301.34634 * 13 12 11 42 42 H 1.09000 * 109.46579 * 181.38897 * 13 12 11 43 43 H 0.97001 * 119.99936 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.46757 * 155.33860 * 25 16 14 45 45 H 1.09000 * 109.46820 * 35.34606 * 25 16 14 46 46 H 1.09009 * 109.47239 * 184.99963 * 26 25 16 47 47 H 1.08999 * 109.47707 * 305.00169 * 26 25 16 48 48 H 0.96698 * 114.00141 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.58481 * 6.58069 * 28 10 8 50 50 H 1.08996 * 109.70445 * 246.22118 * 28 10 8 51 51 H 1.08000 * 120.85464 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2654 2.0799 1.1939 5 7 2.7046 3.3238 1.2107 6 6 2.9412 3.9929 0.1013 7 6 2.7313 3.3993 -1.1438 8 6 2.9964 4.1508 -2.3890 9 8 3.4638 3.5804 -3.3553 10 7 2.7201 5.4684 -2.4528 11 6 2.0417 6.1457 -1.3393 12 6 0.8091 6.8748 -1.8832 13 6 1.2330 7.8063 -3.0210 14 6 1.8465 6.9824 -4.1555 15 1 1.1191 6.2521 -4.5098 16 7 2.2233 7.8715 -5.2571 17 6 3.1300 8.8759 -5.0469 18 1 3.9536 8.7259 -4.3645 19 6 2.9906 10.0870 -5.7108 20 7 1.8153 10.4487 -6.1803 21 14 4.4710 11.2033 -5.9382 22 1 5.5163 10.4876 -6.7130 23 1 4.0605 12.4262 -6.6738 24 1 5.0132 11.5832 -4.6090 25 6 1.6300 7.6860 -6.5838 26 6 2.4215 6.6264 -7.3528 27 8 2.2867 5.3631 -6.6985 28 6 3.0909 6.2546 -3.6374 29 6 2.2594 2.0820 -1.1940 30 1 -0.3634 0.5140 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.0847 1.5678 2.1274 36 1 3.3008 5.0098 0.1558 37 1 1.7330 5.4094 -0.5974 38 1 2.7202 6.8660 -0.8821 39 1 0.0912 6.1455 -2.2585 40 1 0.3507 7.4593 -1.0855 41 1 1.9695 8.5197 -2.6510 42 1 0.3615 8.3447 -3.3935 43 1 1.7178 11.2951 -6.6439 44 1 1.6594 8.6290 -7.1299 45 1 0.5954 7.3603 -6.4767 46 1 2.0360 6.5518 -8.3697 47 1 3.4737 6.9095 -7.3829 48 1 2.7635 4.6425 -7.1326 49 1 3.4744 5.5900 -4.4116 50 1 3.8558 6.9836 -3.3699 51 1 2.0817 1.5930 -2.1404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264076215.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:38 Heat of formation + Delta-G solvation = -46.312008 kcal Electronic energy + Delta-G solvation = -31889.718225 eV Core-core repulsion = 27788.863206 eV Total energy + Delta-G solvation = -4100.855019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.98756 -40.51968 -38.98531 -37.77493 -36.41689 -35.69927 -34.07833 -33.15009 -32.93492 -31.43666 -30.56586 -28.96845 -27.02268 -26.13299 -25.32354 -24.85570 -23.59468 -22.95982 -22.27891 -21.42448 -20.20795 -18.59775 -18.36252 -18.07233 -17.99090 -17.47889 -17.02418 -16.79247 -16.29435 -15.93454 -15.59952 -15.46887 -15.22588 -15.01109 -14.75520 -14.64773 -14.63917 -14.42926 -14.16895 -14.04483 -13.84065 -13.60874 -13.48397 -13.23298 -13.10601 -12.96809 -12.67385 -12.44190 -12.37208 -12.18321 -12.00020 -11.92866 -11.86053 -11.68833 -11.64381 -11.25127 -11.20046 -10.85748 -10.72555 -10.51730 -10.44063 -9.93804 -9.69248 -8.53881 -7.82956 -5.38612 -0.32548 0.13022 1.46905 1.50408 1.55879 1.63718 1.91622 2.52522 2.70073 3.22263 3.24743 3.49309 3.53346 3.71852 3.73425 3.78116 3.90166 4.02574 4.05505 4.08758 4.15270 4.31694 4.40129 4.44899 4.50416 4.53330 4.56577 4.60272 4.60927 4.74872 4.81781 4.84084 4.89455 4.94336 4.95432 4.98510 5.05977 5.13601 5.19435 5.26411 5.33990 5.39382 5.42591 5.51718 5.58302 5.60300 5.65459 5.75362 6.37585 6.46967 6.80522 7.00744 7.03776 7.17658 7.86095 8.42307 9.16189 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002855 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.818997 B = 9805.483788 C =10445.909131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.131 4.131 4 C 0.120 3.880 5 N -0.495 5.495 6 C 0.122 3.878 7 C -0.186 4.186 8 C 0.556 3.444 9 O -0.577 6.577 10 N -0.595 5.595 11 C 0.096 3.904 12 C -0.123 4.123 13 C -0.115 4.115 14 C 0.181 3.819 15 H 0.039 0.961 16 N -0.584 5.584 17 C -0.254 4.254 18 H 0.057 0.943 19 C -0.033 4.033 20 N -0.917 5.917 21 Si 0.952 3.048 22 H -0.283 1.283 23 H -0.294 1.294 24 H -0.276 1.276 25 C 0.150 3.850 26 C 0.067 3.933 27 O -0.578 6.578 28 C 0.123 3.877 29 C -0.034 4.034 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.192 0.808 36 H 0.174 0.826 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.037 0.963 43 H 0.252 0.748 44 H 0.086 0.914 45 H 0.017 0.983 46 H 0.048 0.952 47 H 0.028 0.972 48 H 0.378 0.622 49 H 0.068 0.932 50 H 0.056 0.944 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.547 -18.032 14.195 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.133 4.133 4 C -0.036 4.036 5 N -0.203 5.203 6 C -0.036 4.036 7 C -0.191 4.191 8 C 0.345 3.655 9 O -0.458 6.458 10 N -0.326 5.326 11 C -0.025 4.025 12 C -0.161 4.161 13 C -0.155 4.155 14 C 0.073 3.927 15 H 0.058 0.942 16 N -0.304 5.304 17 C -0.384 4.384 18 H 0.075 0.925 19 C -0.230 4.230 20 N -0.562 5.562 21 Si 0.780 3.220 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.202 1.202 25 C 0.024 3.976 26 C -0.013 4.013 27 O -0.384 6.384 28 C -0.001 4.001 29 C -0.060 4.060 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.209 0.791 36 H 0.191 0.809 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.066 0.934 47 H 0.047 0.953 48 H 0.225 0.775 49 H 0.087 0.913 50 H 0.074 0.926 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.589 -17.362 14.807 22.965 hybrid contribution 0.929 0.524 -2.201 2.446 sum -1.660 -16.838 12.606 21.100 Atomic orbital electron populations 1.21772 0.93939 1.02867 1.01937 1.20570 0.96570 0.89624 1.04756 1.21158 1.00148 0.99271 0.92698 1.23445 0.91512 0.89770 0.98903 1.67827 1.12634 1.09514 1.30283 1.23288 0.94103 1.00047 0.86117 1.20840 1.07239 0.96794 0.94209 1.18567 0.77810 0.81691 0.87444 1.90740 1.47198 1.69006 1.38820 1.48141 1.57468 1.07835 1.19189 1.22382 0.94460 0.97389 0.88274 1.21895 0.97159 0.98528 0.98545 1.21812 0.99734 0.98010 0.95910 1.20510 0.93048 0.90825 0.88297 0.94230 1.43846 1.49502 1.32714 1.04319 1.19095 1.02511 0.91237 1.25576 0.92499 1.25682 0.97750 0.97414 1.02195 1.70105 1.22392 1.22060 1.41595 0.85596 0.80295 0.78082 0.78008 1.20959 1.22020 1.20170 1.20956 0.92719 0.96654 0.87307 1.22861 0.99136 0.84452 0.94856 1.86544 1.76008 1.19076 1.56745 1.21855 0.98316 0.93480 0.86460 1.21676 0.92697 0.91785 0.99851 0.91985 0.93856 0.90626 0.90436 0.88029 0.79082 0.80878 0.87480 0.89303 0.92361 0.88326 0.92825 0.94432 0.93899 0.89613 0.96413 0.93366 0.95345 0.77459 0.91332 0.92558 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 71.98 0.71 -0.72 16 2 C -0.08 -0.78 6.08 29.85 0.18 -0.60 16 3 C -0.13 -2.11 5.15 -19.81 -0.10 -2.21 16 4 C 0.12 1.87 10.85 84.71 0.92 2.79 16 5 N -0.49 -10.13 10.35 -194.76 -2.01 -12.14 16 6 C 0.12 2.71 8.55 85.02 0.73 3.43 16 7 C -0.19 -4.84 5.25 -19.99 -0.11 -4.95 16 8 C 0.56 18.84 7.38 86.78 0.64 19.48 16 9 O -0.58 -23.99 16.33 -3.87 -0.06 -24.05 16 10 N -0.60 -19.65 2.97 -822.32 -2.44 -22.10 16 11 C 0.10 2.45 4.82 86.36 0.42 2.87 16 12 C -0.12 -3.44 6.08 30.67 0.19 -3.25 16 13 C -0.12 -4.46 5.11 30.62 0.16 -4.30 16 14 C 0.18 7.80 2.15 45.07 0.10 7.90 16 15 H 0.04 1.83 7.61 -2.39 -0.02 1.81 16 16 N -0.58 -28.72 2.38 -677.61 -1.61 -30.33 16 17 C -0.25 -13.35 8.25 84.03 0.69 -12.65 16 18 H 0.06 3.00 6.74 -2.91 -0.02 2.98 16 19 C -0.03 -1.78 4.91 84.86 0.42 -1.36 16 20 N -0.92 -51.67 11.43 21.65 0.25 -51.42 16 21 Si 0.95 43.50 29.61 68.60 2.03 45.53 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 C 0.15 7.23 5.62 86.38 0.49 7.71 16 26 C 0.07 2.72 7.39 71.98 0.53 3.25 16 27 O -0.58 -22.70 12.17 -148.98 -1.81 -24.51 16 28 C 0.12 4.97 5.78 86.36 0.50 5.47 16 29 C -0.03 -0.76 9.45 22.73 0.21 -0.54 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 34 H 0.10 0.58 8.09 -2.39 -0.02 0.56 16 35 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.17 3.43 6.22 -2.91 -0.02 3.41 16 37 H 0.11 2.26 4.54 -2.39 -0.01 2.25 16 38 H 0.09 2.02 8.08 -2.39 -0.02 2.00 16 39 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.05 2.21 7.70 -2.39 -0.02 2.19 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 44 H 0.09 4.57 5.43 -2.38 -0.01 4.56 16 45 H 0.02 0.86 8.03 -2.39 -0.02 0.84 16 46 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.38 11.40 9.12 -74.06 -0.68 10.73 16 49 H 0.07 3.13 6.43 -2.39 -0.02 3.11 16 50 H 0.06 2.38 6.79 -2.39 -0.02 2.36 16 51 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -69.27 401.69 1.27 -68.00 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.27 Total: 28.70 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 6.67 Total: 22.33 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -5.82 Total: -115.99 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -1.88 Total: -48.57 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -69.27 1.27 -68.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264076215.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.687 kcal (2) G-P(sol) polarization free energy of solvation -69.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds