Wall clock time and date at job start Wed Apr 1 2020 04:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46729 * 2 1 4 4 C 1.38017 * 119.51097 * 125.02412 * 3 2 1 5 5 C 1.39924 * 119.13211 * 179.97438 * 4 3 2 6 6 C 1.48163 * 120.89421 * 179.97438 * 5 4 3 7 7 O 1.21515 * 119.99637 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00446 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00617 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47521 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47243 * 180.02562 * 10 9 8 12 12 C 1.52994 * 109.47095 * 177.30269 * 11 10 9 13 13 H 1.08995 * 109.87524 * 306.76749 * 12 11 10 14 14 C 1.54327 * 109.88317 * 185.74900 * 12 11 10 15 15 C 1.55151 * 102.94784 * 218.39132 * 14 12 11 16 16 C 1.54908 * 101.57924 * 35.50408 * 15 14 12 17 17 N 1.47026 * 109.88491 * 67.78856 * 12 11 10 18 18 C 1.36944 * 125.64357 * 298.31179 * 17 12 11 19 19 H 1.08001 * 119.99653 * 343.49274 * 18 17 12 20 20 C 1.38806 * 119.99775 * 163.48919 * 18 17 12 21 21 N 1.31621 * 119.99622 * 161.44808 * 20 18 17 22 22 Si 1.86798 * 120.00306 * 341.45754 * 20 18 17 23 23 H 1.48500 * 109.47357 * 84.79595 * 22 20 18 24 24 H 1.48504 * 109.47025 * 204.79741 * 22 20 18 25 25 H 1.48504 * 109.47057 * 324.79005 * 22 20 18 26 26 C 1.39611 * 118.21625 * 359.73243 * 5 4 3 27 27 C 1.38852 * 118.94842 * 0.52655 * 26 5 4 28 28 O 1.35683 * 119.62347 * 179.73799 * 27 26 5 29 29 N 1.31880 * 119.51371 * 305.00042 * 3 2 1 30 30 H 1.08998 * 109.47136 * 60.00076 * 1 2 3 31 31 H 1.09002 * 109.46891 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47212 * 299.99774 * 1 2 3 33 33 H 1.08999 * 109.46709 * 240.00080 * 2 1 3 34 34 H 1.08998 * 109.47136 * 119.99924 * 2 1 3 35 35 H 1.07997 * 120.43737 * 359.97438 * 4 3 2 36 36 H 0.97001 * 120.00011 * 0.02562 * 8 6 5 37 37 H 1.08999 * 109.46812 * 300.00416 * 9 8 6 38 38 H 1.09007 * 109.46502 * 60.00084 * 9 8 6 39 39 H 1.09011 * 109.46703 * 300.00365 * 10 9 8 40 40 H 1.09000 * 109.47392 * 59.99753 * 10 9 8 41 41 H 1.09004 * 109.46850 * 297.30447 * 11 10 9 42 42 H 1.08997 * 109.47078 * 57.30514 * 11 10 9 43 43 H 1.09002 * 110.71841 * 336.75959 * 14 12 11 44 44 H 1.09001 * 110.71776 * 100.02735 * 14 12 11 45 45 H 1.08996 * 111.01085 * 153.57560 * 15 14 12 46 46 H 1.09001 * 111.00626 * 277.39516 * 15 14 12 47 47 H 1.09002 * 110.37305 * 81.82974 * 16 15 14 48 48 H 1.09004 * 110.36802 * 204.15236 * 16 15 14 49 49 H 0.97003 * 119.99922 * 180.02562 * 21 20 18 50 50 H 1.08004 * 120.52507 * 180.28367 * 26 5 4 51 51 H 0.96697 * 114.00132 * 269.72705 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9088 1.8321 0.9836 5 6 3.3706 3.1529 0.9757 6 6 4.3117 3.6361 2.0131 7 8 4.6933 2.8816 2.8859 8 7 4.7454 4.9118 1.9880 9 6 5.6765 5.3894 3.0134 10 6 6.0068 6.8611 2.7568 11 6 6.9796 7.3596 3.8273 12 6 7.3623 8.8112 3.5324 13 1 7.7283 8.8974 2.5094 14 6 8.4517 9.2780 4.5208 15 6 8.0448 10.7451 4.8193 16 6 6.4988 10.6496 4.7973 17 7 6.1945 9.6844 3.7209 18 6 5.0226 9.6131 3.0160 19 1 4.9845 9.0657 2.0857 20 6 3.8838 10.2443 3.4971 21 7 2.8785 10.4959 2.6857 22 14 3.7782 10.7368 5.2959 23 1 4.4243 12.0604 5.4855 24 1 2.3527 10.8188 5.7037 25 1 4.4737 9.7227 6.1284 26 6 2.9246 4.0020 -0.0389 27 6 2.0381 3.5087 -0.9869 28 8 1.5918 4.3235 -1.9758 29 7 1.6282 2.2528 -0.9401 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.2341 1.1435 1.7494 36 1 4.4411 5.5139 1.2910 37 1 5.2178 5.2864 3.9968 38 1 6.5922 4.7992 2.9759 39 1 6.4652 6.9644 1.7732 40 1 5.0910 7.4510 2.7945 41 1 6.5038 7.3009 4.8062 42 1 7.8758 6.7392 3.8211 43 1 8.4291 8.6786 5.4309 44 1 9.4368 9.2380 4.0559 45 1 8.4029 11.0582 5.8000 46 1 8.4063 11.4170 4.0409 47 1 6.1277 10.2821 5.7541 48 1 6.0619 11.6215 4.5681 49 1 2.0828 10.9374 3.0218 50 1 3.2608 5.0274 -0.0833 51 1 0.7804 4.8012 -1.7557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266226654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:25 Heat of formation + Delta-G solvation = -26.593814 kcal Electronic energy + Delta-G solvation = -30227.044379 eV Core-core repulsion = 26127.044405 eV Total energy + Delta-G solvation = -4099.999974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.04313 -39.41191 -38.22319 -37.48436 -35.45561 -34.30695 -32.82171 -32.64284 -32.18984 -29.96121 -29.72002 -28.58990 -25.71615 -24.85905 -24.28548 -23.35578 -22.49145 -21.65446 -20.67412 -20.20668 -19.25003 -18.86378 -17.34442 -17.18566 -16.81592 -16.03197 -15.94541 -15.76589 -15.41260 -15.31864 -15.04546 -14.59035 -14.51715 -14.14825 -13.88465 -13.34574 -13.27959 -13.08103 -12.84383 -12.68683 -12.53043 -12.19586 -12.13705 -12.01046 -11.99147 -11.74161 -11.37025 -11.34330 -11.19667 -11.04509 -10.88524 -10.47695 -10.44186 -10.36571 -10.11590 -10.02842 -9.90044 -9.74634 -9.61640 -9.26549 -9.09690 -9.02066 -8.75553 -7.07206 -5.97902 -3.27686 0.44919 0.69099 2.68285 3.02316 3.25340 3.31003 3.44175 3.45893 3.55070 4.13283 4.38651 4.50310 4.68008 4.70230 4.86818 4.89627 4.95792 5.02258 5.14104 5.18177 5.22906 5.29462 5.42417 5.44730 5.48800 5.52877 5.58565 5.59957 5.72716 5.75203 5.83508 5.92360 5.97071 5.97829 6.08578 6.10238 6.16024 6.21737 6.25712 6.33977 6.41374 6.52310 6.61142 6.65796 6.78362 6.99226 7.03672 7.22071 7.45237 7.61188 7.67479 8.08376 8.25544 8.77706 9.65167 10.16881 11.17659 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.002352 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.018508 B =11904.397602 C =12868.762292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C 0.149 3.851 4 C -0.126 4.126 5 C -0.065 4.065 6 C 0.555 3.445 7 O -0.534 6.534 8 N -0.712 5.712 9 C 0.121 3.879 10 C -0.144 4.144 11 C -0.116 4.116 12 C 0.161 3.839 13 H 0.042 0.958 14 C -0.127 4.127 15 C -0.132 4.132 16 C 0.101 3.899 17 N -0.605 5.605 18 C -0.234 4.234 19 H 0.099 0.901 20 C 0.017 3.983 21 N -0.914 5.914 22 Si 0.888 3.112 23 H -0.288 1.288 24 H -0.307 1.307 25 H -0.274 1.274 26 C -0.159 4.159 27 C 0.316 3.684 28 O -0.479 6.479 29 N -0.487 5.487 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.151 0.849 36 H 0.404 0.596 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.114 0.886 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.030 0.970 48 H 0.058 0.942 49 H 0.262 0.738 50 H 0.149 0.851 51 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -15.098 -3.788 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C 0.012 3.988 4 C -0.147 4.147 5 C -0.076 4.076 6 C 0.340 3.660 7 O -0.412 6.412 8 N -0.363 5.363 9 C -0.002 4.002 10 C -0.181 4.181 11 C -0.156 4.156 12 C 0.055 3.945 13 H 0.060 0.940 14 C -0.165 4.165 15 C -0.170 4.170 16 C -0.024 4.024 17 N -0.331 5.331 18 C -0.361 4.361 19 H 0.116 0.884 20 C -0.181 4.181 21 N -0.558 5.558 22 Si 0.720 3.280 23 H -0.215 1.215 24 H -0.235 1.235 25 H -0.200 1.200 26 C -0.181 4.181 27 C 0.137 3.863 28 O -0.286 6.286 29 N -0.207 5.207 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.169 0.831 36 H 0.240 0.760 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.047 0.953 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.167 0.833 51 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.346 -15.968 -4.178 16.561 hybrid contribution -0.216 1.281 1.482 1.971 sum 1.130 -14.687 -2.696 14.975 Atomic orbital electron populations 1.21685 0.93868 1.01900 1.02782 1.20539 0.97249 0.89703 1.03602 1.20986 0.92800 0.95899 0.89143 1.22117 0.96990 0.95544 1.00061 1.20333 0.97391 0.94546 0.95298 1.18085 0.80860 0.82468 0.84546 1.90768 1.57899 1.55481 1.37018 1.46014 1.47291 1.11295 1.31676 1.21575 0.91812 0.96047 0.90781 1.22180 1.03908 0.93004 0.99047 1.21881 0.97490 0.97409 0.98784 1.20978 0.87734 0.89218 0.96610 0.93990 1.22606 0.98009 0.96489 0.99411 1.22706 0.97098 0.96574 1.00626 1.22126 0.93397 0.94508 0.92377 1.44945 1.13566 1.33349 1.41237 1.18632 0.84440 1.31234 1.01747 0.88409 1.24932 0.95814 0.99682 0.97669 1.69787 1.07453 1.44605 1.34002 0.86995 0.75052 0.78441 0.87561 1.21520 1.23492 1.20011 1.22383 1.00087 1.01719 0.93891 1.18933 0.93173 0.87206 0.87035 1.84792 1.47060 1.58038 1.38722 1.66769 1.25750 1.04021 1.24168 0.91533 0.92150 0.92748 0.89646 0.89782 0.83129 0.75993 0.91460 0.92013 0.92369 0.86805 0.92140 0.93313 0.91700 0.91753 0.91954 0.91440 0.95274 0.92415 0.92809 0.83335 0.73708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.77 37.16 0.36 -0.72 16 2 C -0.07 -0.57 6.33 -27.88 -0.18 -0.75 16 3 C 0.15 1.61 6.17 -82.65 -0.51 1.10 16 4 C -0.13 -1.45 9.27 -39.03 -0.36 -1.81 16 5 C -0.06 -0.82 5.91 -104.68 -0.62 -1.44 16 6 C 0.55 8.16 7.80 -12.19 -0.10 8.06 16 7 O -0.53 -9.33 16.44 5.35 0.09 -9.24 16 8 N -0.71 -9.89 5.51 -61.15 -0.34 -10.23 16 9 C 0.12 1.79 5.67 -4.04 -0.02 1.76 16 10 C -0.14 -2.31 4.64 -26.74 -0.12 -2.44 16 11 C -0.12 -1.87 4.72 -26.74 -0.13 -2.00 16 12 C 0.16 2.89 3.22 -66.95 -0.22 2.67 16 13 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 14 C -0.13 -1.91 6.48 -24.90 -0.16 -2.07 16 15 C -0.13 -2.13 7.08 -24.59 -0.17 -2.30 16 16 C 0.10 2.10 4.67 -2.35 -0.01 2.09 16 17 N -0.61 -13.42 2.99 -162.31 -0.48 -13.90 16 18 C -0.23 -5.98 8.39 -15.06 -0.13 -6.10 16 19 H 0.10 2.58 6.63 -52.49 -0.35 2.23 16 20 C 0.02 0.47 5.47 -17.43 -0.10 0.37 16 21 N -0.91 -26.68 13.97 55.49 0.78 -25.91 16 22 Si 0.89 22.04 24.24 -169.99 -4.12 17.92 16 23 H -0.29 -6.99 6.43 56.52 0.36 -6.62 16 24 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 25 H -0.27 -6.69 6.21 56.52 0.35 -6.34 16 26 C -0.16 -1.84 9.55 -38.84 -0.37 -2.21 16 27 C 0.32 3.75 7.74 -17.17 -0.13 3.62 16 28 O -0.48 -5.06 13.56 -18.75 -0.25 -5.31 16 29 N -0.49 -5.92 9.87 -9.60 -0.09 -6.01 16 30 H 0.07 0.57 7.94 -51.93 -0.41 0.15 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 35 H 0.15 1.59 7.62 -52.49 -0.40 1.19 16 36 H 0.40 5.00 6.61 -40.82 -0.27 4.73 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 40 H 0.11 2.24 4.92 -51.93 -0.26 1.98 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.93 7.85 -51.93 -0.41 0.52 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.03 0.64 5.44 -51.93 -0.28 0.36 16 48 H 0.06 1.30 6.13 -51.93 -0.32 0.99 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.15 1.51 6.53 -52.48 -0.34 1.17 16 51 H 0.40 2.40 9.06 45.56 0.41 2.82 16 LS Contribution 401.82 15.07 6.06 6.06 Total: -1.00 -32.80 401.82 -8.66 -41.46 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.33 Total: 7.32 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.96 Total: -2.16 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.14 Total: -56.05 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.17 Total: -14.55 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.12 Total: 17.92 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.80 -8.66 -41.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266226654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.869 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds