Wall clock time and date at job start Wed Apr 1 2020 04:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47330 * 2 1 4 4 C 1.38361 * 120.26736 * 269.97547 * 3 2 1 5 5 N 1.31878 * 121.18411 * 180.02562 * 4 3 2 6 6 C 1.32243 * 121.79872 * 359.65365 * 5 4 3 7 7 O 1.35425 * 119.80012 * 180.31643 * 6 5 4 8 8 C 1.40280 * 120.39827 * 0.63028 * 6 5 4 9 9 C 1.47525 * 120.59618 * 179.67931 * 8 6 5 10 10 O 1.21593 * 119.99811 * 34.27699 * 9 8 6 11 11 N 1.34773 * 120.00153 * 214.27584 * 9 8 6 12 12 C 1.46926 * 120.62818 * 4.96163 * 11 9 8 13 13 C 1.53191 * 108.77051 * 233.60701 * 12 11 9 14 14 C 1.53048 * 109.31531 * 305.36646 * 13 12 11 15 15 C 1.53031 * 109.53770 * 61.36599 * 14 13 12 16 16 H 1.08997 * 109.49924 * 58.62212 * 15 14 13 17 17 C 1.53004 * 109.49826 * 178.68735 * 15 14 13 18 18 N 1.46496 * 109.47059 * 184.93197 * 17 15 14 19 19 C 1.46498 * 120.00403 * 269.99938 * 18 17 15 20 20 C 1.36940 * 119.99757 * 89.99959 * 18 17 15 21 21 H 1.08001 * 120.00188 * 3.32775 * 20 18 17 22 22 C 1.38813 * 119.99995 * 183.59736 * 20 18 17 23 23 N 1.31615 * 120.00059 * 325.49386 * 22 20 18 24 24 Si 1.86800 * 119.99795 * 145.49253 * 22 20 18 25 25 H 1.48496 * 109.47028 * 95.00535 * 24 22 20 26 26 H 1.48505 * 109.47033 * 215.00231 * 24 22 20 27 27 H 1.48500 * 109.47127 * 334.99917 * 24 22 20 28 28 C 1.46931 * 120.60452 * 184.97732 * 11 9 8 29 29 C 1.38329 * 120.27462 * 89.99905 * 3 2 1 30 30 H 1.08997 * 109.47662 * 300.00123 * 1 2 3 31 31 H 1.09007 * 109.47253 * 60.00517 * 1 2 3 32 32 H 1.09000 * 109.47112 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47595 * 239.99350 * 2 1 3 34 34 H 1.09006 * 109.47168 * 120.00261 * 2 1 3 35 35 H 1.07998 * 119.40782 * 0.02562 * 4 3 2 36 36 H 0.96700 * 114.00300 * 270.31483 * 7 6 5 37 37 H 1.08994 * 109.58582 * 113.82462 * 12 11 9 38 38 H 1.08998 * 109.70409 * 353.45945 * 12 11 9 39 39 H 1.09007 * 109.49887 * 185.41233 * 13 12 11 40 40 H 1.09000 * 109.50099 * 65.31536 * 13 12 11 41 41 H 1.09005 * 109.45486 * 301.34138 * 14 13 12 42 42 H 1.09000 * 109.46098 * 181.39017 * 14 13 12 43 43 H 1.08996 * 109.46918 * 64.93143 * 17 15 14 44 44 H 1.09001 * 109.46865 * 304.93570 * 17 15 14 45 45 H 1.09008 * 109.46862 * 264.90221 * 19 18 17 46 46 H 1.09003 * 109.47192 * 24.89516 * 19 18 17 47 47 H 1.08997 * 109.47465 * 144.89908 * 19 18 17 48 48 H 0.97000 * 120.00277 * 179.97438 * 23 22 20 49 49 H 1.09008 * 109.61770 * 6.62460 * 28 11 9 50 50 H 1.08998 * 109.56503 * 246.19705 * 28 11 9 51 51 H 1.08002 * 120.82279 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2653 2.0781 -1.1950 5 7 2.7054 3.3211 -1.2161 6 6 2.9373 3.9972 -0.1035 7 8 3.3828 5.2742 -0.1724 8 6 2.7308 3.3974 1.1477 9 6 2.9949 4.1453 2.3917 10 8 2.7846 5.3420 2.4378 11 7 3.4691 3.5021 3.4769 12 6 3.8304 2.0797 3.4056 13 6 3.0891 1.3266 4.5146 14 6 3.3910 1.9850 5.8628 15 6 2.8955 3.4328 5.8477 16 1 1.8246 3.4487 5.6455 17 6 3.1683 4.0802 7.2069 18 7 2.5894 5.4257 7.2319 19 6 3.3881 6.5750 6.7991 20 6 1.3016 5.6091 7.6599 21 1 0.7307 4.7701 8.0295 22 6 0.7280 6.8723 7.6134 23 7 1.4673 7.9392 7.8310 24 14 -1.0933 7.0580 7.2418 25 1 -1.8515 7.1488 8.5154 26 1 -1.3128 8.2924 6.4460 27 1 -1.5633 5.8804 6.4687 28 6 3.6340 4.2104 4.7536 29 6 2.2648 2.0783 1.1946 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 2.0835 1.5640 -2.1272 36 1 4.3463 5.3541 -0.1944 37 1 4.9058 1.9685 3.5442 38 1 3.5433 1.6758 2.4347 39 1 3.4211 0.2885 4.5342 40 1 2.0164 1.3623 4.3245 41 1 4.4663 1.9710 6.0410 42 1 2.8844 1.4361 6.6566 43 1 4.2441 4.1445 7.3693 44 1 2.7175 3.4759 7.9941 45 1 3.8523 7.0425 7.6675 46 1 4.1628 6.2400 6.1093 47 1 2.7436 7.2976 6.2985 48 1 1.0666 8.8220 7.7981 49 1 3.2153 5.2135 4.6723 50 1 4.6935 4.2734 5.0019 51 1 2.0904 1.5863 2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266469194.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:15 Heat of formation + Delta-G solvation = -0.052573 kcal Electronic energy + Delta-G solvation = -32061.894731 eV Core-core repulsion = 27963.045672 eV Total energy + Delta-G solvation = -4098.849060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.31062 -39.59214 -37.84585 -37.23834 -35.60830 -34.58749 -33.51045 -32.24271 -31.72050 -30.00916 -29.43148 -26.57848 -25.89784 -25.53222 -24.42873 -24.06841 -22.61371 -22.23532 -20.87297 -19.92870 -19.19879 -18.83957 -17.59866 -17.11059 -16.60682 -16.40009 -15.77715 -15.15927 -14.89211 -14.81115 -14.77053 -14.35548 -14.32076 -13.83600 -13.68991 -13.65128 -13.43485 -13.24960 -13.07353 -12.67322 -12.53040 -12.44164 -12.31486 -12.10332 -11.71027 -11.62624 -11.43138 -11.35849 -11.07990 -10.89777 -10.87158 -10.57496 -10.48911 -10.19321 -10.13199 -10.03514 -9.96025 -9.89173 -9.67476 -9.40891 -9.05600 -8.45992 -8.17610 -6.90947 -5.81024 -2.92449 0.40291 0.75061 2.75608 2.98477 3.27220 3.45938 3.50332 3.57097 3.60447 4.17010 4.28774 4.41085 4.48782 4.57985 4.64386 4.72747 4.86235 4.91707 4.95594 5.00134 5.11664 5.27006 5.29188 5.32709 5.39981 5.43972 5.47075 5.49055 5.55650 5.69580 5.69890 5.82160 5.83163 5.85997 6.03432 6.06223 6.09538 6.12625 6.23467 6.34604 6.52455 6.69183 6.73715 6.80398 6.96096 7.29185 7.47501 7.49327 7.58511 7.72128 7.91081 8.27857 8.35954 9.25167 9.95220 10.39708 11.29034 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.003270 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.334169 B = 8560.442040 C = 8932.108402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.155 4.155 4 C 0.144 3.856 5 N -0.503 5.503 6 C 0.357 3.643 7 O -0.460 6.460 8 C -0.188 4.188 9 C 0.556 3.444 10 O -0.505 6.505 11 N -0.604 5.604 12 C 0.082 3.918 13 C -0.135 4.135 14 C -0.113 4.113 15 C -0.123 4.123 16 H 0.076 0.924 17 C 0.164 3.836 18 N -0.605 5.605 19 C 0.150 3.850 20 C -0.263 4.263 21 H 0.075 0.925 22 C 0.012 3.988 23 N -0.885 5.885 24 Si 0.871 3.129 25 H -0.291 1.291 26 H -0.289 1.289 27 H -0.281 1.281 28 C 0.124 3.876 29 C -0.038 4.038 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.163 0.837 36 H 0.401 0.599 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.049 0.951 45 H 0.012 0.988 46 H 0.003 0.997 47 H 0.065 0.935 48 H 0.253 0.747 49 H 0.106 0.894 50 H 0.058 0.942 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.695 -20.513 -16.080 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.157 4.157 4 C -0.014 4.014 5 N -0.221 5.221 6 C 0.178 3.822 7 O -0.266 6.266 8 C -0.195 4.195 9 C 0.342 3.658 10 O -0.379 6.379 11 N -0.338 5.338 12 C -0.041 4.041 13 C -0.174 4.174 14 C -0.151 4.151 15 C -0.146 4.146 16 H 0.094 0.906 17 C 0.035 3.965 18 N -0.328 5.328 19 C 0.006 3.994 20 C -0.391 4.391 21 H 0.093 0.907 22 C -0.187 4.187 23 N -0.528 5.528 24 Si 0.699 3.301 25 H -0.218 1.218 26 H -0.215 1.215 27 H -0.207 1.207 28 C 0.003 3.997 29 C -0.064 4.064 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.180 0.820 36 H 0.259 0.741 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.030 0.970 46 H 0.021 0.979 47 H 0.084 0.916 48 H 0.063 0.937 49 H 0.124 0.876 50 H 0.077 0.923 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.163 -18.980 -16.778 26.071 hybrid contribution -0.730 -0.292 0.587 0.981 sum 5.433 -19.272 -16.190 25.750 Atomic orbital electron populations 1.21795 0.94278 1.02147 1.02620 1.20459 0.96462 0.91028 1.03523 1.20881 1.02442 0.98788 0.93618 1.22609 0.92210 0.88771 0.97806 1.67315 1.14793 1.08671 1.31330 1.19145 0.92569 0.84219 0.86291 1.84827 1.27482 1.18965 1.95350 1.21187 1.07806 0.95391 0.95104 1.17861 0.78345 0.86976 0.82638 1.90896 1.50431 1.13741 1.82844 1.48091 1.64160 1.10704 1.10825 1.22350 0.99863 0.81318 1.00586 1.21936 1.00768 0.98863 0.95791 1.21540 1.01019 0.96530 0.96013 1.22308 1.00880 0.93152 0.98235 0.90589 1.20646 0.95965 0.86977 0.92894 1.44017 1.12684 1.00677 1.75382 1.21097 0.92903 0.89563 0.95887 1.19083 0.87506 0.94037 1.38493 0.90718 1.24638 0.97257 0.95278 1.01478 1.70327 1.35716 0.97996 1.48795 0.86744 0.87432 0.77418 0.78459 1.21830 1.21480 1.20719 1.21867 0.99468 0.98047 0.80301 1.21909 0.93085 0.92082 0.99306 0.92312 0.92378 0.91932 0.90338 0.90478 0.82005 0.74077 0.91445 0.88735 0.90973 0.91588 0.92133 0.91668 0.94502 0.93288 0.97020 0.97861 0.91636 0.93684 0.87570 0.92345 0.82734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.15 0.37 -0.50 16 2 C -0.08 -0.40 6.08 -27.89 -0.17 -0.57 16 3 C -0.16 -1.26 5.14 -104.54 -0.54 -1.80 16 4 C 0.14 1.30 10.84 -17.49 -0.19 1.11 16 5 N -0.50 -6.24 10.37 -12.98 -0.13 -6.37 16 6 C 0.36 4.94 7.74 -16.61 -0.13 4.81 16 7 O -0.46 -6.58 12.19 -35.80 -0.44 -7.01 16 8 C -0.19 -2.54 5.46 -104.69 -0.57 -3.11 16 9 C 0.56 9.29 7.28 -12.48 -0.09 9.20 16 10 O -0.50 -10.86 15.37 -12.55 -0.19 -11.05 16 11 N -0.60 -8.84 2.97 -173.99 -0.52 -9.35 16 12 C 0.08 0.82 5.56 -3.71 -0.02 0.80 16 13 C -0.14 -1.30 5.76 -26.61 -0.15 -1.45 16 14 C -0.11 -1.35 5.17 -26.69 -0.14 -1.49 16 15 C -0.12 -2.06 2.54 -90.50 -0.23 -2.29 16 16 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 17 C 0.16 3.19 5.14 -4.04 -0.02 3.17 16 18 N -0.60 -15.11 2.77 -181.12 -0.50 -15.62 16 19 C 0.15 3.78 8.18 59.85 0.49 4.27 16 20 C -0.26 -7.35 9.65 -15.06 -0.15 -7.49 16 21 H 0.07 2.03 8.02 -52.49 -0.42 1.61 16 22 C 0.01 0.35 4.84 -17.43 -0.08 0.27 16 23 N -0.88 -26.48 10.82 55.49 0.60 -25.88 16 24 Si 0.87 22.50 29.67 -169.99 -5.04 17.46 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 27 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 28 C 0.12 2.12 4.43 -3.71 -0.02 2.11 16 29 C -0.04 -0.39 7.20 -38.89 -0.28 -0.67 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 34 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.40 3.70 9.06 45.56 0.41 4.11 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.80 3.48 -51.93 -0.18 0.62 16 39 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 40 H 0.07 0.68 7.71 -51.93 -0.40 0.28 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 44 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 45 H 0.01 0.31 8.06 -51.92 -0.42 -0.11 16 46 H 0.00 0.06 6.27 -51.93 -0.33 -0.26 16 47 H 0.07 1.85 6.15 -51.93 -0.32 1.53 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.11 2.30 5.38 -51.92 -0.28 2.02 16 50 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 51 H 0.16 1.35 5.22 -52.49 -0.27 1.08 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -35.99 397.64 -9.40 -45.39 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.24 Total: 0.10 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -1.92 Total: 6.35 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.55 Total: -57.22 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.63 Total: -18.06 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.04 Total: 17.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.99 -9.40 -45.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266469194.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.337 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds