Wall clock time and date at job start Wed Apr 1 2020 04:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47258 * 2 1 4 4 C 1.38356 * 120.26553 * 269.71959 * 3 2 1 5 5 N 1.31883 * 121.18226 * 180.27582 * 4 3 2 6 6 C 1.32233 * 121.79946 * 359.97438 * 5 4 3 7 7 O 1.35435 * 119.79692 * 180.02562 * 6 5 4 8 8 C 1.40273 * 120.40488 * 0.02562 * 6 5 4 9 9 C 1.47522 * 120.60145 * 179.97438 * 8 6 5 10 10 O 1.21593 * 120.00290 * 53.67614 * 9 8 6 11 11 N 1.34784 * 119.99884 * 233.68457 * 9 8 6 12 12 C 1.46924 * 120.62832 * 5.61631 * 11 9 8 13 13 C 1.53630 * 108.53980 * 126.36943 * 12 11 9 14 14 C 1.53046 * 109.24241 * 54.85673 * 13 12 11 15 15 C 1.53045 * 109.53618 * 298.51031 * 14 13 12 16 16 H 1.09001 * 109.52385 * 301.39668 * 15 14 13 17 17 C 1.53000 * 109.49796 * 181.31533 * 15 14 13 18 18 N 1.46497 * 109.47241 * 175.16064 * 17 15 14 19 19 C 1.46500 * 120.00057 * 89.99931 * 18 17 15 20 20 C 1.36936 * 119.99843 * 270.00205 * 18 17 15 21 21 H 1.08000 * 120.00156 * 24.88563 * 20 18 17 22 22 C 1.38811 * 119.99939 * 204.88531 * 20 18 17 23 23 N 1.31622 * 119.99699 * 5.62210 * 22 20 18 24 24 Si 1.86800 * 120.00137 * 185.62512 * 22 20 18 25 25 H 1.48495 * 109.47109 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47138 * 120.00135 * 24 22 20 27 27 H 1.48497 * 109.46809 * 239.99675 * 24 22 20 28 28 C 1.46929 * 120.62719 * 185.89926 * 11 9 8 29 29 C 1.38331 * 120.27188 * 89.99770 * 3 2 1 30 30 H 1.08993 * 109.47144 * 300.00170 * 1 2 3 31 31 H 1.08997 * 109.46899 * 60.00639 * 1 2 3 32 32 H 1.09004 * 109.46824 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47448 * 239.99424 * 2 1 3 34 34 H 1.09005 * 109.47133 * 119.99639 * 2 1 3 35 35 H 1.07997 * 119.41343 * 0.25128 * 4 3 2 36 36 H 0.96704 * 113.99264 * 269.97859 * 7 6 5 37 37 H 1.08997 * 109.58797 * 246.19721 * 12 11 9 38 38 H 1.08993 * 109.58642 * 6.63037 * 12 11 9 39 39 H 1.08991 * 109.63501 * 294.86648 * 13 12 11 40 40 H 1.09001 * 109.45489 * 174.73425 * 13 12 11 41 41 H 1.08997 * 109.46112 * 178.48754 * 14 13 12 42 42 H 1.09005 * 109.44696 * 58.52080 * 14 13 12 43 43 H 1.08995 * 109.46757 * 295.16278 * 17 15 14 44 44 H 1.08999 * 109.46703 * 55.16198 * 17 15 14 45 45 H 1.08995 * 109.47133 * 95.15044 * 19 18 17 46 46 H 1.08999 * 109.47096 * 215.15432 * 19 18 17 47 47 H 1.09004 * 109.47236 * 335.15147 * 19 18 17 48 48 H 0.97001 * 119.99987 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.58969 * 353.36832 * 28 11 9 50 50 H 1.08999 * 109.58619 * 113.65713 * 28 11 9 51 51 H 1.07998 * 120.83092 * 359.69996 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2704 2.0763 -1.1950 5 7 2.7152 3.3177 -1.2160 6 6 2.9531 3.9916 -0.1035 7 8 3.4090 5.2650 -0.1724 8 6 2.7363 3.3956 1.1477 9 6 3.0009 4.1432 2.3916 10 8 2.4895 5.2323 2.5669 11 7 3.8097 3.6190 3.3338 12 6 4.5317 2.3635 3.0864 13 6 6.0262 2.5987 3.3534 14 6 6.2042 3.1576 4.7670 15 6 5.4777 4.4997 4.8819 16 1 5.8768 5.1944 4.1428 17 6 5.6835 5.0733 6.2853 18 7 5.0866 6.4091 6.3593 19 6 3.6881 6.5649 6.7669 20 6 5.8358 7.5120 6.0474 21 1 6.6856 7.4186 5.3875 22 6 5.5030 8.7502 6.5795 23 7 4.5376 8.8463 7.4689 24 14 6.4253 10.2800 6.0331 25 1 7.4568 9.9053 5.0327 26 1 5.4716 11.2422 5.4249 27 1 7.0810 10.9086 7.2079 28 6 3.9813 4.2891 4.6301 29 6 2.2648 2.0782 1.1947 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 2.0890 1.5621 -2.1272 36 1 4.3732 5.3371 -0.1898 37 1 4.1560 1.5883 3.7540 38 1 4.3880 2.0575 2.0502 39 1 6.4202 3.3108 2.6285 40 1 6.5637 1.6545 3.2653 41 1 7.2655 3.3006 4.9701 42 1 5.7874 2.4560 5.4898 43 1 5.2073 4.4214 7.0176 44 1 6.7505 5.1399 6.4977 45 1 3.6422 6.7720 7.8361 46 1 3.2393 7.3921 6.2170 47 1 3.1422 5.6464 6.5510 48 1 4.3053 9.7114 7.8410 49 1 3.4744 5.2538 4.6127 50 1 3.5593 3.6687 5.4208 51 1 2.0862 1.5879 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266469195.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:19 Heat of formation + Delta-G solvation = -20.267275 kcal Electronic energy + Delta-G solvation = -31759.182852 eV Core-core repulsion = 27659.457217 eV Total energy + Delta-G solvation = -4099.725635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21566 -39.61245 -37.74243 -37.31914 -35.49628 -34.60807 -33.39645 -32.19326 -31.70206 -29.97792 -29.44009 -26.55606 -25.74899 -25.48297 -24.44691 -24.15565 -22.57503 -22.15653 -20.88231 -19.90237 -19.30274 -18.79182 -17.53089 -17.16853 -16.57576 -16.33740 -15.90033 -15.19017 -14.93617 -14.82190 -14.51080 -14.39283 -14.16003 -13.94509 -13.72220 -13.58468 -13.48526 -13.23528 -13.10422 -12.85425 -12.51233 -12.42008 -12.35677 -12.15073 -11.72950 -11.61786 -11.46370 -11.30337 -11.03712 -10.89482 -10.80510 -10.63430 -10.43933 -10.22134 -10.18557 -10.01330 -9.88897 -9.83523 -9.76258 -9.50310 -9.04741 -8.51378 -8.41947 -6.63309 -5.63594 -3.12877 0.44855 0.76714 2.66276 2.95564 3.23397 3.43278 3.45854 3.49891 3.51633 4.17771 4.27421 4.39754 4.49105 4.55304 4.62638 4.74432 4.87800 4.89836 4.95749 5.00872 5.11202 5.25423 5.29122 5.36336 5.41782 5.45504 5.46702 5.55108 5.55392 5.69851 5.72591 5.77872 5.82159 5.85939 6.05135 6.07908 6.10166 6.14746 6.25548 6.38372 6.55089 6.70986 6.77858 6.87949 6.97938 7.26695 7.46940 7.52902 7.57390 7.83571 7.90896 8.24564 8.49694 9.33149 9.95475 10.44473 11.40646 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.002847 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.094068 B = 9833.351775 C =10511.884671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.152 4.152 4 C 0.140 3.860 5 N -0.500 5.500 6 C 0.351 3.649 7 O -0.465 6.465 8 C -0.182 4.182 9 C 0.558 3.442 10 O -0.506 6.506 11 N -0.605 5.605 12 C 0.105 3.895 13 C -0.132 4.132 14 C -0.114 4.114 15 C -0.122 4.122 16 H 0.073 0.927 17 C 0.160 3.840 18 N -0.602 5.602 19 C 0.163 3.837 20 C -0.250 4.250 21 H 0.066 0.934 22 C 0.003 3.997 23 N -0.909 5.909 24 Si 0.904 3.096 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.123 3.877 29 C -0.030 4.030 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.163 0.837 36 H 0.403 0.597 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.036 0.964 44 H 0.050 0.950 45 H 0.028 0.972 46 H 0.044 0.956 47 H -0.004 1.004 48 H 0.251 0.749 49 H 0.106 0.894 50 H 0.059 0.941 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 -23.669 -14.362 27.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.154 4.154 4 C -0.018 4.018 5 N -0.218 5.218 6 C 0.172 3.828 7 O -0.272 6.272 8 C -0.188 4.188 9 C 0.344 3.656 10 O -0.380 6.380 11 N -0.339 5.339 12 C -0.018 4.018 13 C -0.170 4.170 14 C -0.152 4.152 15 C -0.144 4.144 16 H 0.091 0.909 17 C 0.031 3.969 18 N -0.325 5.325 19 C 0.019 3.981 20 C -0.380 4.380 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.555 5.555 24 Si 0.734 3.266 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.218 1.218 28 C 0.002 3.998 29 C -0.056 4.056 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.180 0.820 36 H 0.262 0.738 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.063 0.937 47 H 0.014 0.986 48 H 0.061 0.939 49 H 0.124 0.876 50 H 0.078 0.922 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.353 -22.242 -14.911 26.987 hybrid contribution 0.818 0.463 0.451 1.043 sum -2.535 -21.779 -14.460 26.264 Atomic orbital electron populations 1.21789 0.94354 1.02091 1.02540 1.20455 0.96388 0.91092 1.03521 1.20839 1.02350 0.98602 0.93604 1.22589 0.92597 0.88780 0.97796 1.67292 1.14538 1.08647 1.31304 1.19123 0.93066 0.84329 0.86316 1.84819 1.27581 1.19364 1.95396 1.21120 1.07239 0.95425 0.95039 1.17902 0.79865 0.85338 0.82523 1.90897 1.49876 1.19327 1.77894 1.48179 1.44801 1.24667 1.16223 1.21894 0.92582 0.86071 1.01256 1.21976 0.95047 1.01251 0.98762 1.21556 1.00888 0.97340 0.95408 1.22283 0.93881 0.95633 1.02614 0.90868 1.20705 0.97392 0.87181 0.91609 1.43869 1.08467 1.00669 1.79482 1.20877 0.83112 0.95170 0.98968 1.19173 1.10220 0.86566 1.22038 0.91656 1.25094 0.98721 0.98449 0.97274 1.70060 1.31613 1.23175 1.30648 0.86191 0.79208 0.83503 0.77698 1.20415 1.21651 1.21759 1.21884 0.97717 0.98896 0.81323 1.21557 0.93435 0.91608 0.99028 0.92411 0.92368 0.91978 0.90339 0.90511 0.82036 0.73848 0.91360 0.90523 0.91710 0.91178 0.91705 0.92135 0.94614 0.93160 0.95349 0.93726 0.98586 0.93879 0.87565 0.92234 0.83937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.90 37.16 0.37 -0.39 16 2 C -0.08 -0.36 6.08 -27.88 -0.17 -0.53 16 3 C -0.15 -1.17 5.14 -104.54 -0.54 -1.71 16 4 C 0.14 1.23 10.84 -17.49 -0.19 1.04 16 5 N -0.50 -6.14 10.37 -12.98 -0.13 -6.27 16 6 C 0.35 4.81 7.76 -16.61 -0.13 4.68 16 7 O -0.46 -6.78 12.76 -21.24 -0.27 -7.05 16 8 C -0.18 -2.37 4.63 -104.69 -0.48 -2.85 16 9 C 0.56 9.12 6.86 -12.47 -0.09 9.04 16 10 O -0.51 -10.90 16.18 2.04 0.03 -10.87 16 11 N -0.60 -8.66 2.97 -173.73 -0.52 -9.17 16 12 C 0.11 1.06 5.63 -3.48 -0.02 1.04 16 13 C -0.13 -1.34 6.10 -26.38 -0.16 -1.50 16 14 C -0.11 -1.40 5.17 -26.68 -0.14 -1.53 16 15 C -0.12 -2.04 2.55 -90.49 -0.23 -2.27 16 16 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 17 C 0.16 3.17 5.14 -4.04 -0.02 3.15 16 18 N -0.60 -15.22 2.77 -181.12 -0.50 -15.72 16 19 C 0.16 4.15 7.92 59.85 0.47 4.62 16 20 C -0.25 -7.00 9.66 -15.06 -0.15 -7.15 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 22 C 0.00 0.07 5.24 -17.43 -0.09 -0.02 16 23 N -0.91 -27.30 10.45 55.49 0.58 -26.72 16 24 Si 0.90 22.64 29.56 -169.99 -5.02 17.61 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 C 0.12 2.08 4.45 -3.71 -0.02 2.06 16 29 C -0.03 -0.29 7.58 -38.89 -0.29 -0.58 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 34 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 35 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.40 4.00 9.06 45.56 0.41 4.41 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.67 5.37 -51.93 -0.28 0.39 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 44 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 45 H 0.03 0.77 7.34 -51.93 -0.38 0.39 16 46 H 0.04 1.26 7.27 -51.93 -0.38 0.88 16 47 H 0.00 -0.10 6.27 -51.93 -0.33 -0.42 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.11 2.28 5.34 -51.93 -0.28 2.00 16 50 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 51 H 0.14 1.11 7.79 -52.49 -0.41 0.70 16 LS Contribution 403.30 15.07 6.08 6.08 Total: -1.00 -36.03 403.30 -9.14 -45.17 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.51 Total: -0.15 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -1.87 Total: 7.09 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.57 Total: -57.88 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.24 Total: -17.92 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.03 -9.14 -45.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266469195.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.898 kcal (2) G-P(sol) polarization free energy of solvation -36.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds