Wall clock time and date at job start Wed Apr 1 2020 04:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47258 * 2 1 4 4 C 1.38356 * 120.26553 * 269.71959 * 3 2 1 5 5 N 1.31883 * 121.18226 * 180.27582 * 4 3 2 6 6 C 1.32233 * 121.79946 * 359.97438 * 5 4 3 7 7 O 1.35435 * 119.79692 * 180.02562 * 6 5 4 8 8 C 1.40273 * 120.40488 * 0.02562 * 6 5 4 9 9 C 1.47522 * 120.60145 * 179.97438 * 8 6 5 10 10 O 1.21593 * 120.00290 * 53.67614 * 9 8 6 11 11 N 1.34784 * 119.99884 * 233.68457 * 9 8 6 12 12 C 1.46924 * 120.62832 * 5.61631 * 11 9 8 13 13 C 1.53630 * 108.53980 * 126.36943 * 12 11 9 14 14 C 1.53046 * 109.24241 * 54.85673 * 13 12 11 15 15 C 1.53045 * 109.53618 * 298.51031 * 14 13 12 16 16 H 1.09001 * 109.52385 * 301.39668 * 15 14 13 17 17 C 1.53000 * 109.49796 * 181.31533 * 15 14 13 18 18 N 1.46497 * 109.47241 * 175.16064 * 17 15 14 19 19 C 1.46500 * 120.00057 * 89.99931 * 18 17 15 20 20 C 1.36936 * 119.99843 * 270.00205 * 18 17 15 21 21 H 1.08000 * 120.00156 * 24.88563 * 20 18 17 22 22 C 1.38811 * 119.99939 * 204.88531 * 20 18 17 23 23 N 1.31622 * 119.99699 * 5.62210 * 22 20 18 24 24 Si 1.86800 * 120.00137 * 185.62512 * 22 20 18 25 25 H 1.48495 * 109.47109 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47138 * 120.00135 * 24 22 20 27 27 H 1.48497 * 109.46809 * 239.99675 * 24 22 20 28 28 C 1.46929 * 120.62719 * 185.89926 * 11 9 8 29 29 C 1.38331 * 120.27188 * 89.99770 * 3 2 1 30 30 H 1.08993 * 109.47144 * 300.00170 * 1 2 3 31 31 H 1.08997 * 109.46899 * 60.00639 * 1 2 3 32 32 H 1.09004 * 109.46824 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47448 * 239.99424 * 2 1 3 34 34 H 1.09005 * 109.47133 * 119.99639 * 2 1 3 35 35 H 1.07997 * 119.41343 * 0.25128 * 4 3 2 36 36 H 0.96704 * 113.99264 * 269.97859 * 7 6 5 37 37 H 1.08997 * 109.58797 * 246.19721 * 12 11 9 38 38 H 1.08993 * 109.58642 * 6.63037 * 12 11 9 39 39 H 1.08991 * 109.63501 * 294.86648 * 13 12 11 40 40 H 1.09001 * 109.45489 * 174.73425 * 13 12 11 41 41 H 1.08997 * 109.46112 * 178.48754 * 14 13 12 42 42 H 1.09005 * 109.44696 * 58.52080 * 14 13 12 43 43 H 1.08995 * 109.46757 * 295.16278 * 17 15 14 44 44 H 1.08999 * 109.46703 * 55.16198 * 17 15 14 45 45 H 1.08995 * 109.47133 * 95.15044 * 19 18 17 46 46 H 1.08999 * 109.47096 * 215.15432 * 19 18 17 47 47 H 1.09004 * 109.47236 * 335.15147 * 19 18 17 48 48 H 0.97001 * 119.99987 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.58969 * 353.36832 * 28 11 9 50 50 H 1.08999 * 109.58619 * 113.65713 * 28 11 9 51 51 H 1.07998 * 120.83092 * 359.69996 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2704 2.0763 -1.1950 5 7 2.7152 3.3177 -1.2160 6 6 2.9531 3.9916 -0.1035 7 8 3.4090 5.2650 -0.1724 8 6 2.7363 3.3956 1.1477 9 6 3.0009 4.1432 2.3916 10 8 2.4895 5.2323 2.5669 11 7 3.8097 3.6190 3.3338 12 6 4.5317 2.3635 3.0864 13 6 6.0262 2.5987 3.3534 14 6 6.2042 3.1576 4.7670 15 6 5.4777 4.4997 4.8819 16 1 5.8768 5.1944 4.1428 17 6 5.6835 5.0733 6.2853 18 7 5.0866 6.4091 6.3593 19 6 3.6881 6.5649 6.7669 20 6 5.8358 7.5120 6.0474 21 1 6.6856 7.4186 5.3875 22 6 5.5030 8.7502 6.5795 23 7 4.5376 8.8463 7.4689 24 14 6.4253 10.2800 6.0331 25 1 7.4568 9.9053 5.0327 26 1 5.4716 11.2422 5.4249 27 1 7.0810 10.9086 7.2079 28 6 3.9813 4.2891 4.6301 29 6 2.2648 2.0782 1.1947 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 2.0890 1.5621 -2.1272 36 1 4.3732 5.3371 -0.1898 37 1 4.1560 1.5883 3.7540 38 1 4.3880 2.0575 2.0502 39 1 6.4202 3.3108 2.6285 40 1 6.5637 1.6545 3.2653 41 1 7.2655 3.3006 4.9701 42 1 5.7874 2.4560 5.4898 43 1 5.2073 4.4214 7.0176 44 1 6.7505 5.1399 6.4977 45 1 3.6422 6.7720 7.8361 46 1 3.2393 7.3921 6.2170 47 1 3.1422 5.6464 6.5510 48 1 4.3053 9.7114 7.8410 49 1 3.4744 5.2538 4.6127 50 1 3.5593 3.6687 5.4208 51 1 2.0862 1.5879 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266469195.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:18 Heat of formation + Delta-G solvation = -47.142000 kcal Electronic energy + Delta-G solvation = -31760.348227 eV Core-core repulsion = 27659.457217 eV Total energy + Delta-G solvation = -4100.891011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.15966 -40.71414 -38.92164 -38.44464 -37.21712 -35.23476 -34.75054 -33.37134 -33.05220 -31.57231 -30.11316 -28.32882 -27.39436 -26.84393 -25.16240 -25.02163 -23.97699 -22.95302 -22.34903 -21.25631 -20.34919 -19.75267 -18.72048 -18.41968 -18.14719 -17.33937 -17.05126 -16.90672 -16.14471 -15.78368 -15.68060 -15.52119 -15.27996 -15.02070 -14.78657 -14.73169 -14.56845 -14.37489 -14.06999 -13.95119 -13.92390 -13.87421 -13.15736 -13.10180 -13.03691 -12.89815 -12.84365 -12.60880 -12.38040 -12.28711 -12.09835 -11.99484 -11.89080 -11.82089 -11.72706 -11.56981 -11.34137 -11.26438 -10.83946 -10.64718 -10.47922 -9.86592 -9.64749 -8.72733 -7.82923 -5.33845 -0.39412 -0.00192 1.40184 1.42711 1.49036 1.51889 1.88157 2.38376 2.47787 2.60759 3.27117 3.30735 3.62104 3.67384 3.68894 3.81476 3.89551 3.96077 4.04984 4.09112 4.17137 4.23641 4.35617 4.47545 4.52286 4.55488 4.59979 4.70518 4.75669 4.80083 4.83154 4.85258 4.89063 4.92165 4.93092 5.05792 5.13058 5.18555 5.22030 5.34665 5.35278 5.38190 5.42902 5.50415 5.53324 5.57641 5.62115 5.71679 6.29474 6.33907 6.42976 6.75725 7.04136 7.15531 7.88288 8.31494 9.19640 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.002847 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.094068 B = 9833.351775 C =10511.884671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.072 4.072 3 C -0.132 4.132 4 C 0.142 3.858 5 N -0.521 5.521 6 C 0.326 3.674 7 O -0.493 6.493 8 C -0.197 4.197 9 C 0.556 3.444 10 O -0.576 6.576 11 N -0.598 5.598 12 C 0.100 3.900 13 C -0.127 4.127 14 C -0.107 4.107 15 C -0.108 4.108 16 H 0.035 0.965 17 C 0.156 3.844 18 N -0.619 5.619 19 C 0.185 3.815 20 C -0.254 4.254 21 H 0.066 0.934 22 C -0.057 4.057 23 N -0.941 5.941 24 Si 0.966 3.034 25 H -0.267 1.267 26 H -0.297 1.297 27 H -0.286 1.286 28 C 0.128 3.872 29 C -0.024 4.024 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.198 0.802 36 H 0.413 0.587 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.005 0.995 46 H 0.003 0.997 47 H 0.027 0.973 48 H 0.246 0.754 49 H 0.053 0.947 50 H 0.079 0.921 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -28.596 -15.714 32.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.134 4.134 4 C -0.015 4.015 5 N -0.240 5.240 6 C 0.148 3.852 7 O -0.302 6.302 8 C -0.204 4.204 9 C 0.344 3.656 10 O -0.456 6.456 11 N -0.330 5.330 12 C -0.021 4.021 13 C -0.165 4.165 14 C -0.145 4.145 15 C -0.130 4.130 16 H 0.054 0.946 17 C 0.030 3.970 18 N -0.343 5.343 19 C 0.040 3.960 20 C -0.385 4.385 21 H 0.084 0.916 22 C -0.252 4.252 23 N -0.588 5.588 24 Si 0.794 3.206 25 H -0.191 1.191 26 H -0.224 1.224 27 H -0.212 1.212 28 C 0.005 3.995 29 C -0.050 4.050 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.215 0.785 36 H 0.274 0.726 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.023 0.977 46 H 0.021 0.979 47 H 0.045 0.955 48 H 0.056 0.944 49 H 0.072 0.928 50 H 0.097 0.903 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.432 -27.259 -16.278 31.842 hybrid contribution 0.521 1.825 0.788 2.055 sum -1.911 -25.433 -15.490 29.841 Atomic orbital electron populations 1.21810 0.94594 1.02881 1.01703 1.20568 0.95897 0.88860 1.05654 1.21186 1.00071 0.99890 0.92296 1.23307 0.90752 0.87631 0.99857 1.67319 1.15646 1.10244 1.30754 1.19280 0.94506 0.84236 0.87147 1.84770 1.28870 1.21015 1.95581 1.20862 1.09804 0.96832 0.92893 1.18460 0.79042 0.84641 0.83503 1.90856 1.52764 1.22543 1.79422 1.48227 1.44334 1.25688 1.14766 1.22281 0.92068 0.84413 1.03305 1.21974 0.95362 1.02598 0.96565 1.21520 1.00570 0.94647 0.97730 1.21999 0.94291 0.97603 0.99067 0.94614 1.20949 0.97159 0.84923 0.94012 1.44094 1.08306 1.02315 1.79544 1.20510 0.83866 0.95034 0.96636 1.19474 1.09920 0.87794 1.21303 0.91640 1.25866 0.99964 1.01379 0.97959 1.70229 1.33196 1.23338 1.32086 0.85211 0.78046 0.79790 0.77509 1.19088 1.22431 1.21220 1.21587 0.97236 0.97237 0.83393 1.21822 0.92341 0.89975 1.00865 0.93736 0.92829 0.90420 0.87937 0.88756 0.78539 0.72641 0.88102 0.88734 0.93345 0.87169 0.91127 0.89782 0.92551 0.93161 0.97699 0.97853 0.95467 0.94439 0.92839 0.90296 0.81760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.90 71.98 0.71 -0.25 16 2 C -0.07 -0.32 6.08 29.85 0.18 -0.14 16 3 C -0.13 -1.54 5.14 -19.81 -0.10 -1.65 16 4 C 0.14 2.07 10.84 84.71 0.92 2.99 16 5 N -0.52 -12.34 10.37 -308.00 -3.19 -15.53 16 6 C 0.33 9.15 7.76 85.13 0.66 9.81 16 7 O -0.49 -15.58 12.76 -84.21 -1.07 -16.66 16 8 C -0.20 -5.09 4.63 -19.91 -0.09 -5.19 16 9 C 0.56 18.81 6.86 86.69 0.59 19.40 16 10 O -0.58 -26.91 16.18 -0.91 -0.01 -26.93 16 11 N -0.60 -16.77 2.97 -821.82 -2.44 -19.21 16 12 C 0.10 1.65 5.63 86.51 0.49 2.14 16 13 C -0.13 -2.10 6.10 30.82 0.19 -1.91 16 14 C -0.11 -2.29 5.17 30.62 0.16 -2.13 16 15 C -0.11 -3.57 2.55 -10.71 -0.03 -3.60 16 16 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 17 C 0.16 6.16 5.14 86.38 0.44 6.60 16 18 N -0.62 -32.38 2.77 -726.96 -2.01 -34.39 16 19 C 0.18 9.87 7.92 127.77 1.01 10.88 16 20 C -0.25 -14.74 9.66 84.03 0.81 -13.92 16 21 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 22 C -0.06 -3.41 5.24 84.86 0.44 -2.97 16 23 N -0.94 -59.03 10.45 21.65 0.23 -58.80 16 24 Si 0.97 48.11 29.56 68.60 2.03 50.14 16 25 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 26 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 28 C 0.13 4.35 4.45 86.36 0.38 4.74 16 29 C -0.02 -0.39 7.58 22.72 0.17 -0.22 16 30 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.10 0.06 8.09 -2.39 -0.02 0.04 16 34 H 0.09 0.18 8.09 -2.38 -0.02 0.16 16 35 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.41 9.33 9.06 -74.05 -0.67 8.66 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.29 5.37 -2.39 -0.01 1.27 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 44 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 45 H 0.00 0.27 7.34 -2.39 -0.02 0.26 16 46 H 0.00 0.16 7.27 -2.39 -0.02 0.14 16 47 H 0.03 1.25 6.27 -2.38 -0.01 1.23 16 48 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 49 H 0.05 2.43 5.34 -2.39 -0.01 2.42 16 50 H 0.08 2.36 8.10 -2.39 -0.02 2.34 16 51 H 0.16 1.89 7.79 -2.91 -0.02 1.87 16 Total: -1.00 -86.89 403.30 0.73 -86.15 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.26 Total: 10.65 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 6.95 Total: 24.58 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -7.42 Total: -127.94 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.09 Total: -43.58 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -86.89 0.73 -86.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266469195.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.011 kcal (2) G-P(sol) polarization free energy of solvation -86.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds