Wall clock time and date at job start Wed Apr 1 2020 04:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47145 * 2 1 4 4 C 1.38357 * 120.26881 * 270.02307 * 3 2 1 5 5 N 1.31881 * 121.18416 * 179.97438 * 4 3 2 6 6 C 1.32236 * 121.79844 * 359.65424 * 5 4 3 7 7 O 1.35427 * 119.80028 * 180.31167 * 6 5 4 8 8 C 1.40280 * 120.40196 * 0.63203 * 6 5 4 9 9 C 1.47520 * 120.59940 * 179.68001 * 8 6 5 10 10 O 1.21591 * 119.99690 * 52.96956 * 9 8 6 11 11 N 1.34772 * 120.00209 * 232.96932 * 9 8 6 12 12 C 1.46926 * 120.63071 * 176.09658 * 11 9 8 13 13 C 1.53198 * 108.77147 * 233.62987 * 12 11 9 14 14 C 1.53040 * 109.31267 * 305.36081 * 13 12 11 15 15 C 1.53001 * 109.45858 * 181.38745 * 14 13 12 16 16 H 1.09006 * 109.46943 * 60.00138 * 15 14 13 17 17 C 1.53006 * 109.47021 * 300.00244 * 15 14 13 18 18 N 1.46494 * 109.47109 * 180.02562 * 15 14 13 19 19 C 1.36940 * 120.00035 * 204.72521 * 18 15 14 20 20 H 1.07998 * 119.99986 * 0.27782 * 19 18 15 21 21 C 1.38818 * 120.00185 * 180.27102 * 19 18 15 22 22 N 1.31616 * 119.99723 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99877 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47148 * 90.00152 * 23 21 19 25 25 H 1.48501 * 109.47031 * 210.00186 * 23 21 19 26 26 H 1.48496 * 109.47328 * 330.00261 * 23 21 19 27 27 C 1.53035 * 109.53401 * 61.36958 * 14 13 12 28 28 C 1.46923 * 120.62908 * 356.11863 * 11 9 8 29 29 C 1.38327 * 120.26970 * 90.00274 * 3 2 1 30 30 H 1.08997 * 109.47412 * 60.00261 * 1 2 3 31 31 H 1.09005 * 109.47059 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47178 * 299.99926 * 1 2 3 33 33 H 1.08998 * 109.47111 * 239.99689 * 2 1 3 34 34 H 1.09004 * 109.47075 * 119.99627 * 2 1 3 35 35 H 1.08002 * 119.40877 * 359.97242 * 4 3 2 36 36 H 0.96696 * 114.00264 * 270.32360 * 7 6 5 37 37 H 1.08998 * 109.59072 * 113.84384 * 12 11 9 38 38 H 1.08995 * 109.70596 * 353.48137 * 12 11 9 39 39 H 1.09009 * 109.49582 * 185.41217 * 13 12 11 40 40 H 1.09001 * 109.52563 * 65.33178 * 13 12 11 41 41 H 1.08994 * 109.46397 * 301.36157 * 14 13 12 42 42 H 1.09001 * 109.46766 * 179.97438 * 17 15 14 43 43 H 1.08992 * 109.47050 * 299.99821 * 17 15 14 44 44 H 1.08996 * 109.47249 * 60.00390 * 17 15 14 45 45 H 0.97001 * 120.00476 * 24.99332 * 18 15 14 46 46 H 0.96995 * 119.99798 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.50014 * 58.58608 * 27 14 13 48 48 H 1.09005 * 109.49794 * 178.68302 * 27 14 13 49 49 H 1.09005 * 109.58480 * 246.15292 * 28 11 9 50 50 H 1.08996 * 109.59092 * 6.57999 * 28 11 9 51 51 H 1.08001 * 120.83225 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2643 2.0786 -1.1949 5 7 2.7034 3.3219 -1.2160 6 6 2.9352 3.9980 -0.1034 7 8 3.3797 5.2754 -0.1723 8 6 2.7297 3.3979 1.1478 9 6 2.9936 4.1458 2.3917 10 8 2.4834 5.2357 2.5656 11 7 3.8001 3.6210 3.3353 12 6 4.1406 4.3891 4.5406 13 6 5.6655 4.4373 4.6800 14 6 6.2204 3.0111 4.6660 15 6 7.7399 3.0537 4.8397 16 1 7.9838 3.5293 5.7897 17 6 8.3620 3.8545 3.6939 18 7 8.2714 1.6887 4.8257 19 6 9.4609 1.4106 5.4447 20 1 10.0049 2.1968 5.9471 21 6 9.9673 0.1183 5.4267 22 7 9.3045 -0.8397 4.8141 23 14 11.5902 -0.2607 6.2705 24 1 11.3361 -0.6459 7.6820 25 1 12.2650 -1.3801 5.5656 26 1 12.4596 0.9426 6.2346 27 6 5.8782 2.3420 3.3329 28 6 4.3558 2.2700 3.1781 29 6 2.2648 2.0782 1.1947 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.0827 1.5644 -2.1272 36 1 4.3431 5.3559 -0.1947 37 1 3.7088 3.9051 5.4166 38 1 3.7495 5.4027 4.4532 39 1 5.9297 4.9213 5.6203 40 1 6.0896 5.0009 3.8490 41 1 5.7774 2.4410 5.4825 42 1 9.4445 3.8852 3.8180 43 1 8.1181 3.3790 2.7440 44 1 7.9666 4.8702 3.7039 45 1 7.7828 0.9825 4.3746 46 1 9.6582 -1.7428 4.8018 47 1 6.2999 2.9252 2.5142 48 1 6.2937 1.3345 3.3143 49 1 3.9415 1.6132 3.9430 50 1 4.1068 1.8852 2.1892 51 1 2.0905 1.5863 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267208629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:13 Heat of formation + Delta-G solvation = -34.391775 kcal Electronic energy + Delta-G solvation = -31521.577572 eV Core-core repulsion = 27421.239452 eV Total energy + Delta-G solvation = -4100.338119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31849 -39.79550 -38.06983 -37.56930 -35.45906 -34.59817 -33.37222 -32.53286 -30.92182 -30.58859 -29.45343 -28.23927 -25.89281 -24.75638 -24.41558 -23.77773 -23.20098 -22.37628 -21.29212 -19.81888 -19.10419 -18.52470 -17.65611 -17.29920 -17.10780 -16.42806 -16.04530 -15.21299 -15.04467 -14.91044 -14.47903 -14.38876 -14.28366 -13.92499 -13.86592 -13.68868 -13.62128 -13.41673 -13.06547 -13.00402 -12.66032 -12.44506 -12.23066 -12.17618 -12.00349 -11.74324 -11.65657 -11.44309 -11.42020 -11.08291 -10.87925 -10.65133 -10.41901 -10.35034 -10.33581 -10.16679 -10.02445 -9.76974 -9.59706 -9.54717 -9.09553 -8.94447 -8.67928 -6.99099 -5.80888 -3.08544 0.40725 0.74710 2.46888 2.80116 3.15575 3.40235 3.42938 3.46113 3.47101 4.09758 4.28195 4.37871 4.48002 4.55116 4.63270 4.79897 4.91040 4.95658 4.98021 5.04036 5.08125 5.15820 5.26438 5.31780 5.40052 5.44947 5.47601 5.51299 5.56642 5.59006 5.74555 5.76157 5.80703 5.85068 5.91348 5.93118 6.06954 6.07254 6.14366 6.21418 6.25742 6.42001 6.50035 6.61712 6.71171 6.87791 7.10918 7.17433 7.26660 7.52795 7.67366 7.99933 8.38819 9.49970 10.07966 10.42367 11.42064 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.002785 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.770463 B =10051.087198 C =11245.433650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.148 4.148 4 C 0.144 3.856 5 N -0.500 5.500 6 C 0.352 3.648 7 O -0.468 6.468 8 C -0.186 4.186 9 C 0.565 3.435 10 O -0.524 6.524 11 N -0.600 5.600 12 C 0.113 3.887 13 C -0.128 4.128 14 C -0.090 4.090 15 C 0.178 3.822 16 H 0.046 0.954 17 C -0.167 4.167 18 N -0.724 5.724 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.935 5.935 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.127 4.127 28 C 0.098 3.902 29 C -0.030 4.030 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.164 0.836 36 H 0.402 0.598 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.046 0.954 44 H 0.037 0.963 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.067 0.933 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.838 4.056 -9.151 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.150 4.150 4 C -0.014 4.014 5 N -0.217 5.217 6 C 0.172 3.828 7 O -0.275 6.275 8 C -0.193 4.193 9 C 0.352 3.648 10 O -0.400 6.400 11 N -0.333 5.333 12 C -0.009 4.009 13 C -0.167 4.167 14 C -0.109 4.109 15 C 0.068 3.932 16 H 0.064 0.936 17 C -0.227 4.227 18 N -0.367 5.367 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.165 4.165 28 C -0.025 4.025 29 C -0.056 4.056 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.181 0.819 36 H 0.261 0.739 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.101 0.899 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.349 5.270 -9.701 20.563 hybrid contribution 1.287 -1.045 1.031 1.953 sum -16.061 4.224 -8.670 18.734 Atomic orbital electron populations 1.21783 0.94363 1.02176 1.02336 1.20491 0.96307 0.91008 1.03961 1.20868 1.01949 0.98646 0.93536 1.22623 0.92188 0.88679 0.97921 1.67291 1.14476 1.08782 1.31187 1.19049 0.93205 0.84233 0.86285 1.84774 1.27820 1.19442 1.95446 1.20994 1.07967 0.95521 0.94796 1.17877 0.79227 0.85258 0.82458 1.90814 1.50006 1.20651 1.78573 1.48079 1.47418 1.17155 1.20621 1.21675 0.96039 0.97257 0.85889 1.22024 0.93853 0.98013 1.02792 1.21393 0.97560 0.94805 0.97167 1.20190 0.89453 0.87603 0.95941 0.93582 1.22533 1.01319 0.98305 1.00521 1.42485 1.24463 1.04072 1.65646 1.19245 0.97342 0.93619 1.26494 0.91298 1.24707 0.98967 0.95984 1.01338 1.69641 1.39535 1.00996 1.48161 0.86220 0.83626 0.77565 0.78973 1.21778 1.21822 1.20843 1.21976 0.93208 1.02864 0.98490 1.22105 0.95451 0.82546 1.02360 1.21606 0.93197 0.91577 0.99223 0.92443 0.91882 0.92522 0.90132 0.90202 0.81878 0.73904 0.91354 0.89158 0.90591 0.91186 0.90976 0.93120 0.93452 0.94401 0.78237 0.93581 0.91479 0.89499 0.90842 0.89878 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.44 16 2 C -0.08 -0.45 6.08 -27.88 -0.17 -0.62 16 3 C -0.15 -1.20 5.14 -104.54 -0.54 -1.74 16 4 C 0.14 1.30 10.84 -17.49 -0.19 1.11 16 5 N -0.50 -5.99 10.37 -12.98 -0.13 -6.12 16 6 C 0.35 4.48 7.75 -16.61 -0.13 4.35 16 7 O -0.47 -5.93 12.74 -22.09 -0.28 -6.22 16 8 C -0.19 -2.25 4.93 -104.69 -0.52 -2.76 16 9 C 0.57 7.76 6.90 -12.48 -0.09 7.67 16 10 O -0.52 -8.99 16.16 1.17 0.02 -8.97 16 11 N -0.60 -7.25 2.97 -174.01 -0.52 -7.77 16 12 C 0.11 1.33 6.42 -3.71 -0.02 1.31 16 13 C -0.13 -1.57 4.97 -26.61 -0.13 -1.70 16 14 C -0.09 -1.30 2.14 -90.58 -0.19 -1.50 16 15 C 0.18 3.26 2.72 -67.93 -0.18 3.07 16 16 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 17 C -0.17 -2.85 8.78 37.16 0.33 -2.53 16 18 N -0.72 -16.97 5.04 -53.42 -0.27 -17.24 16 19 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 23 Si 0.90 21.90 29.55 -169.99 -5.02 16.88 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C -0.13 -1.73 4.81 -26.62 -0.13 -1.86 16 28 C 0.10 1.09 5.53 -3.71 -0.02 1.07 16 29 C -0.03 -0.28 7.21 -38.89 -0.28 -0.56 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.40 3.31 9.06 45.56 0.41 3.73 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.13 7.03 -51.93 -0.37 0.76 16 39 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.07 0.89 6.51 -51.93 -0.34 0.55 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.81 6.46 -51.93 -0.34 0.47 16 44 H 0.04 0.55 6.46 -51.93 -0.34 0.21 16 45 H 0.38 9.36 6.04 -40.82 -0.25 9.11 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.07 0.94 6.51 -51.93 -0.34 0.60 16 48 H 0.09 1.36 6.46 -51.93 -0.34 1.03 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.08 0.84 4.69 -51.93 -0.24 0.59 16 51 H 0.15 1.13 7.36 -52.49 -0.39 0.74 16 LS Contribution 400.95 15.07 6.04 6.04 Total: -1.00 -33.85 400.95 -8.71 -42.56 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.12 Total: 9.34 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.14 Total: -2.07 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.20 Total: -57.56 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.26 Total: -15.19 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.85 -8.71 -42.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267208629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.165 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds