Wall clock time and date at job start Wed Apr 1 2020 04:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47145 * 2 1 4 4 C 1.38357 * 120.26881 * 270.02307 * 3 2 1 5 5 N 1.31881 * 121.18416 * 179.97438 * 4 3 2 6 6 C 1.32236 * 121.79844 * 359.65424 * 5 4 3 7 7 O 1.35427 * 119.80028 * 180.31167 * 6 5 4 8 8 C 1.40280 * 120.40196 * 0.63203 * 6 5 4 9 9 C 1.47520 * 120.59940 * 179.68001 * 8 6 5 10 10 O 1.21591 * 119.99690 * 52.96956 * 9 8 6 11 11 N 1.34772 * 120.00209 * 232.96932 * 9 8 6 12 12 C 1.46926 * 120.63071 * 176.09658 * 11 9 8 13 13 C 1.53198 * 108.77147 * 233.62987 * 12 11 9 14 14 C 1.53040 * 109.31267 * 305.36081 * 13 12 11 15 15 C 1.53001 * 109.45858 * 181.38745 * 14 13 12 16 16 H 1.09006 * 109.46943 * 60.00138 * 15 14 13 17 17 C 1.53006 * 109.47021 * 300.00244 * 15 14 13 18 18 N 1.46494 * 109.47109 * 180.02562 * 15 14 13 19 19 C 1.36940 * 120.00035 * 204.72521 * 18 15 14 20 20 H 1.07998 * 119.99986 * 0.27782 * 19 18 15 21 21 C 1.38818 * 120.00185 * 180.27102 * 19 18 15 22 22 N 1.31616 * 119.99723 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99877 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47148 * 90.00152 * 23 21 19 25 25 H 1.48501 * 109.47031 * 210.00186 * 23 21 19 26 26 H 1.48496 * 109.47328 * 330.00261 * 23 21 19 27 27 C 1.53035 * 109.53401 * 61.36958 * 14 13 12 28 28 C 1.46923 * 120.62908 * 356.11863 * 11 9 8 29 29 C 1.38327 * 120.26970 * 90.00274 * 3 2 1 30 30 H 1.08997 * 109.47412 * 60.00261 * 1 2 3 31 31 H 1.09005 * 109.47059 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47178 * 299.99926 * 1 2 3 33 33 H 1.08998 * 109.47111 * 239.99689 * 2 1 3 34 34 H 1.09004 * 109.47075 * 119.99627 * 2 1 3 35 35 H 1.08002 * 119.40877 * 359.97242 * 4 3 2 36 36 H 0.96696 * 114.00264 * 270.32360 * 7 6 5 37 37 H 1.08998 * 109.59072 * 113.84384 * 12 11 9 38 38 H 1.08995 * 109.70596 * 353.48137 * 12 11 9 39 39 H 1.09009 * 109.49582 * 185.41217 * 13 12 11 40 40 H 1.09001 * 109.52563 * 65.33178 * 13 12 11 41 41 H 1.08994 * 109.46397 * 301.36157 * 14 13 12 42 42 H 1.09001 * 109.46766 * 179.97438 * 17 15 14 43 43 H 1.08992 * 109.47050 * 299.99821 * 17 15 14 44 44 H 1.08996 * 109.47249 * 60.00390 * 17 15 14 45 45 H 0.97001 * 120.00476 * 24.99332 * 18 15 14 46 46 H 0.96995 * 119.99798 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.50014 * 58.58608 * 27 14 13 48 48 H 1.09005 * 109.49794 * 178.68302 * 27 14 13 49 49 H 1.09005 * 109.58480 * 246.15292 * 28 11 9 50 50 H 1.08996 * 109.59092 * 6.57999 * 28 11 9 51 51 H 1.08001 * 120.83225 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2643 2.0786 -1.1949 5 7 2.7034 3.3219 -1.2160 6 6 2.9352 3.9980 -0.1034 7 8 3.3797 5.2754 -0.1723 8 6 2.7297 3.3979 1.1478 9 6 2.9936 4.1458 2.3917 10 8 2.4834 5.2357 2.5656 11 7 3.8001 3.6210 3.3353 12 6 4.1406 4.3891 4.5406 13 6 5.6655 4.4373 4.6800 14 6 6.2204 3.0111 4.6660 15 6 7.7399 3.0537 4.8397 16 1 7.9838 3.5293 5.7897 17 6 8.3620 3.8545 3.6939 18 7 8.2714 1.6887 4.8257 19 6 9.4609 1.4106 5.4447 20 1 10.0049 2.1968 5.9471 21 6 9.9673 0.1183 5.4267 22 7 9.3045 -0.8397 4.8141 23 14 11.5902 -0.2607 6.2705 24 1 11.3361 -0.6459 7.6820 25 1 12.2650 -1.3801 5.5656 26 1 12.4596 0.9426 6.2346 27 6 5.8782 2.3420 3.3329 28 6 4.3558 2.2700 3.1781 29 6 2.2648 2.0782 1.1947 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.0827 1.5644 -2.1272 36 1 4.3431 5.3559 -0.1947 37 1 3.7088 3.9051 5.4166 38 1 3.7495 5.4027 4.4532 39 1 5.9297 4.9213 5.6203 40 1 6.0896 5.0009 3.8490 41 1 5.7774 2.4410 5.4825 42 1 9.4445 3.8852 3.8180 43 1 8.1181 3.3790 2.7440 44 1 7.9666 4.8702 3.7039 45 1 7.7828 0.9825 4.3746 46 1 9.6582 -1.7428 4.8018 47 1 6.2999 2.9252 2.5142 48 1 6.2937 1.3345 3.3143 49 1 3.9415 1.6132 3.9430 50 1 4.1068 1.8852 2.1892 51 1 2.0905 1.5863 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267208629.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:12 Heat of formation + Delta-G solvation = -58.555157 kcal Electronic energy + Delta-G solvation = -31522.625374 eV Core-core repulsion = 27421.239452 eV Total energy + Delta-G solvation = -4101.385922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19151 -40.77892 -39.24662 -38.45187 -36.86316 -35.23493 -34.78449 -33.72657 -32.15331 -31.87745 -30.15777 -29.79871 -27.00977 -26.08155 -25.16648 -25.06309 -24.29112 -23.32062 -22.32137 -20.89324 -20.08382 -19.58694 -19.24472 -18.42605 -18.13192 -17.31250 -17.00141 -16.69079 -16.16438 -15.88918 -15.81287 -15.46055 -15.33424 -15.16921 -14.79893 -14.58558 -14.50733 -14.33207 -14.22675 -14.12248 -13.87421 -13.66202 -13.15064 -13.04667 -12.98325 -12.89822 -12.89011 -12.76383 -12.66436 -12.32651 -12.15561 -12.01780 -11.84324 -11.77279 -11.60638 -11.34122 -11.28927 -11.12387 -10.89710 -10.75812 -10.45123 -9.88514 -9.69209 -8.94808 -7.91010 -5.16868 -0.38889 -0.00461 1.46090 1.48792 1.48891 1.56943 1.85889 2.38321 2.58433 2.63531 3.22801 3.42656 3.61206 3.68390 3.75751 3.79651 3.81930 3.91527 4.02661 4.13984 4.23637 4.27338 4.30999 4.36709 4.49685 4.52312 4.53490 4.64629 4.68516 4.72103 4.77448 4.82355 4.86601 4.91249 4.93151 4.99073 5.07252 5.12859 5.17713 5.25614 5.32549 5.33063 5.36557 5.41417 5.48978 5.52964 5.58611 5.71260 6.22955 6.33030 6.44307 6.75795 6.97685 7.39689 8.17903 8.41166 9.32347 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.002785 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.770463 B =10051.087198 C =11245.433650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.077 4.077 3 C -0.137 4.137 4 C 0.142 3.858 5 N -0.522 5.522 6 C 0.332 3.668 7 O -0.487 6.487 8 C -0.203 4.203 9 C 0.568 3.432 10 O -0.565 6.565 11 N -0.594 5.594 12 C 0.114 3.886 13 C -0.118 4.118 14 C -0.080 4.080 15 C 0.172 3.828 16 H 0.039 0.961 17 C -0.157 4.157 18 N -0.734 5.734 19 C -0.234 4.234 20 H 0.070 0.930 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.964 3.036 24 H -0.289 1.289 25 H -0.297 1.297 26 H -0.274 1.274 27 C -0.121 4.121 28 C 0.106 3.894 29 C -0.031 4.031 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.194 0.806 36 H 0.415 0.585 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.028 0.972 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.376 0.624 46 H 0.249 0.751 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.664 3.445 -9.301 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.139 4.139 4 C -0.015 4.015 5 N -0.241 5.241 6 C 0.153 3.847 7 O -0.296 6.296 8 C -0.210 4.210 9 C 0.356 3.644 10 O -0.445 6.445 11 N -0.326 5.326 12 C -0.008 4.008 13 C -0.156 4.156 14 C -0.099 4.099 15 C 0.064 3.936 16 H 0.057 0.943 17 C -0.216 4.216 18 N -0.376 5.376 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.266 4.266 22 N -0.617 5.617 23 Si 0.794 3.206 24 H -0.216 1.216 25 H -0.224 1.224 26 H -0.200 1.200 27 C -0.159 4.159 28 C -0.016 4.016 29 C -0.056 4.056 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.211 0.789 36 H 0.275 0.725 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.210 0.790 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.107 0.893 50 H 0.115 0.885 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.161 4.690 -9.837 21.179 hybrid contribution 1.516 -0.841 1.042 2.022 sum -16.645 3.850 -8.795 19.215 Atomic orbital electron populations 1.21783 0.94045 1.02855 1.01930 1.20578 0.96396 0.89273 1.05267 1.21156 1.00370 0.99665 0.92678 1.23227 0.90826 0.87849 0.99628 1.67320 1.15523 1.10124 1.31087 1.19214 0.94215 0.84350 0.86873 1.84725 1.29208 1.20151 1.95550 1.20922 1.09728 0.96584 0.93717 1.18102 0.78708 0.84722 0.82866 1.90786 1.51776 1.22479 1.79433 1.48103 1.46742 1.17367 1.20368 1.21696 0.95496 0.97269 0.86299 1.21931 0.94083 0.96200 1.03422 1.21245 0.94681 0.96465 0.97505 1.20412 0.91978 0.85222 0.96000 0.94276 1.22383 0.99786 0.99759 0.99692 1.42665 1.23700 1.05965 1.65236 1.19574 0.98150 0.93529 1.25406 0.91246 1.25406 1.02103 0.96166 1.02889 1.69775 1.40968 1.00992 1.49993 0.85277 0.80326 0.77202 0.77798 1.21602 1.22387 1.19971 1.21858 0.94998 1.01321 0.97729 1.22100 0.93464 0.82282 1.03779 1.21859 0.92523 0.90609 1.00636 0.92487 0.90686 0.93349 0.88389 0.89422 0.78888 0.72465 0.89855 0.89708 0.89307 0.91420 0.91450 0.95316 0.93686 0.91471 0.79040 0.94166 0.91936 0.91611 0.89274 0.88539 0.81983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 71.98 0.71 -0.50 16 2 C -0.08 -0.63 6.08 29.85 0.18 -0.45 16 3 C -0.14 -1.90 5.14 -19.81 -0.10 -2.00 16 4 C 0.14 2.28 10.84 84.71 0.92 3.19 16 5 N -0.52 -12.11 10.37 -307.99 -3.19 -15.30 16 6 C 0.33 8.42 7.75 85.13 0.66 9.08 16 7 O -0.49 -12.65 12.74 -83.30 -1.06 -13.71 16 8 C -0.20 -4.75 4.93 -19.91 -0.10 -4.85 16 9 C 0.57 15.26 6.90 86.69 0.60 15.86 16 10 O -0.57 -19.50 16.16 -0.07 0.00 -19.50 16 11 N -0.59 -13.54 2.97 -822.69 -2.44 -15.99 16 12 C 0.11 2.50 6.42 86.36 0.55 3.06 16 13 C -0.12 -2.67 4.97 30.67 0.15 -2.52 16 14 C -0.08 -2.22 2.14 -10.77 -0.02 -2.24 16 15 C 0.17 6.20 2.72 45.00 0.12 6.32 16 16 H 0.04 1.47 8.08 -2.38 -0.02 1.45 16 17 C -0.16 -5.23 8.78 71.98 0.63 -4.60 16 18 N -0.73 -34.49 5.04 -322.93 -1.63 -36.12 16 19 C -0.23 -12.54 9.93 84.03 0.83 -11.70 16 20 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 21 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 22 N -0.97 -56.70 13.06 21.65 0.28 -56.42 16 23 Si 0.96 45.16 29.55 68.60 2.03 47.19 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 27 C -0.12 -3.18 4.81 30.67 0.15 -3.03 16 28 C 0.11 2.17 5.53 86.36 0.48 2.64 16 29 C -0.03 -0.52 7.21 22.72 0.16 -0.36 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.10 0.52 8.09 -2.39 -0.02 0.50 16 34 H 0.09 0.64 8.09 -2.38 -0.02 0.62 16 35 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.41 7.15 9.06 -74.06 -0.67 6.48 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 2.03 7.03 -2.39 -0.02 2.01 16 39 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.07 1.59 6.51 -2.39 -0.02 1.57 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.04 1.51 6.46 -2.39 -0.02 1.50 16 44 H 0.07 1.84 6.46 -2.39 -0.02 1.82 16 45 H 0.38 18.59 6.04 -92.71 -0.56 18.03 16 46 H 0.25 14.30 8.31 -92.71 -0.77 13.52 16 47 H 0.06 1.70 6.51 -2.38 -0.02 1.68 16 48 H 0.07 2.05 6.46 -2.38 -0.02 2.04 16 49 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 50 H 0.10 1.76 4.69 -2.39 -0.01 1.75 16 51 H 0.16 2.11 7.36 -2.91 -0.02 2.09 16 Total: -1.00 -73.58 400.95 0.11 -73.47 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: -0.27 Total: 32.08 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 6.40 Total: 4.30 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -6.99 Total: -123.83 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.06 Total: -33.21 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -73.58 0.11 -73.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267208629.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.912 kcal (2) G-P(sol) polarization free energy of solvation -73.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds