Wall clock time and date at job start Wed Apr 1 2020 05:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47058 * 2 1 4 4 C 1.38358 * 120.26905 * 89.99682 * 3 2 1 5 5 N 1.31877 * 121.18795 * 179.97438 * 4 3 2 6 6 C 1.32235 * 121.79801 * 0.02662 * 5 4 3 7 7 O 1.35433 * 119.80131 * 179.97438 * 6 5 4 8 8 C 1.40280 * 120.40009 * 0.25272 * 6 5 4 9 9 C 1.47525 * 120.59635 * 179.72097 * 8 6 5 10 10 O 1.21590 * 119.99902 * 0.02562 * 9 8 6 11 11 N 1.34778 * 120.00007 * 179.97438 * 9 8 6 12 12 C 1.46505 * 119.99722 * 174.99219 * 11 9 8 13 13 H 1.09003 * 109.46983 * 4.82617 * 12 11 9 14 14 C 1.53005 * 109.46790 * 244.82779 * 12 11 9 15 15 N 1.46503 * 109.47082 * 55.00318 * 14 12 11 16 16 C 1.36930 * 119.99816 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00423 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00183 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99623 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00298 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46804 * 120.00355 * 20 18 16 23 23 H 1.48497 * 109.47131 * 240.00257 * 20 18 16 24 24 C 1.53003 * 109.46865 * 124.83246 * 12 11 9 25 25 C 1.54257 * 110.03401 * 57.05677 * 24 12 11 26 26 C 1.54895 * 104.19685 * 217.10491 * 25 24 12 27 27 C 1.54887 * 102.74524 * 37.94146 * 26 25 24 28 28 C 1.53873 * 110.02769 * 299.88898 * 24 12 11 29 29 C 1.38325 * 120.27449 * 270.02424 * 3 2 1 30 30 H 1.09006 * 109.46934 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47150 * 299.99441 * 1 2 3 32 32 H 1.09004 * 109.47161 * 60.00093 * 1 2 3 33 33 H 1.09003 * 109.47230 * 240.00039 * 2 1 3 34 34 H 1.08995 * 109.47182 * 120.00098 * 2 1 3 35 35 H 1.08001 * 119.40721 * 0.02562 * 4 3 2 36 36 H 0.96698 * 114.00065 * 89.99808 * 7 6 5 37 37 H 0.96996 * 119.99761 * 354.98836 * 11 9 8 38 38 H 1.09001 * 109.46565 * 175.00268 * 14 12 11 39 39 H 1.09003 * 109.46974 * 295.00471 * 14 12 11 40 40 H 0.96998 * 119.99904 * 359.97438 * 15 14 12 41 41 H 0.97003 * 120.00041 * 179.97438 * 19 18 16 42 42 H 1.09004 * 110.01076 * 178.50392 * 24 12 11 43 43 H 1.08998 * 110.48919 * 335.78777 * 25 24 12 44 44 H 1.09002 * 110.48517 * 98.42820 * 25 24 12 45 45 H 1.08998 * 110.75150 * 279.62727 * 26 25 24 46 46 H 1.09000 * 110.75448 * 156.25800 * 26 25 24 47 47 H 1.09000 * 110.48492 * 203.37374 * 27 26 25 48 48 H 1.09003 * 110.59300 * 80.79695 * 27 26 25 49 49 H 1.09005 * 110.03438 * 238.56823 * 28 24 12 50 50 H 1.08992 * 110.03723 * 359.95707 * 28 24 12 51 51 H 1.08001 * 120.82586 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2647 2.0784 1.1950 5 7 2.7047 3.3214 1.2161 6 6 2.9430 3.9952 0.1035 7 8 3.3939 5.2704 0.1724 8 6 2.7261 3.3991 -1.1476 9 6 2.9847 4.1489 -2.3916 10 8 3.3900 5.2940 -2.3380 11 7 2.7727 3.5643 -3.5873 12 6 2.9236 4.3418 -4.8198 13 1 3.2914 5.3389 -4.5776 14 6 1.5683 4.4544 -5.5209 15 7 0.5836 5.0160 -4.5928 16 6 -0.7087 5.2108 -5.0013 17 1 -1.0023 4.9500 -6.0074 18 6 -1.6419 5.7425 -4.1218 19 7 -1.2843 6.0598 -2.8955 20 14 -3.4048 6.0089 -4.6792 21 1 -3.5481 5.5750 -6.0920 22 1 -4.3204 5.2136 -3.8222 23 1 -3.7474 7.4494 -4.5660 24 6 3.9202 3.6413 -5.7457 25 6 3.4486 2.2019 -6.0376 26 6 4.7572 1.3741 -6.0773 27 6 5.6023 2.0165 -4.9494 28 6 5.2894 3.5235 -5.0537 29 6 2.2643 2.0785 -1.1946 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0833 1.5641 2.1272 36 1 4.3577 5.3463 0.1925 37 1 2.5202 2.6288 -3.6317 38 1 1.6618 5.1060 -6.3897 39 1 1.2421 3.4651 -5.8420 40 1 0.8472 5.2499 -3.6891 41 1 -1.9363 6.4317 -2.2811 42 1 4.0192 4.1988 -6.6772 43 1 2.7957 1.8454 -5.2409 44 1 2.9384 2.1553 -6.9997 45 1 5.2537 1.4826 -7.0416 46 1 4.5572 0.3248 -5.8604 47 1 6.6638 1.8346 -5.1173 48 1 5.2993 1.6305 -3.9761 49 1 6.0533 4.0229 -5.6499 50 1 5.2443 3.9660 -4.0587 51 1 2.0904 1.5864 -2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270449454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:13 Heat of formation + Delta-G solvation = -44.682866 kcal Electronic energy + Delta-G solvation = -32254.122892 eV Core-core repulsion = 28153.338518 eV Total energy + Delta-G solvation = -4100.784374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84122 -39.59367 -37.87865 -37.13817 -35.13744 -34.28694 -33.52580 -32.47424 -30.86844 -29.63463 -29.06397 -28.72473 -26.26439 -24.78757 -24.04216 -23.33636 -22.15457 -21.48774 -20.66657 -20.02863 -19.25949 -18.68998 -17.31090 -17.18216 -17.00740 -15.90573 -15.78867 -15.63286 -15.03597 -14.64903 -14.53066 -14.34129 -14.05300 -13.91507 -13.44237 -13.35403 -13.32601 -13.21030 -13.10562 -12.96180 -12.73119 -12.11868 -12.02899 -11.77814 -11.71734 -11.40934 -11.16033 -11.14469 -11.09535 -11.04168 -10.82069 -10.68046 -10.60860 -10.48243 -10.35138 -9.99925 -9.84196 -9.82290 -9.66630 -9.23224 -8.83705 -8.76852 -8.53850 -6.85840 -5.68443 -2.98720 0.67883 1.09694 3.08792 3.39731 3.45631 3.50438 3.53569 3.66063 3.91944 4.48317 4.54298 4.61846 4.63033 4.66142 4.72516 4.76288 4.77795 5.07850 5.19622 5.22432 5.26123 5.38674 5.46393 5.46764 5.58525 5.59654 5.61509 5.64391 5.68459 5.69970 5.77313 5.82475 5.83178 5.90031 5.94430 6.04935 6.11969 6.13625 6.15187 6.23954 6.28328 6.34140 6.41904 6.46542 6.51621 6.72371 6.98832 7.63283 7.73896 7.82604 7.91508 8.48056 8.59378 9.59570 10.18695 10.53369 11.53041 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006309 B = 0.005069 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4437.347234 B = 5522.348198 C = 7700.758524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.074 4.074 3 C -0.156 4.156 4 C 0.144 3.856 5 N -0.506 5.506 6 C 0.365 3.635 7 O -0.454 6.454 8 C -0.186 4.186 9 C 0.568 3.432 10 O -0.517 6.517 11 N -0.704 5.704 12 C 0.138 3.862 13 H 0.102 0.898 14 C 0.142 3.858 15 N -0.728 5.728 16 C -0.242 4.242 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.925 5.925 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.292 1.292 24 C -0.098 4.098 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.118 4.118 29 C -0.025 4.025 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.399 0.601 37 H 0.393 0.607 38 H 0.027 0.973 39 H 0.022 0.978 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.341 -16.047 1.878 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.158 4.158 4 C -0.014 4.014 5 N -0.225 5.225 6 C 0.185 3.815 7 O -0.260 6.260 8 C -0.193 4.193 9 C 0.354 3.646 10 O -0.393 6.393 11 N -0.356 5.356 12 C 0.034 3.966 13 H 0.120 0.880 14 C 0.013 3.987 15 N -0.373 5.373 16 C -0.373 4.373 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.573 5.573 20 Si 0.735 3.265 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.118 4.118 25 C -0.155 4.155 26 C -0.162 4.162 27 C -0.159 4.159 28 C -0.156 4.156 29 C -0.051 4.051 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.178 0.822 36 H 0.258 0.742 37 H 0.228 0.772 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.221 0.779 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.059 -14.536 2.562 20.385 hybrid contribution -0.996 -0.554 -0.761 1.371 sum 13.063 -15.090 1.801 20.040 Atomic orbital electron populations 1.21804 0.94237 1.01903 1.02984 1.20431 0.96496 0.91181 1.03136 1.20801 1.02661 0.98641 0.93704 1.22552 0.92322 0.88821 0.97670 1.67296 1.15055 1.08581 1.31524 1.19169 0.91750 0.84232 0.86320 1.84816 1.27159 1.18746 1.95300 1.21172 1.07666 0.95324 0.95099 1.17671 0.77868 0.86173 0.82918 1.90808 1.44919 1.16803 1.86770 1.45681 1.70406 1.14133 1.05347 1.21369 0.95844 0.96131 0.83282 0.88028 1.21043 0.87810 0.96686 0.93131 1.42317 1.06356 1.75844 1.12790 1.19223 0.86024 1.35201 0.96879 0.91283 1.24762 0.98109 1.01975 0.96024 1.69709 1.33606 1.48956 1.05055 0.86170 0.85328 0.77499 0.77503 1.20624 1.21994 1.21877 1.22092 0.94454 0.96550 0.98669 1.22415 0.96963 0.94453 1.01719 1.22502 0.96217 0.98766 0.98696 1.22324 0.99248 0.95677 0.98662 1.22152 0.96164 0.96126 1.01130 1.21569 0.92401 0.92392 0.98725 0.92180 0.92370 0.91993 0.90726 0.90632 0.82240 0.74209 0.77168 0.95551 0.96046 0.77903 0.93609 0.89874 0.91735 0.91322 0.91680 0.91940 0.92248 0.92061 0.92171 0.91417 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 37.16 0.37 -1.02 16 2 C -0.07 -0.60 6.08 -27.88 -0.17 -0.77 16 3 C -0.16 -1.76 5.14 -104.55 -0.54 -2.29 16 4 C 0.14 1.75 10.84 -17.49 -0.19 1.56 16 5 N -0.51 -7.84 10.37 -12.98 -0.13 -7.98 16 6 C 0.37 6.19 7.77 -16.61 -0.13 6.06 16 7 O -0.45 -7.89 11.66 -39.76 -0.46 -8.35 16 8 C -0.19 -3.02 5.90 -104.69 -0.62 -3.64 16 9 C 0.57 10.23 6.87 -12.47 -0.09 10.14 16 10 O -0.52 -11.00 14.53 -16.49 -0.24 -11.24 16 11 N -0.70 -10.95 3.70 -54.84 -0.20 -11.15 16 12 C 0.14 2.25 2.04 -67.92 -0.14 2.11 16 13 H 0.10 1.93 6.91 -51.93 -0.36 1.58 16 14 C 0.14 2.81 5.84 -4.04 -0.02 2.79 16 15 N -0.73 -18.91 5.43 -59.90 -0.33 -19.23 16 16 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -29.40 13.06 55.49 0.72 -28.68 16 20 Si 0.90 23.02 29.55 -169.99 -5.02 17.99 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 C -0.10 -1.19 2.82 -89.51 -0.25 -1.45 16 25 C -0.12 -1.25 5.12 -25.07 -0.13 -1.38 16 26 C -0.12 -1.11 6.91 -24.74 -0.17 -1.28 16 27 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 28 C -0.12 -1.33 6.19 -25.61 -0.16 -1.49 16 29 C -0.02 -0.32 9.31 -38.89 -0.36 -0.68 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.40 4.86 9.06 45.56 0.41 5.27 16 37 H 0.39 5.25 5.07 -40.82 -0.21 5.04 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.41 7.13 -51.93 -0.37 0.04 16 40 H 0.39 11.00 6.80 -40.82 -0.28 10.72 16 41 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.71 5.96 -51.93 -0.31 0.40 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.89 7.12 -51.93 -0.37 0.53 16 51 H 0.14 1.49 6.53 -52.49 -0.34 1.15 16 LS Contribution 407.20 15.07 6.14 6.14 Total: -1.00 -36.61 407.20 -9.82 -46.44 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -7.28 Total: 16.23 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -3.01 Total: -0.18 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: 0.06 Total: -67.04 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.70 Total: -19.58 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.61 -9.82 -46.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270449454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.756 kcal (2) G-P(sol) polarization free energy of solvation -36.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds