Wall clock time and date at job start Wed Apr 1 2020 05:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47058 * 2 1 4 4 C 1.38358 * 120.26905 * 89.99682 * 3 2 1 5 5 N 1.31877 * 121.18795 * 179.97438 * 4 3 2 6 6 C 1.32235 * 121.79801 * 0.02662 * 5 4 3 7 7 O 1.35433 * 119.80131 * 179.97438 * 6 5 4 8 8 C 1.40280 * 120.40009 * 0.25272 * 6 5 4 9 9 C 1.47525 * 120.59635 * 179.72097 * 8 6 5 10 10 O 1.21590 * 119.99902 * 0.02562 * 9 8 6 11 11 N 1.34778 * 120.00007 * 179.97438 * 9 8 6 12 12 C 1.46505 * 119.99722 * 174.99219 * 11 9 8 13 13 H 1.09003 * 109.46983 * 4.82617 * 12 11 9 14 14 C 1.53005 * 109.46790 * 244.82779 * 12 11 9 15 15 N 1.46503 * 109.47082 * 55.00318 * 14 12 11 16 16 C 1.36930 * 119.99816 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00423 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00183 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99623 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00298 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.46938 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46804 * 120.00355 * 20 18 16 23 23 H 1.48497 * 109.47131 * 240.00257 * 20 18 16 24 24 C 1.53003 * 109.46865 * 124.83246 * 12 11 9 25 25 C 1.54257 * 110.03401 * 57.05677 * 24 12 11 26 26 C 1.54895 * 104.19685 * 217.10491 * 25 24 12 27 27 C 1.54887 * 102.74524 * 37.94146 * 26 25 24 28 28 C 1.53873 * 110.02769 * 299.88898 * 24 12 11 29 29 C 1.38325 * 120.27449 * 270.02424 * 3 2 1 30 30 H 1.09006 * 109.46934 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47150 * 299.99441 * 1 2 3 32 32 H 1.09004 * 109.47161 * 60.00093 * 1 2 3 33 33 H 1.09003 * 109.47230 * 240.00039 * 2 1 3 34 34 H 1.08995 * 109.47182 * 120.00098 * 2 1 3 35 35 H 1.08001 * 119.40721 * 0.02562 * 4 3 2 36 36 H 0.96698 * 114.00065 * 89.99808 * 7 6 5 37 37 H 0.96996 * 119.99761 * 354.98836 * 11 9 8 38 38 H 1.09001 * 109.46565 * 175.00268 * 14 12 11 39 39 H 1.09003 * 109.46974 * 295.00471 * 14 12 11 40 40 H 0.96998 * 119.99904 * 359.97438 * 15 14 12 41 41 H 0.97003 * 120.00041 * 179.97438 * 19 18 16 42 42 H 1.09004 * 110.01076 * 178.50392 * 24 12 11 43 43 H 1.08998 * 110.48919 * 335.78777 * 25 24 12 44 44 H 1.09002 * 110.48517 * 98.42820 * 25 24 12 45 45 H 1.08998 * 110.75150 * 279.62727 * 26 25 24 46 46 H 1.09000 * 110.75448 * 156.25800 * 26 25 24 47 47 H 1.09000 * 110.48492 * 203.37374 * 27 26 25 48 48 H 1.09003 * 110.59300 * 80.79695 * 27 26 25 49 49 H 1.09005 * 110.03438 * 238.56823 * 28 24 12 50 50 H 1.08992 * 110.03723 * 359.95707 * 28 24 12 51 51 H 1.08001 * 120.82586 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2647 2.0784 1.1950 5 7 2.7047 3.3214 1.2161 6 6 2.9430 3.9952 0.1035 7 8 3.3939 5.2704 0.1724 8 6 2.7261 3.3991 -1.1476 9 6 2.9847 4.1489 -2.3916 10 8 3.3900 5.2940 -2.3380 11 7 2.7727 3.5643 -3.5873 12 6 2.9236 4.3418 -4.8198 13 1 3.2914 5.3389 -4.5776 14 6 1.5683 4.4544 -5.5209 15 7 0.5836 5.0160 -4.5928 16 6 -0.7087 5.2108 -5.0013 17 1 -1.0023 4.9500 -6.0074 18 6 -1.6419 5.7425 -4.1218 19 7 -1.2843 6.0598 -2.8955 20 14 -3.4048 6.0089 -4.6792 21 1 -3.5481 5.5750 -6.0920 22 1 -4.3204 5.2136 -3.8222 23 1 -3.7474 7.4494 -4.5660 24 6 3.9202 3.6413 -5.7457 25 6 3.4486 2.2019 -6.0376 26 6 4.7572 1.3741 -6.0773 27 6 5.6023 2.0165 -4.9494 28 6 5.2894 3.5235 -5.0537 29 6 2.2643 2.0785 -1.1946 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0833 1.5641 2.1272 36 1 4.3577 5.3463 0.1925 37 1 2.5202 2.6288 -3.6317 38 1 1.6618 5.1060 -6.3897 39 1 1.2421 3.4651 -5.8420 40 1 0.8472 5.2499 -3.6891 41 1 -1.9363 6.4317 -2.2811 42 1 4.0192 4.1988 -6.6772 43 1 2.7957 1.8454 -5.2409 44 1 2.9384 2.1553 -6.9997 45 1 5.2537 1.4826 -7.0416 46 1 4.5572 0.3248 -5.8604 47 1 6.6638 1.8346 -5.1173 48 1 5.2993 1.6305 -3.9761 49 1 6.0533 4.0229 -5.6499 50 1 5.2443 3.9660 -4.0587 51 1 2.0904 1.5864 -2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270449454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:12 Heat of formation + Delta-G solvation = -71.292743 kcal Electronic energy + Delta-G solvation = -32255.276783 eV Core-core repulsion = 28153.338518 eV Total energy + Delta-G solvation = -4101.938265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.01536 -40.77989 -39.03827 -38.31546 -36.76038 -35.25134 -35.12159 -33.81056 -32.63149 -30.94739 -30.02940 -29.59118 -27.78597 -26.02163 -25.08516 -24.96057 -23.42295 -22.68623 -21.77748 -21.02556 -20.41804 -19.89631 -19.18737 -18.49636 -18.17472 -17.10135 -17.00448 -16.74714 -16.55478 -16.02422 -15.71390 -15.65290 -15.22955 -15.04121 -15.00869 -14.78799 -14.36339 -14.33416 -14.16595 -13.97440 -13.95181 -13.65119 -13.13806 -13.02313 -12.99123 -12.82026 -12.79769 -12.34812 -12.13629 -12.00623 -11.90356 -11.83843 -11.83538 -11.66632 -11.55453 -11.44958 -11.37200 -11.13684 -10.96113 -10.95278 -10.43453 -10.01107 -9.74017 -9.00974 -7.94399 -5.24972 -0.44733 0.03885 1.42646 1.44839 1.54829 1.82296 2.13964 2.53452 2.54313 2.74684 3.38403 3.48739 3.55556 3.67331 3.73055 3.74000 3.81768 3.86270 4.12317 4.19635 4.25963 4.29362 4.40129 4.51066 4.53640 4.57492 4.62033 4.69483 4.71258 4.78797 4.82114 4.88229 4.88946 4.91031 4.92547 5.07667 5.13689 5.14873 5.17915 5.31803 5.33834 5.38143 5.39953 5.44954 5.49676 5.51080 5.55164 5.62549 6.24002 6.48236 6.58748 6.81529 7.25307 7.31055 8.08779 8.30681 9.28288 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006309 B = 0.005069 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4437.347234 B = 5522.348198 C = 7700.758524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.069 4.069 3 C -0.143 4.143 4 C 0.144 3.856 5 N -0.526 5.526 6 C 0.339 3.661 7 O -0.480 6.480 8 C -0.211 4.211 9 C 0.563 3.437 10 O -0.562 6.562 11 N -0.690 5.690 12 C 0.149 3.851 13 H 0.067 0.933 14 C 0.140 3.860 15 N -0.743 5.743 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.079 4.079 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.260 1.260 22 H -0.293 1.293 23 H -0.298 1.298 24 C -0.091 4.091 25 C -0.118 4.118 26 C -0.114 4.114 27 C -0.117 4.117 28 C -0.116 4.116 29 C -0.026 4.026 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.199 0.801 36 H 0.412 0.588 37 H 0.405 0.595 38 H 0.028 0.972 39 H 0.042 0.958 40 H 0.370 0.630 41 H 0.246 0.754 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.068 0.932 50 H 0.041 0.959 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.307 -19.837 0.718 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 C -0.145 4.145 4 C -0.014 4.014 5 N -0.245 5.245 6 C 0.160 3.840 7 O -0.289 6.289 8 C -0.218 4.218 9 C 0.350 3.650 10 O -0.442 6.442 11 N -0.342 5.342 12 C 0.044 3.956 13 H 0.085 0.915 14 C 0.012 3.988 15 N -0.386 5.386 16 C -0.372 4.372 17 H 0.099 0.901 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.220 1.220 23 H -0.226 1.226 24 C -0.110 4.110 25 C -0.156 4.156 26 C -0.152 4.152 27 C -0.155 4.155 28 C -0.154 4.154 29 C -0.052 4.052 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.215 0.785 36 H 0.273 0.727 37 H 0.243 0.757 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.202 0.798 41 H 0.055 0.945 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.060 0.940 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 14.051 -18.386 1.331 23.178 hybrid contribution -0.948 0.567 -0.403 1.176 sum 13.103 -17.819 0.928 22.137 Atomic orbital electron populations 1.21816 0.94952 1.02847 1.01436 1.20542 0.95537 0.88954 1.05620 1.21207 1.00627 1.00135 0.92546 1.23309 0.90556 0.87782 0.99728 1.67323 1.16057 1.10108 1.31023 1.19380 0.93085 0.84324 0.87203 1.84749 1.28679 1.20016 1.95461 1.21127 1.09894 0.96833 0.93910 1.18060 0.77116 0.85814 0.84024 1.90768 1.47159 1.18823 1.87453 1.45529 1.69592 1.14456 1.04580 1.21177 0.94928 0.95522 0.84020 0.91494 1.21271 0.88247 0.96898 0.92341 1.42563 1.06842 1.76190 1.12980 1.19696 0.87071 1.33360 0.97060 0.90129 1.25631 1.02544 1.02799 0.96165 1.69915 1.34710 1.50975 1.06516 0.85062 0.79998 0.76669 0.77973 1.18411 1.22047 1.22610 1.22054 0.93727 0.97506 0.97747 1.22432 0.98086 0.93191 1.01843 1.22462 0.94704 0.99169 0.98843 1.22308 1.00316 0.93827 0.99041 1.22111 0.95775 0.97863 0.99624 1.21867 0.91597 0.91103 1.00588 0.90018 0.93052 0.94454 0.88846 0.87639 0.78456 0.72693 0.75727 0.95437 0.94010 0.79796 0.94475 0.89179 0.92046 0.90722 0.90675 0.90287 0.90879 0.92181 0.91318 0.94043 0.82332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.89 71.98 0.71 -1.67 16 2 C -0.07 -0.86 6.08 29.85 0.18 -0.67 16 3 C -0.14 -2.93 5.14 -19.82 -0.10 -3.03 16 4 C 0.14 3.27 10.84 84.71 0.92 4.18 16 5 N -0.53 -16.52 10.37 -307.99 -3.19 -19.71 16 6 C 0.34 12.14 7.77 85.13 0.66 12.80 16 7 O -0.48 -18.24 11.66 -66.47 -0.77 -19.01 16 8 C -0.21 -7.15 5.90 -19.91 -0.12 -7.27 16 9 C 0.56 21.54 6.87 86.69 0.60 22.14 16 10 O -0.56 -26.04 14.53 16.82 0.24 -25.79 16 11 N -0.69 -22.05 3.70 -445.68 -1.65 -23.69 16 12 C 0.15 4.96 2.04 44.99 0.09 5.05 16 13 H 0.07 2.73 6.91 -2.39 -0.02 2.71 16 14 C 0.14 5.53 5.84 86.38 0.50 6.03 16 15 N -0.74 -39.40 5.43 -343.43 -1.87 -41.26 16 16 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 17 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 18 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 19 N -0.97 -63.73 13.06 21.65 0.28 -63.44 16 20 Si 0.97 47.86 29.55 68.60 2.03 49.88 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 23 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 24 C -0.09 -2.13 2.82 -10.07 -0.03 -2.16 16 25 C -0.12 -2.21 5.12 31.67 0.16 -2.05 16 26 C -0.11 -1.65 6.91 31.89 0.22 -1.43 16 27 C -0.12 -1.94 6.83 31.67 0.22 -1.73 16 28 C -0.12 -2.53 6.19 31.32 0.19 -2.34 16 29 C -0.03 -0.65 9.31 22.71 0.21 -0.44 16 30 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.09 0.88 8.09 -2.39 -0.02 0.87 16 34 H 0.11 0.77 8.09 -2.39 -0.02 0.75 16 35 H 0.20 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.41 11.48 9.06 -74.06 -0.67 10.81 16 37 H 0.40 10.66 5.07 -92.71 -0.47 10.19 16 38 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.04 1.52 7.13 -2.39 -0.02 1.50 16 40 H 0.37 22.00 6.80 -92.71 -0.63 21.37 16 41 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.06 1.19 5.96 -2.39 -0.01 1.18 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.07 1.37 8.14 -2.38 -0.02 1.36 16 50 H 0.04 1.13 7.12 -2.39 -0.02 1.12 16 51 H 0.16 3.17 6.53 -2.91 -0.02 3.15 16 Total: -1.00 -83.72 407.20 -0.01 -83.73 By element: Atomic # 1 Polarization: 49.93 SS G_CDS: -0.80 Total: 49.13 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 5.73 Total: 10.18 kcal Atomic # 7 Polarization: -141.68 SS G_CDS: -6.43 Total: -148.11 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -0.53 Total: -44.80 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.88 kcal Total: -83.72 -0.01 -83.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270449454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.436 kcal (2) G-P(sol) polarization free energy of solvation -83.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds