Wall clock time and date at job start Wed Apr 1 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50693 * 109.47340 * 2 1 4 4 C 1.41382 * 126.80144 * 125.25855 * 3 2 1 5 5 C 1.35449 * 103.98637 * 180.16923 * 4 3 2 6 6 C 1.50702 * 126.77958 * 179.90634 * 5 4 3 7 7 N 1.46908 * 109.46990 * 89.70631 * 6 5 4 8 8 C 1.48070 * 110.99735 * 69.57930 * 7 6 5 9 9 C 1.54975 * 104.82219 * 146.02010 * 8 7 6 10 10 C 1.55321 * 101.73722 * 323.34188 * 9 8 7 11 11 C 1.46651 * 110.99749 * 190.00116 * 7 6 5 12 12 C 1.53879 * 110.90459 * 357.85820 * 11 7 6 13 13 C 1.54647 * 101.59579 * 96.52206 * 12 11 7 14 14 N 1.46841 * 105.55930 * 24.56149 * 13 12 11 15 15 C 1.46497 * 124.36375 * 163.35339 * 14 13 12 16 16 C 1.53001 * 109.47547 * 270.19760 * 15 14 13 17 17 C 1.50696 * 109.47518 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99780 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00325 * 180.02562 * 17 16 15 20 20 N 1.31505 * 120.00222 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99568 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47453 * 90.00156 * 21 19 17 23 23 H 1.48502 * 109.46986 * 210.00042 * 21 19 17 24 24 H 1.48501 * 109.47432 * 330.00014 * 21 19 17 25 25 C 1.34658 * 111.27145 * 343.50803 * 14 13 12 26 26 O 1.21283 * 125.07959 * 180.71764 * 25 14 13 27 27 O 1.34046 * 106.44699 * 359.64360 * 5 4 3 28 28 N 1.20919 * 111.56501 * 0.24251 * 27 5 4 29 29 H 1.09004 * 109.47525 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47315 * 299.99477 * 1 2 3 31 31 H 1.09004 * 109.47308 * 59.99890 * 1 2 3 32 32 H 1.09009 * 109.46960 * 240.00162 * 2 1 3 33 33 H 1.08995 * 109.47438 * 120.00952 * 2 1 3 34 34 H 1.08001 * 128.00562 * 0.07297 * 4 3 2 35 35 H 1.09003 * 109.47007 * 329.71137 * 6 5 4 36 36 H 1.08996 * 109.47668 * 209.70463 * 6 5 4 37 37 H 1.09003 * 110.37082 * 264.85965 * 8 7 6 38 38 H 1.09003 * 110.36816 * 27.18218 * 8 7 6 39 39 H 1.08999 * 110.97348 * 81.45103 * 9 8 7 40 40 H 1.08997 * 110.97700 * 205.19478 * 9 8 7 41 41 H 1.08997 * 110.74683 * 276.70634 * 10 9 8 42 42 H 1.09002 * 110.74491 * 153.36071 * 10 9 8 43 43 H 1.08997 * 111.00186 * 214.60210 * 12 11 7 44 44 H 1.09000 * 111.00150 * 338.40543 * 12 11 7 45 45 H 1.08994 * 110.23729 * 143.77703 * 13 12 11 46 46 H 1.08992 * 110.24044 * 265.76686 * 13 12 11 47 47 H 1.09001 * 109.47486 * 30.19584 * 15 14 13 48 48 H 1.09000 * 109.47596 * 150.19665 * 15 14 13 49 49 H 1.08995 * 109.46864 * 300.00052 * 16 15 14 50 50 H 1.09000 * 109.46750 * 59.99387 * 16 15 14 51 51 H 0.96998 * 120.00560 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9308 2.0014 0.9244 5 6 3.0582 3.2806 0.4978 6 6 3.9037 4.3602 1.1227 7 7 5.2481 4.3334 0.5309 8 6 5.2164 4.7861 -0.8785 9 6 6.5619 5.5262 -1.0875 10 6 6.7553 6.2243 0.2865 11 6 6.1660 5.2043 1.2722 12 6 5.4335 5.9270 2.4164 13 6 5.7611 5.0140 3.6208 14 7 7.0087 4.3258 3.2656 15 6 7.8744 3.6359 4.2250 16 6 8.9082 4.6189 4.7781 17 6 9.7992 3.9090 5.7645 18 1 9.6435 2.8615 5.9762 19 6 10.8126 4.5970 6.3976 20 7 11.5898 3.9776 7.2588 21 14 11.0815 6.4090 6.0319 22 1 10.2749 7.2286 6.9714 23 1 12.5200 6.7390 6.1966 24 1 10.6635 6.6999 4.6369 25 6 7.2560 4.4136 1.9449 26 8 8.2116 3.9242 1.3807 27 8 2.2882 3.3952 -0.5935 28 7 1.7282 2.3555 -0.8535 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8898 34 1 3.4045 1.5336 1.7748 35 1 3.9761 4.1889 2.1968 36 1 3.4456 5.3322 0.9398 37 1 5.1456 3.9306 -1.5503 38 1 4.3802 5.4664 -1.0398 39 1 7.3691 4.8204 -1.2835 40 1 6.4835 6.2590 -1.8905 41 1 6.2014 7.1623 0.3243 42 1 7.8132 6.3908 0.4895 43 1 5.8348 6.9294 2.5654 44 1 4.3597 5.9618 2.2324 45 1 5.9006 5.6128 4.5208 46 1 4.9632 4.2869 3.7707 47 1 7.2704 3.2450 5.0439 48 1 8.3863 2.8129 3.7262 49 1 9.5122 5.0097 3.9593 50 1 8.3964 5.4419 5.2769 51 1 12.3030 4.4615 7.7039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272570872.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:24 Heat of formation + Delta-G solvation = 45.072737 kcal Electronic energy + Delta-G solvation = -31569.216050 eV Core-core repulsion = 27472.323771 eV Total energy + Delta-G solvation = -4096.892279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.11480 -41.36603 -38.09412 -36.11466 -35.74411 -34.06672 -33.69005 -32.04093 -31.69238 -30.75019 -29.63920 -27.97895 -26.48769 -25.20131 -24.62812 -23.66902 -23.20983 -21.79843 -21.43945 -20.41186 -19.67747 -18.74534 -17.84047 -17.58407 -17.05525 -16.84856 -16.17568 -15.49391 -15.36154 -15.10944 -14.79247 -14.62859 -14.27001 -14.15180 -13.95371 -13.70683 -13.59839 -13.19169 -13.12764 -12.94363 -12.81639 -12.65625 -12.62282 -12.24532 -12.10519 -11.90822 -11.79394 -11.67804 -11.47418 -11.25662 -11.10524 -11.07957 -11.00489 -10.90170 -10.50586 -10.21039 -10.06077 -9.93223 -9.64275 -9.62749 -9.28981 -8.58379 -8.55820 -8.18392 -6.08556 -4.07588 1.20175 2.01992 2.69261 2.90658 3.26903 3.33329 3.35829 3.40660 3.86037 3.92770 4.02807 4.07126 4.31919 4.41927 4.43983 4.60401 4.64594 4.74620 4.81080 4.85540 4.89377 4.95951 5.01708 5.02507 5.08130 5.25540 5.26429 5.33857 5.37761 5.43491 5.49101 5.51224 5.60216 5.64323 5.66106 5.69462 5.75937 5.76668 5.86016 5.91757 5.93761 6.09855 6.29787 6.52913 6.54473 6.57608 6.81452 7.13483 7.32379 7.60654 7.73103 8.06354 8.45235 8.59238 8.94673 9.53240 11.04537 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.002634 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.906745 B =10626.219972 C =11729.230274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C 0.018 3.982 4 C -0.208 4.208 5 C -0.024 4.024 6 C 0.124 3.876 7 N -0.500 5.500 8 C 0.043 3.957 9 C -0.127 4.127 10 C -0.120 4.120 11 C 0.071 3.929 12 C -0.165 4.165 13 C 0.102 3.898 14 N -0.613 5.613 15 C 0.138 3.862 16 C -0.024 4.024 17 C -0.521 4.521 18 H 0.074 0.926 19 C 0.070 3.930 20 N -0.900 5.900 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 C 0.539 3.461 26 O -0.517 6.517 27 O 0.097 5.903 28 N -0.364 5.364 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.171 0.829 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.020 0.980 50 H 0.012 0.988 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.135 1.926 -14.762 27.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.230 4.230 5 C -0.087 4.087 6 C -0.004 4.004 7 N -0.225 5.225 8 C -0.084 4.084 9 C -0.165 4.165 10 C -0.159 4.159 11 C -0.022 4.022 12 C -0.203 4.203 13 C -0.022 4.022 14 N -0.347 5.347 15 C 0.018 3.982 16 C -0.062 4.062 17 C -0.560 4.560 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.539 5.539 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.191 1.191 25 C 0.323 3.677 26 O -0.391 6.391 27 O 0.030 5.970 28 N -0.069 5.069 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.189 0.811 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.038 0.962 50 H 0.030 0.970 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.024 1.156 -15.927 28.020 hybrid contribution 0.436 1.478 0.783 1.728 sum -22.588 2.634 -15.144 27.322 Atomic orbital electron populations 1.21727 0.94128 1.02171 1.02498 1.19956 0.96486 0.88134 1.03794 1.23593 0.98709 0.98283 0.93495 1.22445 1.02922 0.93477 1.04156 1.24252 0.96777 0.97732 0.89982 1.21004 0.86900 0.93480 0.99004 1.63236 1.05894 1.50991 1.02409 1.23206 0.97617 0.98967 0.88601 1.22744 0.97521 0.99508 0.96689 1.22635 1.02624 0.96722 0.93871 1.21921 0.93626 0.92310 0.94357 1.23377 1.02217 1.00144 0.94573 1.22062 0.86967 0.94981 0.98161 1.48565 1.23475 1.54435 1.08221 1.21579 0.91302 0.95526 0.89781 1.19893 0.94446 0.95395 0.96495 1.20956 1.13876 0.98447 1.22676 0.90790 1.24978 0.95441 0.98242 0.94546 1.69898 1.19388 1.36705 1.27888 0.86775 0.77420 0.85782 0.79321 1.20313 1.21265 1.19065 1.20004 0.85569 0.79881 0.82201 1.90688 1.31597 1.48185 1.68639 1.84799 1.45163 1.29612 1.37378 1.73786 1.17485 0.93335 1.22260 0.91787 0.92512 0.92185 0.89947 0.89469 0.81108 0.86622 0.91447 0.89940 0.92731 0.89738 0.90399 0.90349 0.89645 0.88891 0.88202 0.89829 0.91448 0.91003 0.90444 0.96172 0.96995 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.88 37.15 0.37 -0.65 16 2 C -0.05 -0.35 6.53 -27.89 -0.18 -0.53 16 3 C 0.02 0.19 6.59 -82.10 -0.54 -0.36 16 4 C -0.21 -2.08 11.05 -39.38 -0.44 -2.51 16 5 C -0.02 -0.23 6.48 -35.30 -0.23 -0.46 16 6 C 0.12 1.05 3.97 -4.97 -0.02 1.03 16 7 N -0.50 -5.53 4.84 -218.84 -1.06 -6.59 16 8 C 0.04 0.42 6.21 -2.14 -0.01 0.41 16 9 C -0.13 -1.28 7.08 -24.46 -0.17 -1.46 16 10 C -0.12 -1.30 5.86 -25.19 -0.15 -1.45 16 11 C 0.07 0.85 0.99 -132.20 -0.13 0.72 16 12 C -0.16 -1.49 5.51 -25.41 -0.14 -1.63 16 13 C 0.10 1.15 6.99 -2.99 -0.02 1.13 16 14 N -0.61 -10.10 2.94 -172.51 -0.51 -10.61 16 15 C 0.14 2.74 5.88 -4.04 -0.02 2.71 16 16 C -0.02 -0.57 4.36 -27.88 -0.12 -0.69 16 17 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 18 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 20 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 21 Si 0.88 21.78 27.47 -169.99 -4.67 17.12 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 25 C 0.54 9.32 6.97 -11.12 -0.08 9.25 16 26 O -0.52 -11.22 17.42 5.55 0.10 -11.13 16 27 O 0.10 1.08 11.20 17.16 0.19 1.27 16 28 N -0.36 -4.33 12.06 33.42 0.40 -3.93 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.12 0.88 5.05 -51.93 -0.26 0.61 16 36 H 0.07 0.44 6.80 -51.93 -0.35 0.08 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.45 7.62 -51.93 -0.40 0.05 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.65 7.81 -51.93 -0.41 0.24 16 42 H 0.08 1.11 7.79 -51.93 -0.40 0.70 16 43 H 0.09 0.79 7.83 -51.93 -0.41 0.38 16 44 H 0.10 0.61 4.85 -51.93 -0.25 0.36 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.07 0.62 6.76 -51.93 -0.35 0.27 16 47 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.08 1.67 7.93 -51.93 -0.41 1.26 16 49 H 0.02 0.52 7.20 -51.93 -0.37 0.14 16 50 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 51 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -35.04 403.12 -9.26 -44.30 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -8.25 Total: -2.03 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -2.32 Total: -7.62 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.39 Total: -47.98 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.29 Total: -9.85 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.04 -9.26 -44.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272570872.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.373 kcal (2) G-P(sol) polarization free energy of solvation -35.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds