Wall clock time and date at job start Wed Apr 1 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50693 * 109.47340 * 2 1 4 4 C 1.41382 * 126.80144 * 125.25855 * 3 2 1 5 5 C 1.35449 * 103.98637 * 180.16923 * 4 3 2 6 6 C 1.50702 * 126.77958 * 179.90634 * 5 4 3 7 7 N 1.46908 * 109.46990 * 89.70631 * 6 5 4 8 8 C 1.48070 * 110.99735 * 69.57930 * 7 6 5 9 9 C 1.54975 * 104.82219 * 146.02010 * 8 7 6 10 10 C 1.55321 * 101.73722 * 323.34188 * 9 8 7 11 11 C 1.46651 * 110.99749 * 190.00116 * 7 6 5 12 12 C 1.53879 * 110.90459 * 357.85820 * 11 7 6 13 13 C 1.54647 * 101.59579 * 96.52206 * 12 11 7 14 14 N 1.46841 * 105.55930 * 24.56149 * 13 12 11 15 15 C 1.46497 * 124.36375 * 163.35339 * 14 13 12 16 16 C 1.53001 * 109.47547 * 270.19760 * 15 14 13 17 17 C 1.50696 * 109.47518 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99780 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00325 * 180.02562 * 17 16 15 20 20 N 1.31505 * 120.00222 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 119.99568 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47453 * 90.00156 * 21 19 17 23 23 H 1.48502 * 109.46986 * 210.00042 * 21 19 17 24 24 H 1.48501 * 109.47432 * 330.00014 * 21 19 17 25 25 C 1.34658 * 111.27145 * 343.50803 * 14 13 12 26 26 O 1.21283 * 125.07959 * 180.71764 * 25 14 13 27 27 O 1.34046 * 106.44699 * 359.64360 * 5 4 3 28 28 N 1.20919 * 111.56501 * 0.24251 * 27 5 4 29 29 H 1.09004 * 109.47525 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47315 * 299.99477 * 1 2 3 31 31 H 1.09004 * 109.47308 * 59.99890 * 1 2 3 32 32 H 1.09009 * 109.46960 * 240.00162 * 2 1 3 33 33 H 1.08995 * 109.47438 * 120.00952 * 2 1 3 34 34 H 1.08001 * 128.00562 * 0.07297 * 4 3 2 35 35 H 1.09003 * 109.47007 * 329.71137 * 6 5 4 36 36 H 1.08996 * 109.47668 * 209.70463 * 6 5 4 37 37 H 1.09003 * 110.37082 * 264.85965 * 8 7 6 38 38 H 1.09003 * 110.36816 * 27.18218 * 8 7 6 39 39 H 1.08999 * 110.97348 * 81.45103 * 9 8 7 40 40 H 1.08997 * 110.97700 * 205.19478 * 9 8 7 41 41 H 1.08997 * 110.74683 * 276.70634 * 10 9 8 42 42 H 1.09002 * 110.74491 * 153.36071 * 10 9 8 43 43 H 1.08997 * 111.00186 * 214.60210 * 12 11 7 44 44 H 1.09000 * 111.00150 * 338.40543 * 12 11 7 45 45 H 1.08994 * 110.23729 * 143.77703 * 13 12 11 46 46 H 1.08992 * 110.24044 * 265.76686 * 13 12 11 47 47 H 1.09001 * 109.47486 * 30.19584 * 15 14 13 48 48 H 1.09000 * 109.47596 * 150.19665 * 15 14 13 49 49 H 1.08995 * 109.46864 * 300.00052 * 16 15 14 50 50 H 1.09000 * 109.46750 * 59.99387 * 16 15 14 51 51 H 0.96998 * 120.00560 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9308 2.0014 0.9244 5 6 3.0582 3.2806 0.4978 6 6 3.9037 4.3602 1.1227 7 7 5.2481 4.3334 0.5309 8 6 5.2164 4.7861 -0.8785 9 6 6.5619 5.5262 -1.0875 10 6 6.7553 6.2243 0.2865 11 6 6.1660 5.2043 1.2722 12 6 5.4335 5.9270 2.4164 13 6 5.7611 5.0140 3.6208 14 7 7.0087 4.3258 3.2656 15 6 7.8744 3.6359 4.2250 16 6 8.9082 4.6189 4.7781 17 6 9.7992 3.9090 5.7645 18 1 9.6435 2.8615 5.9762 19 6 10.8126 4.5970 6.3976 20 7 11.5898 3.9776 7.2588 21 14 11.0815 6.4090 6.0319 22 1 10.2749 7.2286 6.9714 23 1 12.5200 6.7390 6.1966 24 1 10.6635 6.6999 4.6369 25 6 7.2560 4.4136 1.9449 26 8 8.2116 3.9242 1.3807 27 8 2.2882 3.3952 -0.5935 28 7 1.7282 2.3555 -0.8535 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8898 34 1 3.4045 1.5336 1.7748 35 1 3.9761 4.1889 2.1968 36 1 3.4456 5.3322 0.9398 37 1 5.1456 3.9306 -1.5503 38 1 4.3802 5.4664 -1.0398 39 1 7.3691 4.8204 -1.2835 40 1 6.4835 6.2590 -1.8905 41 1 6.2014 7.1623 0.3243 42 1 7.8132 6.3908 0.4895 43 1 5.8348 6.9294 2.5654 44 1 4.3597 5.9618 2.2324 45 1 5.9006 5.6128 4.5208 46 1 4.9632 4.2869 3.7707 47 1 7.2704 3.2450 5.0439 48 1 8.3863 2.8129 3.7262 49 1 9.5122 5.0097 3.9593 50 1 8.3964 5.4419 5.2769 51 1 12.3030 4.4615 7.7039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272570872.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:22 Heat of formation + Delta-G solvation = 21.362369 kcal Electronic energy + Delta-G solvation = -31570.244209 eV Core-core repulsion = 27472.323771 eV Total energy + Delta-G solvation = -4097.920438 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.88849 -42.35720 -39.21390 -37.44397 -36.42499 -35.52467 -34.81670 -33.70719 -32.37130 -31.59098 -31.12053 -28.91419 -27.47851 -26.69242 -25.28812 -24.60075 -23.97187 -23.24586 -22.39068 -21.66858 -20.44685 -19.90258 -19.07150 -18.66553 -18.33624 -17.78762 -17.36641 -16.55067 -16.50259 -16.17359 -15.86933 -15.77492 -15.32774 -15.06141 -14.89206 -14.85005 -14.72465 -14.52323 -14.36377 -14.04858 -13.90009 -13.60353 -13.53717 -13.43358 -13.11359 -12.91626 -12.85264 -12.49959 -12.42727 -12.38340 -12.22176 -12.00530 -11.95841 -11.91656 -11.86938 -11.74932 -11.68311 -11.50617 -10.93581 -10.84840 -10.79609 -10.40915 -9.57360 -9.39989 -8.33203 -6.38218 0.44768 1.25955 1.30338 1.35319 1.46451 1.57982 2.07739 2.14557 2.32622 2.98574 3.01711 3.24736 3.25412 3.28617 3.48751 3.69156 3.81424 3.93819 4.00220 4.16511 4.19475 4.23792 4.24791 4.27965 4.30254 4.40868 4.44774 4.49110 4.54688 4.63117 4.68278 4.73851 4.78422 4.81105 4.82985 4.89831 4.96354 4.97539 5.02969 5.08376 5.10883 5.12029 5.15078 5.25905 5.31380 5.31916 5.50802 5.70942 5.75524 5.89538 6.20734 6.32319 6.68397 7.24946 7.29206 7.31452 8.83141 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.002634 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.906745 B =10626.219972 C =11729.230274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.011 3.989 4 C -0.221 4.221 5 C -0.021 4.021 6 C 0.124 3.876 7 N -0.523 5.523 8 C 0.049 3.951 9 C -0.125 4.125 10 C -0.119 4.119 11 C 0.081 3.919 12 C -0.151 4.151 13 C 0.090 3.910 14 N -0.618 5.618 15 C 0.149 3.851 16 C -0.013 4.013 17 C -0.533 4.533 18 H 0.038 0.962 19 C 0.008 3.992 20 N -0.946 5.946 21 Si 0.950 3.050 22 H -0.254 1.254 23 H -0.284 1.284 24 H -0.261 1.261 25 C 0.521 3.479 26 O -0.579 6.579 27 O 0.090 5.910 28 N -0.390 5.390 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.181 0.819 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.141 0.859 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.045 0.955 49 H -0.002 1.002 50 H 0.031 0.969 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.238 4.789 -14.918 30.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.243 4.243 5 C -0.085 4.085 6 C -0.003 4.003 7 N -0.249 5.249 8 C -0.078 4.078 9 C -0.163 4.163 10 C -0.158 4.158 11 C -0.013 4.013 12 C -0.188 4.188 13 C -0.031 4.031 14 N -0.350 5.350 15 C 0.027 3.973 16 C -0.051 4.051 17 C -0.571 4.571 18 H 0.056 0.944 19 C -0.189 4.189 20 N -0.586 5.586 21 Si 0.774 3.226 22 H -0.178 1.178 23 H -0.210 1.210 24 H -0.185 1.185 25 C 0.308 3.692 26 O -0.458 6.458 27 O 0.026 5.974 28 N -0.096 5.096 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.199 0.801 35 H 0.147 0.853 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.074 0.926 43 H 0.125 0.875 44 H 0.159 0.841 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.109 0.891 48 H 0.063 0.937 49 H 0.016 0.984 50 H 0.050 0.950 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.190 4.039 -16.075 30.994 hybrid contribution 1.436 0.418 0.837 1.714 sum -24.754 4.457 -15.238 29.408 Atomic orbital electron populations 1.21688 0.93508 1.03098 1.01735 1.20100 0.97021 0.86958 1.04588 1.24047 0.98475 0.99107 0.93142 1.22704 1.03096 0.93869 1.04628 1.24558 0.96365 0.98143 0.89432 1.21199 0.85323 0.94569 0.99255 1.62998 1.07267 1.51698 1.02979 1.23171 0.98112 0.98816 0.87702 1.22718 0.96710 0.99425 0.97489 1.22693 1.01401 0.98067 0.93617 1.21711 0.92476 0.91642 0.95423 1.23482 1.04312 0.99676 0.91369 1.22496 0.85060 0.95944 0.99630 1.48639 1.24573 1.54220 1.07583 1.21124 0.91437 0.94026 0.90709 1.19729 0.94503 0.96214 0.94650 1.21286 1.14986 0.97330 1.23530 0.94368 1.25954 0.95094 1.03618 0.94262 1.70044 1.20307 1.38957 1.29297 0.85659 0.77713 0.79590 0.79667 1.17788 1.20999 1.18544 1.21164 0.86071 0.79400 0.82588 1.90641 1.34437 1.50744 1.69935 1.84762 1.45412 1.29455 1.37814 1.73775 1.18645 0.93953 1.23252 0.90025 0.92649 0.93498 0.89842 0.87950 0.80136 0.85328 0.88080 0.91537 0.89892 0.93309 0.87752 0.86419 0.92593 0.87472 0.84141 0.88920 0.88736 0.89146 0.93653 0.98409 0.95045 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.88 71.98 0.71 -1.09 16 2 C -0.05 -0.70 6.53 29.84 0.19 -0.50 16 3 C 0.01 0.21 6.59 43.58 0.29 0.50 16 4 C -0.22 -4.04 11.05 22.40 0.25 -3.80 16 5 C -0.02 -0.36 6.48 25.04 0.16 -0.20 16 6 C 0.12 1.57 3.97 85.56 0.34 1.91 16 7 N -0.52 -10.25 4.84 -846.29 -4.10 -14.35 16 8 C 0.05 0.84 6.21 86.75 0.54 1.38 16 9 C -0.13 -2.38 7.08 32.07 0.23 -2.15 16 10 C -0.12 -2.32 5.86 31.59 0.18 -2.13 16 11 C 0.08 1.73 0.99 3.27 0.00 1.74 16 12 C -0.15 -1.96 5.51 31.45 0.17 -1.79 16 13 C 0.09 1.69 6.99 86.88 0.61 2.29 16 14 N -0.62 -19.70 2.94 -818.14 -2.41 -22.11 16 15 C 0.15 5.99 5.88 86.38 0.51 6.50 16 16 C -0.01 -0.60 4.36 29.85 0.13 -0.47 16 17 C -0.53 -31.03 9.66 25.60 0.25 -30.78 16 18 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16 19 C 0.01 0.49 5.47 84.66 0.46 0.95 16 20 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 21 Si 0.95 44.83 27.47 68.60 1.88 46.72 16 22 H -0.25 -10.97 7.11 99.48 0.71 -10.27 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 24 H -0.26 -12.02 6.54 99.48 0.65 -11.37 16 25 C 0.52 18.00 6.97 87.62 0.61 18.61 16 26 O -0.58 -26.53 17.42 -3.04 -0.05 -26.59 16 27 O 0.09 1.85 11.20 71.58 0.80 2.65 16 28 N -0.39 -8.89 12.06 -49.55 -0.60 -9.48 16 29 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.13 1.30 5.05 -2.39 -0.01 1.29 16 36 H 0.10 0.66 6.80 -2.39 -0.02 0.64 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 0.99 7.62 -2.39 -0.02 0.97 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.12 1.37 7.81 -2.39 -0.02 1.35 16 42 H 0.06 1.43 7.79 -2.39 -0.02 1.41 16 43 H 0.11 1.19 7.83 -2.39 -0.02 1.17 16 44 H 0.14 0.73 4.85 -2.39 -0.01 0.72 16 45 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.09 1.28 6.76 -2.39 -0.02 1.27 16 47 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 48 H 0.04 2.08 7.93 -2.39 -0.02 2.06 16 49 H 0.00 -0.13 7.20 -2.39 -0.02 -0.15 16 50 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 51 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -82.61 403.12 2.34 -80.27 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.87 Total: 11.12 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 5.64 Total: -9.03 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -6.80 Total: -105.14 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: 0.75 Total: -23.94 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.72 kcal Total: -82.61 2.34 -80.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272570872.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.635 kcal (2) G-P(sol) polarization free energy of solvation -82.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds