Wall clock time and date at job start Wed Apr 1 2020 05:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47168 * 2 1 4 4 C 1.41380 * 126.80383 * 125.28762 * 3 2 1 5 5 C 1.35451 * 103.98918 * 180.09172 * 4 3 2 6 6 C 1.50697 * 126.77674 * 179.90578 * 5 4 3 7 7 N 1.46899 * 109.46995 * 89.72138 * 6 5 4 8 8 C 1.48652 * 110.99465 * 290.12242 * 7 6 5 9 9 C 1.54642 * 104.63666 * 201.49507 * 8 7 6 10 10 C 1.53252 * 104.67439 * 23.67426 * 9 8 7 11 11 C 1.53616 * 111.05410 * 239.03745 * 10 9 8 12 12 C 1.54875 * 101.43790 * 214.76381 * 11 10 9 13 13 N 1.46881 * 105.43287 * 24.84751 * 12 11 10 14 14 C 1.46500 * 124.37129 * 163.08204 * 13 12 11 15 15 C 1.52997 * 109.47473 * 269.72510 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 C 1.34759 * 111.26146 * 342.81651 * 13 12 11 25 25 O 1.21283 * 125.14097 * 181.26138 * 24 13 12 26 26 C 1.48805 * 111.00222 * 174.51046 * 7 6 5 27 27 O 1.34040 * 106.44255 * 359.64884 * 5 4 3 28 28 N 1.20920 * 111.57107 * 0.24142 * 27 5 4 29 29 H 1.09007 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47828 * 299.99896 * 1 2 3 31 31 H 1.08997 * 109.46950 * 60.00541 * 1 2 3 32 32 H 1.08997 * 109.47744 * 239.99625 * 2 1 3 33 33 H 1.09001 * 109.46871 * 119.99946 * 2 1 3 34 34 H 1.08003 * 128.00721 * 0.02562 * 4 3 2 35 35 H 1.08994 * 109.47800 * 329.71388 * 6 5 4 36 36 H 1.09006 * 109.46881 * 209.71385 * 6 5 4 37 37 H 1.09002 * 110.40685 * 82.70503 * 8 7 6 38 38 H 1.09006 * 110.50397 * 320.33199 * 8 7 6 39 39 H 1.08997 * 110.39720 * 264.87454 * 9 8 7 40 40 H 1.09006 * 110.39626 * 142.46897 * 9 8 7 41 41 H 1.09002 * 111.01881 * 333.01796 * 11 10 9 42 42 H 1.09006 * 111.02055 * 96.87302 * 11 10 9 43 43 H 1.08996 * 110.38083 * 265.81348 * 12 11 10 44 44 H 1.09001 * 110.17765 * 143.77528 * 12 11 10 45 45 H 1.09002 * 109.47129 * 149.72253 * 14 13 12 46 46 H 1.08998 * 109.46845 * 29.73059 * 14 13 12 47 47 H 1.09002 * 109.47153 * 59.99757 * 15 14 13 48 48 H 1.09001 * 109.46832 * 299.99948 * 15 14 13 49 49 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 50 50 H 1.09003 * 110.45885 * 39.47448 * 26 7 6 51 51 H 1.08993 * 110.45397 * 276.91321 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9312 2.0013 0.9240 5 6 3.0597 3.2801 0.4965 6 6 3.9061 4.3594 1.1208 7 7 5.2503 4.3312 0.5290 8 6 5.9955 3.1184 0.9572 9 6 7.4843 3.4803 0.7479 10 6 7.5225 5.0115 0.7985 11 6 8.0837 5.5930 -0.5078 12 6 8.8535 6.8318 0.0132 13 7 9.1882 6.5250 1.4100 14 6 10.2037 7.2344 2.1922 15 6 11.5556 6.5379 2.0241 16 6 12.6003 7.2680 2.8281 17 1 12.3273 8.1412 3.4021 18 6 13.9045 6.8206 2.8319 19 7 14.2368 5.7570 2.1335 20 14 15.1993 7.7252 3.8292 21 1 14.5734 8.8805 4.5211 22 1 15.7824 6.8024 4.8361 23 1 16.2712 8.2112 2.9237 24 6 8.4366 5.5105 1.8812 25 8 8.4898 5.0675 3.0089 26 6 6.0752 5.4661 1.0248 27 8 2.2898 3.3946 -0.5947 28 7 1.7289 2.3552 -0.8541 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.4048 1.5337 1.7746 35 1 3.9783 4.1889 2.1949 36 1 3.4486 5.3316 0.9373 37 1 5.7210 2.2650 0.3371 38 1 5.8011 2.9019 2.0078 39 1 7.8291 3.1236 -0.2226 40 1 8.0938 3.0585 1.5472 41 1 8.7564 4.8860 -0.9933 42 1 7.2794 5.8897 -1.1811 43 1 8.2228 7.7194 -0.0371 44 1 9.7632 6.9812 -0.5684 45 1 9.9208 7.2292 3.2448 46 1 10.2791 8.2636 1.8413 47 1 11.8385 6.5430 0.9714 48 1 11.4801 5.5086 2.3750 49 1 15.1544 5.4424 2.1359 50 1 5.8908 5.6363 2.0856 51 1 5.8653 6.3687 0.4511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272571920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:51 Heat of formation + Delta-G solvation = 26.211488 kcal Electronic energy + Delta-G solvation = -30447.152697 eV Core-core repulsion = 26349.442533 eV Total energy + Delta-G solvation = -4097.710165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.15464 -40.98450 -38.25943 -36.04551 -35.79814 -34.56706 -33.26382 -32.03243 -31.45336 -30.43299 -29.05661 -28.05737 -26.54541 -25.01222 -24.76825 -23.49858 -23.07993 -21.93180 -21.60470 -20.30428 -19.90973 -18.62265 -17.84269 -17.45143 -16.72300 -16.35843 -16.10399 -15.50255 -15.23368 -15.14676 -14.73631 -14.55816 -14.45965 -14.38839 -14.14180 -13.91817 -13.40809 -13.29181 -12.98425 -12.76898 -12.69971 -12.56359 -12.35182 -12.11834 -12.04826 -11.93211 -11.82681 -11.60149 -11.43882 -11.29435 -11.13053 -10.98259 -10.89552 -10.70611 -10.67705 -10.27779 -10.02677 -9.89801 -9.74871 -9.37884 -9.13472 -8.87481 -8.40225 -8.05251 -6.05002 -4.08565 1.16872 1.94450 2.76974 2.91620 3.28852 3.35802 3.39263 3.45407 3.73906 3.86252 4.08229 4.31595 4.38249 4.42809 4.43547 4.64565 4.71143 4.77838 4.82028 4.89528 4.96786 5.02082 5.04689 5.08289 5.24071 5.30664 5.31366 5.34795 5.38870 5.41890 5.43049 5.57779 5.60380 5.67890 5.70059 5.79948 5.83188 5.84334 5.90860 5.98802 6.03912 6.10063 6.41955 6.43464 6.53073 6.77766 6.96445 7.46762 7.64023 7.81552 7.94589 8.03275 8.30576 8.61599 8.98348 9.55773 11.06399 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030265 B = 0.001804 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.946556 B =15514.061592 C =15818.900570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C 0.018 3.982 4 C -0.228 4.228 5 C -0.010 4.010 6 C 0.119 3.881 7 N -0.503 5.503 8 C 0.033 3.967 9 C -0.103 4.103 10 C -0.099 4.099 11 C -0.116 4.116 12 C 0.098 3.902 13 N -0.609 5.609 14 C 0.127 3.873 15 C 0.012 3.988 16 C -0.523 4.523 17 H 0.058 0.942 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.524 3.476 25 O -0.530 6.530 26 C 0.060 3.940 27 O 0.107 5.893 28 N -0.364 5.364 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.169 0.831 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.261 0.739 50 H 0.056 0.944 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.579 -6.754 -6.510 27.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.250 4.250 5 C -0.075 4.075 6 C -0.010 4.010 7 N -0.228 5.228 8 C -0.095 4.095 9 C -0.141 4.141 10 C -0.103 4.103 11 C -0.154 4.154 12 C -0.025 4.025 13 N -0.341 5.341 14 C 0.007 3.993 15 C -0.026 4.026 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.310 3.690 25 O -0.407 6.407 26 C -0.068 4.068 27 O 0.040 5.960 28 N -0.067 5.067 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.186 0.814 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.036 0.964 48 H 0.039 0.961 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -26.207 -6.951 -7.574 28.151 hybrid contribution 1.486 0.150 2.029 2.520 sum -24.721 -6.801 -5.545 26.232 Atomic orbital electron populations 1.21726 0.94108 1.02177 1.02563 1.19948 0.96554 0.88145 1.03674 1.23557 0.98744 0.98309 0.93489 1.22444 1.04248 0.93838 1.04461 1.24189 0.96497 0.97152 0.89629 1.20657 0.88425 0.95987 0.95908 1.65502 1.00292 1.03150 1.53832 1.23265 0.93390 0.93498 0.99308 1.22203 0.95975 0.92408 1.03549 1.21373 0.95113 0.97484 0.96376 1.22691 1.00118 0.97096 0.95467 1.22171 1.00146 0.97371 0.82839 1.48649 1.37719 1.34638 1.13144 1.21813 0.88281 0.94860 0.94337 1.19407 0.89306 0.96478 0.97418 1.21126 0.93265 1.12678 1.29069 0.92414 1.25003 0.98677 0.95024 0.95570 1.69982 1.18555 1.23592 1.40978 0.86495 0.81506 0.79768 0.79980 1.19653 1.20957 1.20974 1.20185 0.80949 0.80006 0.87884 1.90693 1.69260 1.60375 1.20370 1.22876 0.89786 0.94488 0.99614 1.84833 1.44703 1.29370 1.37060 1.73820 1.17354 0.93357 1.22218 0.91789 0.92541 0.92097 0.89921 0.89614 0.81380 0.90648 0.87995 0.89863 0.93050 0.90006 0.89845 0.89717 0.88879 0.91486 0.90036 0.91175 0.91556 0.96420 0.96143 0.92975 0.92567 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.88 37.16 0.37 -0.55 16 2 C -0.05 -0.30 6.53 -27.89 -0.18 -0.48 16 3 C 0.02 0.17 6.59 -82.10 -0.54 -0.38 16 4 C -0.23 -1.93 10.57 -39.38 -0.42 -2.35 16 5 C -0.01 -0.09 6.60 -35.30 -0.23 -0.33 16 6 C 0.12 0.93 5.38 -4.98 -0.03 0.90 16 7 N -0.50 -4.75 5.36 -231.59 -1.24 -5.99 16 8 C 0.03 0.33 5.73 -1.99 -0.01 0.32 16 9 C -0.10 -1.22 6.27 -25.74 -0.16 -1.39 16 10 C -0.10 -1.25 0.83 -155.25 -0.13 -1.38 16 11 C -0.12 -1.25 6.09 -25.42 -0.15 -1.41 16 12 C 0.10 1.25 7.37 -2.85 -0.02 1.23 16 13 N -0.61 -10.64 2.94 -172.42 -0.51 -11.15 16 14 C 0.13 2.63 5.89 -4.04 -0.02 2.61 16 15 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 16 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.52 9.25 6.65 -11.22 -0.07 9.17 16 25 O -0.53 -11.51 17.16 5.55 0.10 -11.41 16 26 C 0.06 0.62 5.55 -2.57 -0.01 0.60 16 27 O 0.11 1.18 11.20 17.18 0.19 1.37 16 28 N -0.36 -4.16 12.06 33.42 0.40 -3.76 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.08 0.53 7.88 -51.93 -0.41 0.12 16 36 H 0.10 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.08 0.78 8.00 -51.93 -0.42 0.37 16 38 H 0.05 0.51 7.82 -51.93 -0.41 0.10 16 39 H 0.08 0.88 7.44 -51.93 -0.39 0.49 16 40 H 0.08 1.17 7.47 -51.93 -0.39 0.79 16 41 H 0.08 0.93 7.61 -51.93 -0.40 0.53 16 42 H 0.09 0.80 7.70 -51.93 -0.40 0.40 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.07 1.53 7.93 -51.93 -0.41 1.12 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.06 0.62 7.77 -51.93 -0.40 0.22 16 51 H 0.09 0.82 7.68 -51.93 -0.40 0.42 16 LS Contribution 413.61 15.07 6.23 6.23 Total: -1.00 -34.17 413.61 -9.92 -44.09 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -8.63 Total: -3.16 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.18 Total: -6.67 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.61 Total: -46.98 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.29 Total: -10.04 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.17 -9.92 -44.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272571920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.298 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds