Wall clock time and date at job start Wed Apr 1 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47168 * 2 1 4 4 C 1.41380 * 126.80383 * 125.28762 * 3 2 1 5 5 C 1.35451 * 103.98918 * 180.09172 * 4 3 2 6 6 C 1.50697 * 126.77674 * 179.90578 * 5 4 3 7 7 N 1.46899 * 109.46995 * 89.72138 * 6 5 4 8 8 C 1.48652 * 110.99465 * 290.12242 * 7 6 5 9 9 C 1.54642 * 104.63666 * 201.49507 * 8 7 6 10 10 C 1.53252 * 104.67439 * 23.67426 * 9 8 7 11 11 C 1.53616 * 111.05410 * 239.03745 * 10 9 8 12 12 C 1.54875 * 101.43790 * 214.76381 * 11 10 9 13 13 N 1.46881 * 105.43287 * 24.84751 * 12 11 10 14 14 C 1.46500 * 124.37129 * 163.08204 * 13 12 11 15 15 C 1.52997 * 109.47473 * 269.72510 * 14 13 12 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 C 1.34759 * 111.26146 * 342.81651 * 13 12 11 25 25 O 1.21283 * 125.14097 * 181.26138 * 24 13 12 26 26 C 1.48805 * 111.00222 * 174.51046 * 7 6 5 27 27 O 1.34040 * 106.44255 * 359.64884 * 5 4 3 28 28 N 1.20920 * 111.57107 * 0.24142 * 27 5 4 29 29 H 1.09007 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47828 * 299.99896 * 1 2 3 31 31 H 1.08997 * 109.46950 * 60.00541 * 1 2 3 32 32 H 1.08997 * 109.47744 * 239.99625 * 2 1 3 33 33 H 1.09001 * 109.46871 * 119.99946 * 2 1 3 34 34 H 1.08003 * 128.00721 * 0.02562 * 4 3 2 35 35 H 1.08994 * 109.47800 * 329.71388 * 6 5 4 36 36 H 1.09006 * 109.46881 * 209.71385 * 6 5 4 37 37 H 1.09002 * 110.40685 * 82.70503 * 8 7 6 38 38 H 1.09006 * 110.50397 * 320.33199 * 8 7 6 39 39 H 1.08997 * 110.39720 * 264.87454 * 9 8 7 40 40 H 1.09006 * 110.39626 * 142.46897 * 9 8 7 41 41 H 1.09002 * 111.01881 * 333.01796 * 11 10 9 42 42 H 1.09006 * 111.02055 * 96.87302 * 11 10 9 43 43 H 1.08996 * 110.38083 * 265.81348 * 12 11 10 44 44 H 1.09001 * 110.17765 * 143.77528 * 12 11 10 45 45 H 1.09002 * 109.47129 * 149.72253 * 14 13 12 46 46 H 1.08998 * 109.46845 * 29.73059 * 14 13 12 47 47 H 1.09002 * 109.47153 * 59.99757 * 15 14 13 48 48 H 1.09001 * 109.46832 * 299.99948 * 15 14 13 49 49 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 50 50 H 1.09003 * 110.45885 * 39.47448 * 26 7 6 51 51 H 1.08993 * 110.45397 * 276.91321 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9312 2.0013 0.9240 5 6 3.0597 3.2801 0.4965 6 6 3.9061 4.3594 1.1208 7 7 5.2503 4.3312 0.5290 8 6 5.9955 3.1184 0.9572 9 6 7.4843 3.4803 0.7479 10 6 7.5225 5.0115 0.7985 11 6 8.0837 5.5930 -0.5078 12 6 8.8535 6.8318 0.0132 13 7 9.1882 6.5250 1.4100 14 6 10.2037 7.2344 2.1922 15 6 11.5556 6.5379 2.0241 16 6 12.6003 7.2680 2.8281 17 1 12.3273 8.1412 3.4021 18 6 13.9045 6.8206 2.8319 19 7 14.2368 5.7570 2.1335 20 14 15.1993 7.7252 3.8292 21 1 14.5734 8.8805 4.5211 22 1 15.7824 6.8024 4.8361 23 1 16.2712 8.2112 2.9237 24 6 8.4366 5.5105 1.8812 25 8 8.4898 5.0675 3.0089 26 6 6.0752 5.4661 1.0248 27 8 2.2898 3.3946 -0.5947 28 7 1.7289 2.3552 -0.8541 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.4048 1.5337 1.7746 35 1 3.9783 4.1889 2.1949 36 1 3.4486 5.3316 0.9373 37 1 5.7210 2.2650 0.3371 38 1 5.8011 2.9019 2.0078 39 1 7.8291 3.1236 -0.2226 40 1 8.0938 3.0585 1.5472 41 1 8.7564 4.8860 -0.9933 42 1 7.2794 5.8897 -1.1811 43 1 8.2228 7.7194 -0.0371 44 1 9.7632 6.9812 -0.5684 45 1 9.9208 7.2292 3.2448 46 1 10.2791 8.2636 1.8413 47 1 11.8385 6.5430 0.9714 48 1 11.4801 5.5086 2.3750 49 1 15.1544 5.4424 2.1359 50 1 5.8908 5.6363 2.0856 51 1 5.8653 6.3687 0.4511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272571920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:50 Heat of formation + Delta-G solvation = 4.225926 kcal Electronic energy + Delta-G solvation = -30448.106063 eV Core-core repulsion = 26349.442533 eV Total energy + Delta-G solvation = -4098.663530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.86740 -42.12499 -39.28877 -37.47393 -36.41235 -35.95177 -34.82458 -33.22989 -32.22905 -31.48698 -30.44048 -29.10151 -27.43607 -26.79714 -25.34127 -24.49355 -23.81530 -23.54858 -22.52509 -21.59569 -20.62875 -19.83503 -18.69851 -18.58930 -18.21539 -17.34422 -17.31576 -16.77706 -16.58026 -16.05762 -15.91951 -15.74540 -15.33077 -15.26305 -14.96015 -14.72542 -14.60009 -14.49672 -14.27882 -14.16770 -13.79975 -13.61798 -13.44719 -13.33868 -13.04853 -12.88777 -12.71037 -12.59365 -12.54511 -12.44843 -12.42284 -12.23123 -12.00473 -11.95809 -11.74972 -11.73066 -11.63225 -11.39027 -10.93315 -10.70745 -10.60814 -10.41791 -9.62970 -9.55090 -8.24732 -6.37536 0.47444 1.27813 1.38728 1.40053 1.52390 1.55001 2.09153 2.17970 2.40880 2.90105 3.09052 3.26539 3.34158 3.37989 3.46310 3.55801 3.90555 4.01179 4.06562 4.14625 4.22090 4.25138 4.29270 4.31764 4.35041 4.41397 4.46880 4.47663 4.58690 4.65802 4.70562 4.73715 4.77755 4.80088 4.83807 4.88258 4.97341 4.98057 5.03836 5.09614 5.10931 5.13510 5.21349 5.32639 5.33010 5.45712 5.58915 5.61166 5.79606 5.82278 6.14426 6.30084 6.78251 7.20640 7.32627 7.33800 8.87555 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030265 B = 0.001804 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.946556 B =15514.061592 C =15818.900570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C 0.013 3.987 4 C -0.228 4.228 5 C -0.012 4.012 6 C 0.120 3.880 7 N -0.500 5.500 8 C 0.041 3.959 9 C -0.106 4.106 10 C -0.093 4.093 11 C -0.104 4.104 12 C 0.092 3.908 13 N -0.618 5.618 14 C 0.141 3.859 15 C 0.023 3.977 16 C -0.545 4.545 17 H 0.067 0.933 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.971 3.029 21 H -0.258 1.258 22 H -0.282 1.282 23 H -0.274 1.274 24 C 0.511 3.489 25 O -0.583 6.583 26 C 0.067 3.933 27 O 0.090 5.910 28 N -0.394 5.394 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.188 0.812 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.092 0.908 47 H 0.001 0.999 48 H -0.028 1.028 49 H 0.264 0.736 50 H 0.046 0.954 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.774 -5.753 -7.084 28.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.250 4.250 5 C -0.077 4.077 6 C -0.009 4.009 7 N -0.225 5.225 8 C -0.087 4.087 9 C -0.144 4.144 10 C -0.096 4.096 11 C -0.142 4.142 12 C -0.030 4.030 13 N -0.349 5.349 14 C 0.020 3.980 15 C -0.015 4.015 16 C -0.583 4.583 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.795 3.205 21 H -0.182 1.182 22 H -0.208 1.208 23 H -0.199 1.199 24 C 0.299 3.701 25 O -0.464 6.464 26 C -0.061 4.061 27 O 0.026 5.974 28 N -0.100 5.100 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.205 0.795 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.148 0.852 43 H 0.120 0.880 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.110 0.890 47 H 0.019 0.981 48 H -0.009 1.009 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -27.424 -5.920 -8.187 29.225 hybrid contribution 1.865 -0.227 2.214 2.903 sum -25.559 -6.146 -5.973 26.958 Atomic orbital electron populations 1.21698 0.93876 1.03077 1.01590 1.20107 0.96745 0.86865 1.04818 1.24068 0.98358 0.99089 0.93019 1.22741 1.03884 0.93681 1.04731 1.24436 0.96311 0.97707 0.89211 1.20760 0.87247 0.96620 0.96229 1.65518 1.00750 1.02399 1.53827 1.23189 0.91895 0.94138 0.99494 1.22210 0.97180 0.92024 1.03024 1.21356 0.95513 0.97755 0.95019 1.22746 1.00713 0.95878 0.94820 1.22520 1.00911 0.99704 0.79853 1.48763 1.36658 1.34447 1.15015 1.21361 0.86527 0.95747 0.94392 1.19218 0.92314 0.94225 0.95726 1.21590 0.94151 1.13156 1.29403 0.91469 1.26018 1.01289 0.95818 0.96656 1.70121 1.19306 1.25277 1.42533 0.85319 0.78331 0.78632 0.78268 1.18197 1.20812 1.19920 1.21142 0.81330 0.79361 0.88253 1.90647 1.70975 1.61765 1.22989 1.22878 0.87983 0.95593 0.99615 1.84793 1.45281 1.29488 1.37870 1.73819 1.18630 0.94005 1.23546 0.89951 0.92860 0.93684 0.89581 0.87605 0.79518 0.89579 0.86246 0.89012 0.93172 0.88771 0.92945 0.90028 0.85236 0.87987 0.90536 0.92884 0.88997 0.98096 1.00938 0.92718 0.93601 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.88 71.98 0.71 -0.91 16 2 C -0.05 -0.56 6.53 29.84 0.19 -0.36 16 3 C 0.01 0.23 6.59 43.58 0.29 0.52 16 4 C -0.23 -3.46 10.57 22.40 0.24 -3.23 16 5 C -0.01 -0.20 6.60 25.04 0.17 -0.04 16 6 C 0.12 1.58 5.38 85.56 0.46 2.04 16 7 N -0.50 -8.19 5.36 -886.62 -4.75 -12.94 16 8 C 0.04 0.75 5.73 86.52 0.50 1.24 16 9 C -0.11 -2.49 6.27 31.24 0.20 -2.29 16 10 C -0.09 -2.22 0.83 -52.66 -0.04 -2.26 16 11 C -0.10 -1.99 6.09 31.44 0.19 -1.80 16 12 C 0.09 2.16 7.37 86.95 0.64 2.80 16 13 N -0.62 -21.62 2.94 -817.82 -2.41 -24.03 16 14 C 0.14 5.98 5.89 86.38 0.51 6.48 16 15 C 0.02 1.26 5.30 29.85 0.16 1.41 16 16 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 17 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 18 C 0.00 0.02 5.46 84.66 0.46 0.48 16 19 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 20 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 C 0.51 18.42 6.65 87.51 0.58 19.00 16 25 O -0.58 -26.70 17.16 -3.04 -0.05 -26.75 16 26 C 0.07 1.21 5.55 86.06 0.48 1.69 16 27 O 0.09 1.89 11.20 71.64 0.80 2.69 16 28 N -0.39 -8.75 12.06 -49.56 -0.60 -9.34 16 29 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.09 0.99 7.88 -2.39 -0.02 0.98 16 36 H 0.12 1.18 8.13 -2.38 -0.02 1.17 16 37 H 0.09 1.56 8.00 -2.39 -0.02 1.54 16 38 H 0.05 0.94 7.82 -2.38 -0.02 0.92 16 39 H 0.09 1.94 7.44 -2.39 -0.02 1.92 16 40 H 0.05 1.56 7.47 -2.38 -0.02 1.54 16 41 H 0.08 1.64 7.61 -2.39 -0.02 1.62 16 42 H 0.13 1.62 7.70 -2.38 -0.02 1.60 16 43 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.05 2.40 7.93 -2.39 -0.02 2.38 16 46 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 47 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 48 H -0.03 -1.75 8.14 -2.39 -0.02 -1.77 16 49 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 50 H 0.05 0.95 7.77 -2.39 -0.02 0.93 16 51 H 0.12 1.59 7.68 -2.39 -0.02 1.57 16 Total: -1.00 -78.45 413.61 2.16 -76.29 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.91 Total: 11.12 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 5.96 Total: -6.21 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -7.48 Total: -103.54 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: 0.75 Total: -24.06 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -78.45 2.16 -76.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272571920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.516 kcal (2) G-P(sol) polarization free energy of solvation -78.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds