Wall clock time and date at job start Wed Apr 1 2020 04:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47017 * 2 1 4 4 C 1.38019 * 119.51556 * 125.25735 * 3 2 1 5 5 C 1.39927 * 119.13707 * 180.22816 * 4 3 2 6 6 C 1.48162 * 120.89191 * 179.79693 * 5 4 3 7 7 O 1.21506 * 120.00309 * 359.71869 * 6 5 4 8 8 N 1.34781 * 119.99896 * 179.71953 * 6 5 4 9 9 C 1.46495 * 120.00040 * 185.19237 * 8 6 5 10 10 C 1.53002 * 109.47277 * 298.51829 * 9 8 6 11 11 N 1.46499 * 109.47000 * 305.45326 * 10 9 8 12 12 C 1.36931 * 119.99926 * 185.19740 * 11 10 9 13 13 H 1.08004 * 120.00086 * 354.25173 * 12 11 10 14 14 C 1.38817 * 120.00298 * 174.24695 * 12 11 10 15 15 N 1.31615 * 120.00285 * 183.68165 * 14 12 11 16 16 Si 1.86803 * 119.99477 * 3.68091 * 14 12 11 17 17 H 1.48504 * 109.46849 * 92.95993 * 16 14 12 18 18 H 1.48506 * 109.46798 * 212.95414 * 16 14 12 19 19 H 1.48494 * 109.47437 * 332.95728 * 16 14 12 20 20 C 1.53006 * 109.47134 * 58.51990 * 9 8 6 21 21 C 1.52998 * 109.46888 * 59.99580 * 20 9 8 22 22 C 1.53009 * 109.47256 * 60.00457 * 21 20 9 23 23 C 1.53006 * 109.46799 * 299.99598 * 22 21 20 24 24 C 1.52998 * 109.46888 * 60.00177 * 23 22 21 25 25 C 1.39614 * 118.21281 * 359.52682 * 5 4 3 26 26 C 1.38850 * 118.94778 * 0.24690 * 25 5 4 27 27 O 1.35688 * 119.61900 * 180.02562 * 26 25 5 28 28 N 1.31881 * 119.51541 * 305.00401 * 3 2 1 29 29 H 1.08997 * 109.47407 * 60.00272 * 1 2 3 30 30 H 1.09009 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47017 * 299.99871 * 1 2 3 32 32 H 1.09000 * 109.47017 * 240.00128 * 2 1 3 33 33 H 1.09002 * 109.47290 * 120.00196 * 2 1 3 34 34 H 1.07998 * 120.43072 * 0.02744 * 4 3 2 35 35 H 0.97005 * 119.99477 * 5.19296 * 8 6 5 36 36 H 1.08994 * 109.46647 * 65.45661 * 10 9 8 37 37 H 1.09000 * 109.46775 * 185.45467 * 10 9 8 38 38 H 0.97004 * 120.00118 * 5.19840 * 11 10 9 39 39 H 0.97001 * 119.99929 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.46714 * 179.97438 * 20 9 8 41 41 H 1.08995 * 109.46773 * 299.99781 * 20 9 8 42 42 H 1.08995 * 109.47627 * 300.00085 * 21 20 9 43 43 H 1.09006 * 109.47000 * 179.97438 * 21 20 9 44 44 H 1.08999 * 109.47078 * 179.97438 * 22 21 20 45 45 H 1.08995 * 109.47106 * 59.99310 * 22 21 20 46 46 H 1.08998 * 109.46714 * 300.00129 * 23 22 21 47 47 H 1.08995 * 109.46773 * 179.97438 * 23 22 21 48 48 H 1.09006 * 109.47000 * 180.02562 * 24 23 22 49 49 H 1.08995 * 109.47627 * 59.99915 * 24 23 22 50 50 H 1.08003 * 120.52429 * 180.27722 * 25 5 4 51 51 H 0.96704 * 114.00264 * 89.99751 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9126 1.8308 0.9808 5 6 3.3702 3.1531 0.9760 6 6 4.3121 3.6358 2.0128 7 8 4.6937 2.8815 2.8856 8 7 4.7458 4.9117 1.9878 9 6 5.7629 5.3584 2.9428 10 6 5.2258 5.2083 4.3675 11 7 3.9497 5.9181 4.4856 12 6 3.3296 6.0138 5.7027 13 1 3.7318 5.4886 6.5565 14 6 2.1841 6.7858 5.8393 15 7 1.6293 6.9366 7.0233 16 14 1.4299 7.6108 4.3426 17 1 0.3884 6.7257 3.7618 18 1 0.8145 8.9007 4.7459 19 1 2.4870 7.8617 3.3304 20 6 7.0238 4.5069 2.7806 21 6 7.5608 4.6571 1.3559 22 6 7.8995 6.1254 1.0906 23 6 6.6387 6.9769 1.2527 24 6 6.1017 6.8268 2.6774 25 6 2.9198 4.0038 -0.0353 26 6 2.0377 3.5088 -0.9865 27 8 1.5917 4.3236 -1.9757 28 7 1.6281 2.2528 -0.9401 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2414 1.1409 1.7438 35 1 4.3844 5.5341 1.3374 36 1 5.0760 4.1518 4.5897 37 1 5.9426 5.6298 5.0723 38 1 3.5440 6.3202 3.7016 39 1 0.8287 7.4758 7.1186 40 1 7.7807 4.8397 3.4909 41 1 6.7825 3.4609 2.9696 42 1 6.8041 4.3247 0.6454 43 1 8.4593 4.0508 1.2405 44 1 8.2825 6.2323 0.0757 45 1 8.6563 6.4578 1.8011 46 1 5.8819 6.6444 0.5422 47 1 6.8800 8.0230 1.0641 48 1 5.2031 7.4331 2.7928 49 1 6.8584 7.1592 3.3879 50 1 3.2526 5.0304 -0.0772 51 1 2.1445 4.3180 -2.7691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276212980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:51 Heat of formation + Delta-G solvation = -39.211332 kcal Electronic energy + Delta-G solvation = -32240.632817 eV Core-core repulsion = 28140.085706 eV Total energy + Delta-G solvation = -4100.547111 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.13070 -40.21793 -37.99208 -37.36688 -34.86417 -34.31534 -33.34122 -32.41611 -31.32420 -30.81050 -29.84705 -29.38681 -25.56547 -25.33530 -24.00533 -22.92771 -22.63525 -22.13858 -20.84428 -20.37379 -19.13081 -18.97198 -17.71929 -17.39035 -16.91311 -15.92433 -15.76551 -15.53794 -15.07686 -14.92356 -14.79503 -14.42748 -14.26500 -14.17398 -13.82415 -13.77726 -13.46021 -13.27541 -12.83634 -12.60907 -12.42466 -12.31657 -12.24426 -12.18667 -12.04183 -11.82987 -11.63025 -11.55692 -11.24911 -11.16880 -11.05903 -10.89274 -10.67405 -10.30583 -10.22344 -10.14876 -10.00726 -9.84853 -9.60366 -9.43495 -9.04291 -8.79579 -8.76517 -7.14357 -5.73561 -3.07205 0.54678 0.74539 2.82277 3.10454 3.29017 3.31760 3.37967 3.44133 3.62790 4.19637 4.42325 4.59894 4.68146 4.72007 4.75313 4.77072 4.79138 4.96666 5.01476 5.10117 5.14092 5.16898 5.26481 5.40431 5.49351 5.50105 5.53738 5.57065 5.58733 5.65131 5.69260 5.72304 5.80654 5.83169 5.93098 5.98670 6.03045 6.08575 6.15351 6.17134 6.21744 6.24143 6.35707 6.43170 6.45600 6.77644 6.95619 7.19796 7.60218 7.65792 8.05593 8.29495 8.45808 9.25714 9.97858 10.18909 11.45268 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007705 B = 0.004544 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.262772 B = 6160.434280 C = 7896.784772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C 0.151 3.849 4 C -0.123 4.123 5 C -0.060 4.060 6 C 0.563 3.437 7 O -0.511 6.511 8 N -0.705 5.705 9 C 0.174 3.826 10 C 0.145 3.855 11 N -0.750 5.750 12 C -0.236 4.236 13 H 0.089 0.911 14 C 0.004 3.996 15 N -0.934 5.934 16 Si 0.882 3.118 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.280 1.280 20 C -0.128 4.128 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.164 4.164 26 C 0.311 3.689 27 O -0.478 6.478 28 N -0.488 5.488 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.153 0.847 35 H 0.394 0.606 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.358 0.642 39 H 0.258 0.742 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.142 0.858 51 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 -8.164 -20.772 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C 0.013 3.987 4 C -0.144 4.144 5 C -0.071 4.071 6 C 0.348 3.652 7 O -0.386 6.386 8 N -0.357 5.357 9 C 0.088 3.912 10 C 0.017 3.983 11 N -0.396 5.396 12 C -0.366 4.366 13 H 0.107 0.893 14 C -0.192 4.192 15 N -0.583 5.583 16 Si 0.713 3.287 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.206 1.206 20 C -0.166 4.166 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.159 4.159 25 C -0.186 4.186 26 C 0.132 3.868 27 O -0.285 6.285 28 N -0.208 5.208 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.171 0.829 35 H 0.230 0.770 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.191 0.809 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.160 0.840 51 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 8.308 -8.803 -20.136 23.494 hybrid contribution -0.129 1.459 -1.069 1.813 sum 8.179 -7.344 -21.205 23.885 Atomic orbital electron populations 1.21692 0.93847 1.01880 1.02934 1.20536 0.97295 0.89643 1.03544 1.21000 0.92513 0.95788 0.89381 1.22157 0.97145 0.95720 0.99337 1.20440 0.97282 0.94429 0.94926 1.17891 0.80565 0.82547 0.84160 1.90741 1.56826 1.55719 1.35316 1.45903 1.42282 1.10725 1.36780 1.20725 0.86960 0.93675 0.89819 1.21109 0.88262 0.97649 0.91243 1.42589 1.22258 1.66801 1.07934 1.19055 1.06264 1.23773 0.87482 0.89305 1.24641 0.98667 0.99919 0.95952 1.69700 1.22994 1.44551 1.21045 0.86597 0.79231 0.79393 0.83523 1.21333 1.21710 1.20599 1.21883 0.95996 1.01967 0.96785 1.21467 1.00318 0.96150 0.97215 1.21544 0.97610 0.95369 1.01018 1.21568 0.97429 0.99785 0.96981 1.21821 1.02412 0.94848 0.96859 1.22271 0.98433 1.01348 0.96517 1.18906 0.90948 0.86572 0.90333 1.84839 1.54877 1.61393 1.27375 1.66741 1.24197 1.03663 1.26170 0.91615 0.92124 0.92581 0.89742 0.89672 0.82936 0.77047 0.93184 0.94701 0.80948 0.93177 0.90905 0.89742 0.92423 0.92295 0.92474 0.91875 0.92519 0.91802 0.90609 0.89940 0.84017 0.74361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.77 37.16 0.36 -1.00 16 2 C -0.07 -0.66 6.33 -27.89 -0.18 -0.83 16 3 C 0.15 1.81 6.17 -82.65 -0.51 1.30 16 4 C -0.12 -1.59 9.27 -39.03 -0.36 -1.96 16 5 C -0.06 -0.83 5.91 -104.68 -0.62 -1.45 16 6 C 0.56 8.86 7.20 -12.18 -0.09 8.77 16 7 O -0.51 -9.47 12.74 5.36 0.07 -9.40 16 8 N -0.70 -10.02 3.32 -48.44 -0.16 -10.18 16 9 C 0.17 2.58 0.32 -131.81 -0.04 2.53 16 10 C 0.15 2.90 4.88 -4.04 -0.02 2.88 16 11 N -0.75 -17.92 4.92 -59.91 -0.29 -18.22 16 12 C -0.24 -6.83 10.47 -15.06 -0.16 -6.98 16 13 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 14 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 15 N -0.93 -29.94 13.97 55.49 0.78 -29.17 16 16 Si 0.88 22.54 27.85 -169.99 -4.73 17.81 16 17 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 19 H -0.28 -6.51 6.36 56.52 0.36 -6.15 16 20 C -0.13 -1.66 4.50 -26.73 -0.12 -1.78 16 21 C -0.11 -1.19 5.77 -26.73 -0.15 -1.35 16 22 C -0.12 -1.10 5.92 -26.72 -0.16 -1.26 16 23 C -0.12 -1.21 5.75 -26.73 -0.15 -1.37 16 24 C -0.12 -1.61 4.65 -26.73 -0.12 -1.73 16 25 C -0.16 -1.98 9.54 -38.84 -0.37 -2.35 16 26 C 0.31 3.84 7.74 -17.17 -0.13 3.71 16 27 O -0.48 -4.98 13.56 -18.77 -0.25 -5.23 16 28 N -0.49 -6.32 9.87 -9.60 -0.09 -6.41 16 29 H 0.06 0.68 7.94 -51.93 -0.41 0.26 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 34 H 0.15 1.88 7.62 -52.49 -0.40 1.48 16 35 H 0.39 4.83 5.53 -40.82 -0.23 4.61 16 36 H 0.05 1.12 6.28 -51.93 -0.33 0.79 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.36 8.25 4.42 -40.82 -0.18 8.07 16 39 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.26 6.24 -51.93 -0.32 0.94 16 42 H 0.06 0.62 7.60 -51.93 -0.39 0.23 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.53 6.89 -51.93 -0.36 0.18 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 1.16 7.33 -51.93 -0.38 0.78 16 49 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.14 1.41 6.54 -52.48 -0.34 1.06 16 51 H 0.40 1.94 9.06 45.56 0.41 2.35 16 LS Contribution 397.61 15.07 5.99 5.99 Total: -1.00 -35.91 397.61 -8.79 -44.71 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -7.17 Total: 12.95 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.92 Total: -2.84 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: 0.22 Total: -63.98 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.19 Total: -14.63 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.73 Total: 17.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.91 -8.79 -44.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276212980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.495 kcal (2) G-P(sol) polarization free energy of solvation -35.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds