Wall clock time and date at job start Wed Apr 1 2020 04:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47017 * 2 1 4 4 C 1.38019 * 119.51556 * 125.25735 * 3 2 1 5 5 C 1.39927 * 119.13707 * 180.22816 * 4 3 2 6 6 C 1.48162 * 120.89191 * 179.79693 * 5 4 3 7 7 O 1.21506 * 120.00309 * 359.71869 * 6 5 4 8 8 N 1.34781 * 119.99896 * 179.71953 * 6 5 4 9 9 C 1.46495 * 120.00040 * 185.19237 * 8 6 5 10 10 C 1.53002 * 109.47277 * 298.51829 * 9 8 6 11 11 N 1.46499 * 109.47000 * 305.45326 * 10 9 8 12 12 C 1.36931 * 119.99926 * 185.19740 * 11 10 9 13 13 H 1.08004 * 120.00086 * 354.25173 * 12 11 10 14 14 C 1.38817 * 120.00298 * 174.24695 * 12 11 10 15 15 N 1.31615 * 120.00285 * 183.68165 * 14 12 11 16 16 Si 1.86803 * 119.99477 * 3.68091 * 14 12 11 17 17 H 1.48504 * 109.46849 * 92.95993 * 16 14 12 18 18 H 1.48506 * 109.46798 * 212.95414 * 16 14 12 19 19 H 1.48494 * 109.47437 * 332.95728 * 16 14 12 20 20 C 1.53006 * 109.47134 * 58.51990 * 9 8 6 21 21 C 1.52998 * 109.46888 * 59.99580 * 20 9 8 22 22 C 1.53009 * 109.47256 * 60.00457 * 21 20 9 23 23 C 1.53006 * 109.46799 * 299.99598 * 22 21 20 24 24 C 1.52998 * 109.46888 * 60.00177 * 23 22 21 25 25 C 1.39614 * 118.21281 * 359.52682 * 5 4 3 26 26 C 1.38850 * 118.94778 * 0.24690 * 25 5 4 27 27 O 1.35688 * 119.61900 * 180.02562 * 26 25 5 28 28 N 1.31881 * 119.51541 * 305.00401 * 3 2 1 29 29 H 1.08997 * 109.47407 * 60.00272 * 1 2 3 30 30 H 1.09009 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47017 * 299.99871 * 1 2 3 32 32 H 1.09000 * 109.47017 * 240.00128 * 2 1 3 33 33 H 1.09002 * 109.47290 * 120.00196 * 2 1 3 34 34 H 1.07998 * 120.43072 * 0.02744 * 4 3 2 35 35 H 0.97005 * 119.99477 * 5.19296 * 8 6 5 36 36 H 1.08994 * 109.46647 * 65.45661 * 10 9 8 37 37 H 1.09000 * 109.46775 * 185.45467 * 10 9 8 38 38 H 0.97004 * 120.00118 * 5.19840 * 11 10 9 39 39 H 0.97001 * 119.99929 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.46714 * 179.97438 * 20 9 8 41 41 H 1.08995 * 109.46773 * 299.99781 * 20 9 8 42 42 H 1.08995 * 109.47627 * 300.00085 * 21 20 9 43 43 H 1.09006 * 109.47000 * 179.97438 * 21 20 9 44 44 H 1.08999 * 109.47078 * 179.97438 * 22 21 20 45 45 H 1.08995 * 109.47106 * 59.99310 * 22 21 20 46 46 H 1.08998 * 109.46714 * 300.00129 * 23 22 21 47 47 H 1.08995 * 109.46773 * 179.97438 * 23 22 21 48 48 H 1.09006 * 109.47000 * 180.02562 * 24 23 22 49 49 H 1.08995 * 109.47627 * 59.99915 * 24 23 22 50 50 H 1.08003 * 120.52429 * 180.27722 * 25 5 4 51 51 H 0.96704 * 114.00264 * 89.99751 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9126 1.8308 0.9808 5 6 3.3702 3.1531 0.9760 6 6 4.3121 3.6358 2.0128 7 8 4.6937 2.8815 2.8856 8 7 4.7458 4.9117 1.9878 9 6 5.7629 5.3584 2.9428 10 6 5.2258 5.2083 4.3675 11 7 3.9497 5.9181 4.4856 12 6 3.3296 6.0138 5.7027 13 1 3.7318 5.4886 6.5565 14 6 2.1841 6.7858 5.8393 15 7 1.6293 6.9366 7.0233 16 14 1.4299 7.6108 4.3426 17 1 0.3884 6.7257 3.7618 18 1 0.8145 8.9007 4.7459 19 1 2.4870 7.8617 3.3304 20 6 7.0238 4.5069 2.7806 21 6 7.5608 4.6571 1.3559 22 6 7.8995 6.1254 1.0906 23 6 6.6387 6.9769 1.2527 24 6 6.1017 6.8268 2.6774 25 6 2.9198 4.0038 -0.0353 26 6 2.0377 3.5088 -0.9865 27 8 1.5917 4.3236 -1.9757 28 7 1.6281 2.2528 -0.9401 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.2414 1.1409 1.7438 35 1 4.3844 5.5341 1.3374 36 1 5.0760 4.1518 4.5897 37 1 5.9426 5.6298 5.0723 38 1 3.5440 6.3202 3.7016 39 1 0.8287 7.4758 7.1186 40 1 7.7807 4.8397 3.4909 41 1 6.7825 3.4609 2.9696 42 1 6.8041 4.3247 0.6454 43 1 8.4593 4.0508 1.2405 44 1 8.2825 6.2323 0.0757 45 1 8.6563 6.4578 1.8011 46 1 5.8819 6.6444 0.5422 47 1 6.8800 8.0230 1.0641 48 1 5.2031 7.4331 2.7928 49 1 6.8584 7.1592 3.3879 50 1 3.2526 5.0304 -0.0772 51 1 2.1445 4.3180 -2.7691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276212980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:50 Heat of formation + Delta-G solvation = -66.413109 kcal Electronic energy + Delta-G solvation = -32241.812374 eV Core-core repulsion = 28140.085706 eV Total energy + Delta-G solvation = -4101.726669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.18987 -41.27099 -39.07590 -38.24496 -36.57664 -35.31224 -34.60959 -33.61241 -33.05283 -31.75674 -31.16086 -30.36812 -27.22424 -26.30862 -24.93473 -24.41825 -23.61299 -23.34211 -22.06987 -21.41308 -20.29280 -19.89951 -19.77568 -18.38458 -17.86730 -16.90433 -16.85242 -16.63572 -16.49732 -16.32005 -15.99560 -15.72267 -15.25851 -15.16804 -15.00729 -14.90563 -14.75157 -14.65009 -14.16071 -14.01654 -13.80461 -13.37205 -13.23324 -13.10679 -13.01500 -12.98511 -12.83764 -12.75860 -12.68668 -12.39202 -12.14267 -12.03657 -11.97918 -11.89122 -11.52038 -11.38728 -11.18400 -11.10329 -10.98570 -10.80575 -10.46276 -10.03737 -9.93936 -9.27369 -8.06139 -5.38377 -0.46747 -0.16068 1.26508 1.34180 1.40823 1.73490 1.96691 2.42686 2.43706 2.62788 3.23291 3.31484 3.43001 3.53028 3.78185 3.80774 3.82887 3.84140 3.92782 4.12958 4.19535 4.22478 4.35057 4.36186 4.42114 4.46763 4.56270 4.58402 4.65124 4.73689 4.76556 4.82069 4.84991 4.90301 5.02857 5.08288 5.14337 5.15854 5.18334 5.23062 5.27569 5.28830 5.34813 5.42397 5.43752 5.50015 5.61870 5.73226 6.17145 6.44879 6.54100 6.78756 7.04809 7.11970 7.79994 8.02758 9.15879 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007705 B = 0.004544 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.262772 B = 6160.434280 C = 7896.784772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C 0.150 3.850 4 C -0.136 4.136 5 C -0.075 4.075 6 C 0.560 3.440 7 O -0.548 6.548 8 N -0.697 5.697 9 C 0.182 3.818 10 C 0.143 3.857 11 N -0.745 5.745 12 C -0.231 4.231 13 H 0.048 0.952 14 C -0.062 4.062 15 N -0.984 5.984 16 Si 0.951 3.049 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.240 1.240 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.160 4.160 26 C 0.312 3.688 27 O -0.484 6.484 28 N -0.501 5.501 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.150 0.850 35 H 0.407 0.593 36 H 0.023 0.977 37 H 0.030 0.970 38 H 0.365 0.635 39 H 0.258 0.742 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.165 0.835 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.817 -7.213 -24.765 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C 0.013 3.987 4 C -0.157 4.157 5 C -0.086 4.086 6 C 0.346 3.654 7 O -0.426 6.426 8 N -0.349 5.349 9 C 0.096 3.904 10 C 0.016 3.984 11 N -0.391 5.391 12 C -0.363 4.363 13 H 0.066 0.934 14 C -0.254 4.254 15 N -0.634 5.634 16 Si 0.778 3.222 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.164 1.164 20 C -0.162 4.162 21 C -0.145 4.145 22 C -0.151 4.151 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.182 4.182 26 C 0.132 3.868 27 O -0.294 6.294 28 N -0.222 5.222 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.168 0.832 35 H 0.244 0.756 36 H 0.041 0.959 37 H 0.048 0.952 38 H 0.199 0.801 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.183 0.817 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 9.130 -7.843 -24.202 27.030 hybrid contribution -0.351 1.069 0.252 1.153 sum 8.779 -6.773 -23.950 26.392 Atomic orbital electron populations 1.21666 0.93980 1.02869 1.01521 1.20661 0.97039 0.88247 1.05059 1.21376 0.91829 0.96887 0.88621 1.22259 0.97823 0.95719 0.99853 1.20364 0.97773 0.95212 0.95276 1.18250 0.80429 0.82606 0.84074 1.90730 1.58223 1.56726 1.36926 1.45831 1.41961 1.10554 1.36561 1.20577 0.87506 0.95706 0.86589 1.21191 0.86658 0.95309 0.95253 1.42463 1.23311 1.66954 1.06335 1.18989 1.06407 1.22644 0.88225 0.93438 1.25484 0.99280 1.01200 0.99397 1.69894 1.23676 1.45959 1.23898 0.85470 0.78846 0.77730 0.80177 1.21515 1.21739 1.16434 1.21822 0.95176 1.00005 0.99167 1.21428 1.00597 0.97650 0.94800 1.21528 0.97292 0.93811 1.02431 1.21560 0.97983 1.01112 0.94505 1.21800 1.01822 0.92541 0.99506 1.22420 0.98089 1.02067 0.95612 1.19056 0.90442 0.86515 0.90752 1.84788 1.55636 1.60815 1.28168 1.66837 1.24584 1.04218 1.26523 0.92671 0.89982 0.94237 0.87950 0.88401 0.83227 0.75577 0.95932 0.95234 0.80095 0.93362 0.90408 0.92150 0.92517 0.91126 0.90290 0.91533 0.91355 0.90149 0.92394 0.89904 0.81749 0.71540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.77 71.98 0.70 -1.79 16 2 C -0.07 -1.21 6.33 29.85 0.19 -1.02 16 3 C 0.15 3.46 6.17 42.50 0.26 3.72 16 4 C -0.14 -3.49 9.27 22.63 0.21 -3.28 16 5 C -0.08 -2.02 5.91 -19.90 -0.12 -2.14 16 6 C 0.56 17.51 7.20 86.88 0.63 18.14 16 7 O -0.55 -21.06 12.74 -3.73 -0.05 -21.11 16 8 N -0.70 -18.85 3.32 -425.45 -1.41 -20.26 16 9 C 0.18 5.26 0.32 3.61 0.00 5.26 16 10 C 0.14 5.87 4.88 86.38 0.42 6.29 16 11 N -0.74 -35.87 4.92 -343.45 -1.69 -37.57 16 12 C -0.23 -13.85 10.47 84.04 0.88 -12.97 16 13 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 14 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 15 N -0.98 -64.97 13.97 21.65 0.30 -64.67 16 16 Si 0.95 46.26 27.85 68.60 1.91 48.18 16 17 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 18 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 19 H -0.24 -10.02 6.36 99.48 0.63 -9.39 16 20 C -0.12 -3.10 4.50 30.60 0.14 -2.96 16 21 C -0.11 -1.96 5.77 30.60 0.18 -1.78 16 22 C -0.11 -1.66 5.92 30.60 0.18 -1.48 16 23 C -0.11 -1.85 5.75 30.60 0.18 -1.68 16 24 C -0.12 -2.88 4.65 30.60 0.14 -2.73 16 25 C -0.16 -3.52 9.54 22.75 0.22 -3.31 16 26 C 0.31 6.98 7.74 84.78 0.66 7.64 16 27 O -0.48 -8.64 13.56 -90.07 -1.22 -9.86 16 28 N -0.50 -12.19 9.87 -297.17 -2.93 -15.12 16 29 H 0.05 1.07 7.94 -2.39 -0.02 1.05 16 30 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.38 7.86 -2.39 -0.02 1.36 16 34 H 0.15 3.82 7.62 -2.91 -0.02 3.79 16 35 H 0.41 8.83 5.53 -92.70 -0.51 8.32 16 36 H 0.02 1.07 6.28 -2.39 -0.02 1.05 16 37 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.37 16.36 4.42 -92.71 -0.41 15.95 16 39 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 1.84 6.24 -2.39 -0.01 1.82 16 42 H 0.06 1.07 7.60 -2.39 -0.02 1.05 16 43 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.07 0.97 6.89 -2.39 -0.02 0.95 16 47 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.06 1.62 7.33 -2.38 -0.02 1.61 16 49 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.17 2.70 6.54 -2.91 -0.02 2.68 16 51 H 0.42 2.71 9.06 -74.05 -0.67 2.04 16 Total: -1.00 -81.18 397.61 -0.46 -81.64 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.70 Total: 36.20 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 5.33 Total: 2.57 kcal Atomic # 7 Polarization: -131.88 SS G_CDS: -5.73 Total: -137.62 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.27 Total: -30.97 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.91 Total: 48.18 kcal Total: -81.18 -0.46 -81.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276212980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.223 kcal (2) G-P(sol) polarization free energy of solvation -81.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds