Wall clock time and date at job start Wed Apr 1 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.46989 * 2 1 4 4 N 1.33693 * 126.27598 * 270.13630 * 3 2 1 5 5 C 1.30617 * 108.99909 * 180.26118 * 4 3 2 6 6 O 1.33666 * 109.15381 * 359.76605 * 5 4 3 7 7 C 1.35354 * 107.68261 * 0.02562 * 6 5 4 8 8 C 1.46717 * 126.64282 * 179.97438 * 7 6 5 9 9 O 1.21686 * 120.00144 * 187.83624 * 8 7 6 10 10 N 1.34775 * 120.00179 * 7.84686 * 8 7 6 11 11 C 1.46920 * 120.63137 * 176.74263 * 10 8 7 12 12 C 1.53196 * 108.77682 * 233.57949 * 11 10 8 13 13 C 1.53040 * 109.31423 * 305.36886 * 12 11 10 14 14 N 1.46498 * 109.46047 * 181.37109 * 13 12 11 15 15 C 1.36943 * 119.99506 * 299.99345 * 14 13 12 16 16 H 1.08000 * 120.00466 * 9.15477 * 15 14 13 17 17 C 1.38814 * 119.99555 * 189.15079 * 15 14 13 18 18 N 1.31620 * 120.00300 * 31.37612 * 17 15 14 19 19 Si 1.86802 * 119.99649 * 211.37411 * 17 15 14 20 20 H 1.48499 * 109.47230 * 95.00149 * 19 17 15 21 21 H 1.48506 * 109.47152 * 214.99802 * 19 17 15 22 22 H 1.48502 * 109.47429 * 335.00116 * 19 17 15 23 23 C 1.46498 * 120.00169 * 119.99818 * 14 13 12 24 24 C 1.53000 * 109.46873 * 84.48750 * 23 14 13 25 25 C 1.53002 * 117.49497 * 243.61945 * 24 23 14 26 26 C 1.52999 * 59.99923 * 252.51115 * 25 24 23 27 27 C 1.53040 * 109.53976 * 61.35871 * 13 12 11 28 28 C 1.46928 * 120.63139 * 356.71544 * 10 8 7 29 29 H 1.09003 * 109.47167 * 59.99622 * 1 2 3 30 30 H 1.09005 * 109.47410 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46860 * 299.99662 * 1 2 3 32 32 H 1.09003 * 109.46860 * 240.00338 * 2 1 3 33 33 H 1.09003 * 109.47167 * 120.00377 * 2 1 3 34 34 H 1.07997 * 125.42818 * 179.74666 * 5 4 3 35 35 H 1.09001 * 109.58613 * 113.79564 * 11 10 8 36 36 H 1.08997 * 109.58706 * 353.37030 * 11 10 8 37 37 H 1.09003 * 109.49624 * 65.31757 * 12 11 10 38 38 H 1.09000 * 109.50176 * 185.41080 * 12 11 10 39 39 H 1.09000 * 109.45796 * 301.34282 * 13 12 11 40 40 H 0.97000 * 119.99756 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.46747 * 204.48139 * 23 14 13 42 42 H 1.08995 * 109.47012 * 324.48560 * 23 14 13 43 43 H 1.09002 * 115.55415 * 29.32677 * 24 23 14 44 44 H 1.08997 * 117.49809 * 0.02562 * 25 24 23 45 45 H 1.08997 * 117.49734 * 145.02585 * 25 24 23 46 46 H 1.09006 * 117.50043 * 252.50795 * 26 25 24 47 47 H 1.09007 * 117.49738 * 107.49055 * 26 25 24 48 48 H 1.09005 * 109.49795 * 58.58972 * 27 13 12 49 49 H 1.09000 * 109.50054 * 178.68065 * 27 13 12 50 50 H 1.09004 * 109.58339 * 6.62554 * 28 10 8 51 51 H 1.09001 * 109.70527 * 246.27939 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2935 2.1674 -1.0778 5 6 2.7154 3.3411 -0.6899 6 8 2.7317 3.3818 0.6460 7 6 2.3018 2.1810 1.0992 8 6 2.1584 1.7746 2.5017 9 8 1.8968 0.6184 2.7764 10 7 2.3162 2.6819 3.4857 11 6 2.1059 2.3067 4.8906 12 6 1.0995 3.2783 5.5151 13 6 1.5905 4.7138 5.3146 14 7 0.6469 5.6441 5.9393 15 6 -0.6572 5.6792 5.5228 16 1 -1.0273 4.9262 4.8428 17 6 -1.5033 6.6826 5.9747 18 7 -1.0205 7.8751 6.2526 19 14 -3.3272 6.3403 6.1883 20 1 -3.5985 5.9648 7.5991 21 1 -4.1033 7.5583 5.8423 22 1 -3.7300 5.2259 5.2932 23 6 1.0983 6.5370 7.0095 24 6 1.7214 7.7929 6.3969 25 6 3.2074 8.0448 6.6606 26 6 2.1505 8.9072 7.3536 27 6 1.6893 5.0167 3.8177 28 6 2.7024 4.0648 3.1741 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 3.0053 4.1499 -1.3443 35 1 3.0517 2.3638 5.4295 36 1 1.7140 1.2910 4.9428 37 1 0.1289 3.1553 5.0346 38 1 1.0071 3.0709 6.5812 39 1 2.5723 4.8293 5.7740 40 1 -1.6119 8.5763 6.5679 41 1 0.2478 6.8191 7.6302 42 1 1.8406 6.0244 7.6213 43 1 1.3251 8.0885 5.4255 44 1 3.7411 7.3155 7.2700 45 1 3.7890 8.5061 5.8625 46 1 2.0369 9.9359 7.0114 47 1 1.9889 8.7455 8.4194 48 1 0.7131 4.8774 3.3532 49 1 2.0166 6.0466 3.6757 50 1 2.7040 4.2090 2.0936 51 1 3.6972 4.2670 3.5711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277393525.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:43 Heat of formation + Delta-G solvation = 50.464532 kcal Electronic energy + Delta-G solvation = -32125.362612 eV Core-core repulsion = 28028.704138 eV Total energy + Delta-G solvation = -4096.658474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.62226 -39.90602 -37.84204 -36.64108 -35.77028 -34.54603 -33.12783 -32.21765 -30.97234 -30.10017 -29.38922 -26.25480 -25.44977 -24.29600 -23.58589 -23.01782 -22.15779 -21.55766 -21.29763 -20.29992 -19.48203 -19.22999 -17.49230 -17.16069 -16.79735 -16.35809 -15.97388 -15.41646 -14.99753 -14.84335 -14.40759 -14.32336 -14.01207 -13.75376 -13.65093 -13.57753 -13.49719 -13.10072 -12.94635 -12.80464 -12.18587 -12.05043 -11.73049 -11.54273 -11.43184 -11.26614 -11.16359 -11.02691 -10.95860 -10.78430 -10.68760 -10.66806 -10.64211 -10.32328 -10.06937 -9.99182 -9.94005 -9.72278 -9.20990 -9.12778 -8.83258 -8.51022 -8.30699 -6.95891 -5.85097 -3.07570 0.72916 2.29740 2.30448 2.98904 3.13867 3.38366 3.47850 3.49454 3.86692 4.43826 4.47618 4.55450 4.84200 4.97253 5.10849 5.18567 5.25214 5.28642 5.31760 5.34190 5.41862 5.46997 5.52970 5.64096 5.74496 5.78120 5.85417 5.90495 5.90910 5.95852 5.99738 6.07461 6.14472 6.21324 6.24842 6.27556 6.31430 6.39268 6.50262 6.54106 6.62756 6.69442 6.83903 6.94608 6.98706 7.20811 7.27582 7.41141 7.47292 7.65858 7.82803 8.00909 8.28408 9.16889 9.84057 10.29379 11.21522 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.003285 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.032934 B = 8521.941362 C = 9389.765440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C 0.078 3.922 4 N -0.492 5.492 5 C 0.189 3.811 6 O -0.180 6.180 7 C -0.103 4.103 8 C 0.604 3.396 9 O -0.524 6.524 10 N -0.591 5.591 11 C 0.115 3.885 12 C -0.141 4.141 13 C 0.182 3.818 14 N -0.587 5.587 15 C -0.256 4.256 16 H 0.073 0.927 17 C 0.008 3.992 18 N -0.879 5.879 19 Si 0.878 3.122 20 H -0.290 1.290 21 H -0.295 1.295 22 H -0.282 1.282 23 C 0.201 3.799 24 C -0.087 4.087 25 C -0.221 4.221 26 C -0.183 4.183 27 C -0.137 4.137 28 C 0.090 3.910 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.253 0.747 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.252 0.748 41 H 0.081 0.919 42 H 0.012 0.988 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.985 -7.798 -8.474 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C -0.046 4.046 4 N -0.221 5.221 5 C -0.036 4.036 6 O -0.067 6.067 7 C -0.158 4.158 8 C 0.391 3.609 9 O -0.403 6.403 10 N -0.322 5.322 11 C -0.007 4.007 12 C -0.182 4.182 13 C 0.073 3.927 14 N -0.307 5.307 15 C -0.385 4.385 16 H 0.090 0.910 17 C -0.191 4.191 18 N -0.523 5.523 19 Si 0.708 3.292 20 H -0.217 1.217 21 H -0.222 1.222 22 H -0.207 1.207 23 C 0.076 3.924 24 C -0.108 4.108 25 C -0.258 4.258 26 C -0.221 4.221 27 C -0.177 4.177 28 C -0.032 4.032 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.269 0.731 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.030 0.970 43 H 0.126 0.874 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.092 0.908 50 H 0.117 0.883 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.699 -8.358 -8.815 15.545 hybrid contribution -0.862 0.795 0.568 1.303 sum 8.837 -7.563 -8.247 14.258 Atomic orbital electron populations 1.21651 0.93837 1.02214 1.02150 1.20174 0.96623 0.87861 1.04368 1.22021 0.98051 0.98134 0.86372 1.70332 1.16967 1.03332 1.31474 1.28450 0.97114 0.97512 0.80507 1.84717 1.64875 1.33582 1.23537 1.23018 1.11581 0.84897 0.96302 1.16487 0.77807 0.85215 0.81382 1.90816 1.50408 1.17499 1.81562 1.48064 1.66313 1.10885 1.06928 1.21795 0.99742 1.00283 0.78906 1.22408 0.98868 0.96145 1.00732 1.20187 0.92516 0.88966 0.90982 1.44216 1.06604 1.40740 1.39103 1.19037 0.84657 1.08527 1.26248 0.90950 1.24614 0.97340 0.94679 1.02440 1.70294 1.34333 1.00137 1.47504 0.86636 0.87025 0.77332 0.78212 1.21700 1.22233 1.20706 1.20342 0.96271 0.86754 0.89079 1.23009 0.90177 0.97045 1.00552 1.23079 0.94450 1.04559 1.03717 1.22620 1.04871 0.96445 0.98196 1.22393 0.98648 0.98122 0.98503 1.22441 0.98800 0.80029 1.01916 0.92713 0.91720 0.92335 0.90206 0.88025 0.73115 0.91508 0.89289 0.91206 0.90842 0.92794 0.93808 0.90056 0.97004 0.87359 0.90532 0.90819 0.90563 0.90438 0.91342 0.90823 0.88315 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.05 -0.62 6.01 -27.89 -0.17 -0.79 16 3 C 0.08 1.04 6.41 -82.47 -0.53 0.52 16 4 N -0.49 -6.12 11.26 -10.89 -0.12 -6.24 16 5 C 0.19 1.83 13.21 52.25 0.69 2.52 16 6 O -0.18 -2.15 7.28 4.39 0.03 -2.12 16 7 C -0.10 -1.44 6.87 -36.84 -0.25 -1.70 16 8 C 0.60 9.28 7.66 -12.84 -0.10 9.18 16 9 O -0.52 -8.80 14.20 5.20 0.07 -8.73 16 10 N -0.59 -8.63 2.97 -174.30 -0.52 -9.15 16 11 C 0.11 1.63 6.42 -3.71 -0.02 1.60 16 12 C -0.14 -2.34 5.31 -26.61 -0.14 -2.48 16 13 C 0.18 3.25 2.59 -67.89 -0.18 3.08 16 14 N -0.59 -12.85 2.47 -165.61 -0.41 -13.26 16 15 C -0.26 -6.35 8.39 -15.06 -0.13 -6.47 16 16 H 0.07 1.84 6.93 -52.49 -0.36 1.47 16 17 C 0.01 0.21 4.69 -17.43 -0.08 0.13 16 18 N -0.88 -23.11 9.65 55.49 0.54 -22.58 16 19 Si 0.88 20.83 29.65 -169.99 -5.04 15.79 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.20 4.37 5.11 -4.04 -0.02 4.34 16 24 C -0.09 -1.79 4.61 -90.62 -0.42 -2.21 16 25 C -0.22 -3.80 10.18 -26.73 -0.27 -4.07 16 26 C -0.18 -3.38 10.25 -26.73 -0.27 -3.66 16 27 C -0.14 -2.29 5.31 -26.61 -0.14 -2.43 16 28 C 0.09 1.24 6.31 -3.71 -0.02 1.21 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.29 6.34 -51.93 -0.33 0.96 16 34 H 0.25 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.29 7.02 -51.93 -0.36 0.92 16 37 H 0.07 1.32 7.16 -51.93 -0.37 0.95 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 40 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.08 2.01 6.17 -51.93 -0.32 1.69 16 42 H 0.01 0.24 7.77 -51.93 -0.40 -0.17 16 43 H 0.11 2.59 7.71 -51.93 -0.40 2.19 16 44 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.08 1.39 8.14 -51.92 -0.42 0.96 16 48 H 0.07 1.32 7.52 -51.93 -0.39 0.93 16 49 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 50 H 0.10 1.29 3.82 -54.90 -0.21 1.08 16 51 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 400.28 15.07 6.03 6.03 Total: -1.00 -28.52 400.28 -9.29 -37.81 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.19 Total: 4.89 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.69 Total: -2.46 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.51 Total: -51.22 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.11 Total: -10.85 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.04 Total: 15.79 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.52 -9.29 -37.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277393525.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.277 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds