Wall clock time and date at job start Wed Apr 1 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.46989 * 2 1 4 4 N 1.33693 * 126.27598 * 270.13630 * 3 2 1 5 5 C 1.30617 * 108.99909 * 180.26118 * 4 3 2 6 6 O 1.33666 * 109.15381 * 359.76605 * 5 4 3 7 7 C 1.35354 * 107.68261 * 0.02562 * 6 5 4 8 8 C 1.46717 * 126.64282 * 179.97438 * 7 6 5 9 9 O 1.21686 * 120.00144 * 187.83624 * 8 7 6 10 10 N 1.34775 * 120.00179 * 7.84686 * 8 7 6 11 11 C 1.46920 * 120.63137 * 176.74263 * 10 8 7 12 12 C 1.53196 * 108.77682 * 233.57949 * 11 10 8 13 13 C 1.53040 * 109.31423 * 305.36886 * 12 11 10 14 14 N 1.46498 * 109.46047 * 181.37109 * 13 12 11 15 15 C 1.36943 * 119.99506 * 299.99345 * 14 13 12 16 16 H 1.08000 * 120.00466 * 9.15477 * 15 14 13 17 17 C 1.38814 * 119.99555 * 189.15079 * 15 14 13 18 18 N 1.31620 * 120.00300 * 31.37612 * 17 15 14 19 19 Si 1.86802 * 119.99649 * 211.37411 * 17 15 14 20 20 H 1.48499 * 109.47230 * 95.00149 * 19 17 15 21 21 H 1.48506 * 109.47152 * 214.99802 * 19 17 15 22 22 H 1.48502 * 109.47429 * 335.00116 * 19 17 15 23 23 C 1.46498 * 120.00169 * 119.99818 * 14 13 12 24 24 C 1.53000 * 109.46873 * 84.48750 * 23 14 13 25 25 C 1.53002 * 117.49497 * 243.61945 * 24 23 14 26 26 C 1.52999 * 59.99923 * 252.51115 * 25 24 23 27 27 C 1.53040 * 109.53976 * 61.35871 * 13 12 11 28 28 C 1.46928 * 120.63139 * 356.71544 * 10 8 7 29 29 H 1.09003 * 109.47167 * 59.99622 * 1 2 3 30 30 H 1.09005 * 109.47410 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46860 * 299.99662 * 1 2 3 32 32 H 1.09003 * 109.46860 * 240.00338 * 2 1 3 33 33 H 1.09003 * 109.47167 * 120.00377 * 2 1 3 34 34 H 1.07997 * 125.42818 * 179.74666 * 5 4 3 35 35 H 1.09001 * 109.58613 * 113.79564 * 11 10 8 36 36 H 1.08997 * 109.58706 * 353.37030 * 11 10 8 37 37 H 1.09003 * 109.49624 * 65.31757 * 12 11 10 38 38 H 1.09000 * 109.50176 * 185.41080 * 12 11 10 39 39 H 1.09000 * 109.45796 * 301.34282 * 13 12 11 40 40 H 0.97000 * 119.99756 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.46747 * 204.48139 * 23 14 13 42 42 H 1.08995 * 109.47012 * 324.48560 * 23 14 13 43 43 H 1.09002 * 115.55415 * 29.32677 * 24 23 14 44 44 H 1.08997 * 117.49809 * 0.02562 * 25 24 23 45 45 H 1.08997 * 117.49734 * 145.02585 * 25 24 23 46 46 H 1.09006 * 117.50043 * 252.50795 * 26 25 24 47 47 H 1.09007 * 117.49738 * 107.49055 * 26 25 24 48 48 H 1.09005 * 109.49795 * 58.58972 * 27 13 12 49 49 H 1.09000 * 109.50054 * 178.68065 * 27 13 12 50 50 H 1.09004 * 109.58339 * 6.62554 * 28 10 8 51 51 H 1.09001 * 109.70527 * 246.27939 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2935 2.1674 -1.0778 5 6 2.7154 3.3411 -0.6899 6 8 2.7317 3.3818 0.6460 7 6 2.3018 2.1810 1.0992 8 6 2.1584 1.7746 2.5017 9 8 1.8968 0.6184 2.7764 10 7 2.3162 2.6819 3.4857 11 6 2.1059 2.3067 4.8906 12 6 1.0995 3.2783 5.5151 13 6 1.5905 4.7138 5.3146 14 7 0.6469 5.6441 5.9393 15 6 -0.6572 5.6792 5.5228 16 1 -1.0273 4.9262 4.8428 17 6 -1.5033 6.6826 5.9747 18 7 -1.0205 7.8751 6.2526 19 14 -3.3272 6.3403 6.1883 20 1 -3.5985 5.9648 7.5991 21 1 -4.1033 7.5583 5.8423 22 1 -3.7300 5.2259 5.2932 23 6 1.0983 6.5370 7.0095 24 6 1.7214 7.7929 6.3969 25 6 3.2074 8.0448 6.6606 26 6 2.1505 8.9072 7.3536 27 6 1.6893 5.0167 3.8177 28 6 2.7024 4.0648 3.1741 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 3.0053 4.1499 -1.3443 35 1 3.0517 2.3638 5.4295 36 1 1.7140 1.2910 4.9428 37 1 0.1289 3.1553 5.0346 38 1 1.0071 3.0709 6.5812 39 1 2.5723 4.8293 5.7740 40 1 -1.6119 8.5763 6.5679 41 1 0.2478 6.8191 7.6302 42 1 1.8406 6.0244 7.6213 43 1 1.3251 8.0885 5.4255 44 1 3.7411 7.3155 7.2700 45 1 3.7890 8.5061 5.8625 46 1 2.0369 9.9359 7.0114 47 1 1.9889 8.7455 8.4194 48 1 0.7131 4.8774 3.3532 49 1 2.0166 6.0466 3.6757 50 1 2.7040 4.2090 2.0936 51 1 3.6972 4.2670 3.5711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277393525.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:42 Heat of formation + Delta-G solvation = 34.192987 kcal Electronic energy + Delta-G solvation = -32126.068199 eV Core-core repulsion = 28028.704138 eV Total energy + Delta-G solvation = -4097.364061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -44.53729 -41.10182 -39.26762 -38.03304 -36.81879 -36.02973 -34.11154 -33.80339 -32.23139 -31.61356 -30.49418 -27.95601 -26.81672 -25.45707 -24.59532 -24.25289 -23.50333 -22.97829 -22.43130 -21.49945 -21.10210 -20.53845 -18.69668 -18.20548 -17.96240 -17.74667 -17.12616 -16.99880 -16.12341 -16.06542 -15.95501 -15.51513 -15.31473 -15.28356 -15.06245 -14.96371 -14.54140 -14.45989 -14.20917 -13.75015 -13.62491 -13.37760 -13.22958 -13.18330 -12.67791 -12.58618 -12.42767 -12.31347 -12.23929 -12.22119 -12.18212 -12.10399 -12.06400 -11.81717 -11.76094 -11.40695 -11.27236 -11.15301 -10.76918 -10.50210 -10.15087 -10.08345 -9.66085 -8.77173 -7.81286 -5.01644 -0.23819 1.34924 1.40721 1.43649 1.50877 1.54131 1.89424 2.06373 2.56224 3.10058 3.27984 3.33335 3.40916 3.56944 3.63013 3.94567 4.11558 4.17581 4.20597 4.27972 4.30696 4.37695 4.38204 4.42366 4.44144 4.46885 4.55489 4.65074 4.68533 4.79155 4.84083 4.84832 4.93776 4.95067 4.96656 5.03827 5.12563 5.14976 5.15980 5.25473 5.32811 5.40136 5.44678 5.49623 5.54954 5.62322 5.69003 5.82215 5.97533 6.16385 6.37801 6.52283 6.86785 7.25160 8.01403 8.40593 9.22567 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011887 B = 0.003285 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.032934 B = 8521.941362 C = 9389.765440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C 0.077 3.923 4 N -0.520 5.520 5 C 0.216 3.784 6 O -0.185 6.185 7 C -0.132 4.132 8 C 0.601 3.399 9 O -0.547 6.547 10 N -0.594 5.594 11 C 0.122 3.878 12 C -0.131 4.131 13 C 0.178 3.822 14 N -0.598 5.598 15 C -0.245 4.245 16 H 0.060 0.940 17 C -0.034 4.034 18 N -0.894 5.894 19 Si 0.921 3.079 20 H -0.294 1.294 21 H -0.302 1.302 22 H -0.283 1.283 23 C 0.207 3.793 24 C -0.107 4.107 25 C -0.186 4.186 26 C -0.184 4.184 27 C -0.124 4.124 28 C 0.100 3.900 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.305 0.695 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.244 0.756 41 H 0.044 0.956 42 H 0.032 0.968 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.034 0.966 49 H 0.065 0.935 50 H 0.110 0.890 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.500 -8.039 -9.408 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 C -0.046 4.046 4 N -0.248 5.248 5 C -0.007 4.007 6 O -0.072 6.072 7 C -0.187 4.187 8 C 0.389 3.611 9 O -0.427 6.427 10 N -0.325 5.325 11 C 0.000 4.000 12 C -0.171 4.171 13 C 0.071 3.929 14 N -0.318 5.318 15 C -0.375 4.375 16 H 0.077 0.923 17 C -0.231 4.231 18 N -0.539 5.539 19 Si 0.752 3.248 20 H -0.222 1.222 21 H -0.230 1.230 22 H -0.209 1.209 23 C 0.082 3.918 24 C -0.127 4.127 25 C -0.223 4.223 26 C -0.222 4.222 27 C -0.164 4.164 28 C -0.021 4.021 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.320 0.680 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.100 0.900 48 H 0.053 0.947 49 H 0.084 0.916 50 H 0.127 0.873 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.228 -8.620 -9.758 17.862 hybrid contribution -1.621 0.869 0.754 1.987 sum 10.607 -7.751 -9.004 15.927 Atomic orbital electron populations 1.21603 0.93582 1.03109 1.00988 1.20204 0.96766 0.87530 1.04587 1.22283 0.97099 0.98611 0.86648 1.70376 1.18663 1.04489 1.31252 1.29681 0.93504 0.97639 0.79910 1.84655 1.65100 1.32785 1.24677 1.22732 1.14140 0.86017 0.95783 1.16669 0.77288 0.85036 0.82080 1.90793 1.51407 1.18385 1.82157 1.48125 1.66287 1.11129 1.06962 1.21732 1.00145 0.99122 0.78983 1.22251 0.98058 0.96060 1.00725 1.20405 0.92455 0.88496 0.91519 1.44351 1.06487 1.41467 1.39487 1.19049 0.86277 1.07219 1.24906 0.92252 1.25014 0.99301 0.94984 1.03775 1.70400 1.34349 1.00256 1.48912 0.85948 0.84713 0.76528 0.77565 1.22201 1.23008 1.20900 1.20188 0.95338 0.87491 0.88822 1.22559 0.93281 0.97563 0.99335 1.23108 0.92417 1.03468 1.03289 1.22665 1.05322 0.96104 0.98110 1.22179 0.97938 0.98629 0.97639 1.22403 0.98603 0.78618 1.02519 0.92537 0.89870 0.94653 0.88597 0.89081 0.68021 0.88731 0.89654 0.94368 0.90704 0.90842 0.94682 0.93753 0.95008 0.91213 0.88595 0.89226 0.90483 0.89968 0.94680 0.91603 0.87304 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.89 71.98 0.71 -2.31 16 2 C -0.05 -1.23 6.01 29.85 0.18 -1.05 16 3 C 0.08 1.99 6.41 41.83 0.27 2.25 16 4 N -0.52 -11.80 11.26 -303.13 -3.41 -15.21 16 5 C 0.22 3.50 13.21 130.42 1.72 5.23 16 6 O -0.18 -4.00 7.28 -7.22 -0.05 -4.05 16 7 C -0.13 -3.57 6.87 24.04 0.17 -3.40 16 8 C 0.60 18.17 7.66 86.46 0.66 18.83 16 9 O -0.55 -18.44 14.20 -4.30 -0.06 -18.50 16 10 N -0.59 -16.67 2.97 -823.58 -2.45 -19.12 16 11 C 0.12 3.30 6.42 86.36 0.55 3.85 16 12 C -0.13 -4.29 5.31 30.67 0.16 -4.13 16 13 C 0.18 6.23 2.59 45.02 0.12 6.34 16 14 N -0.60 -26.38 2.47 -677.88 -1.67 -28.06 16 15 C -0.24 -12.47 8.39 84.03 0.71 -11.76 16 16 H 0.06 3.14 6.93 -2.91 -0.02 3.12 16 17 C -0.03 -1.79 4.69 84.86 0.40 -1.39 16 18 N -0.89 -48.48 9.65 21.65 0.21 -48.27 16 19 Si 0.92 44.18 29.65 68.60 2.03 46.22 16 20 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 21 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 22 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 23 C 0.21 8.96 5.11 86.38 0.44 9.40 16 24 C -0.11 -4.33 4.61 -10.79 -0.05 -4.38 16 25 C -0.19 -5.83 10.18 30.59 0.31 -5.52 16 26 C -0.18 -6.55 10.25 30.59 0.31 -6.23 16 27 C -0.12 -4.09 5.31 30.67 0.16 -3.93 16 28 C 0.10 2.55 6.31 86.36 0.55 3.10 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 2.31 6.34 -2.39 -0.02 2.30 16 34 H 0.31 1.05 8.06 -2.91 -0.02 1.03 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 2.41 7.02 -2.39 -0.02 2.39 16 37 H 0.04 1.48 7.16 -2.39 -0.02 1.46 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.07 2.31 7.87 -2.39 -0.02 2.29 16 40 H 0.24 13.22 8.31 -92.71 -0.77 12.45 16 41 H 0.04 2.24 6.17 -2.38 -0.01 2.22 16 42 H 0.03 1.23 7.77 -2.39 -0.02 1.21 16 43 H 0.07 3.40 7.71 -2.39 -0.02 3.38 16 44 H 0.10 2.68 8.03 -2.39 -0.02 2.66 16 45 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 47 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 48 H 0.03 1.38 7.52 -2.38 -0.02 1.36 16 49 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.11 2.62 3.82 -49.49 -0.19 2.43 16 51 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -64.72 400.28 2.71 -62.00 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.75 Total: 20.09 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 7.37 Total: 4.90 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -7.33 Total: -110.66 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.11 Total: -22.55 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.22 kcal Total: -64.72 2.71 -62.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277393525.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.198 kcal (2) G-P(sol) polarization free energy of solvation -64.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds