Wall clock time and date at job start Wed Apr 1 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46953 * 2 1 4 4 N 1.46503 * 109.44993 * 305.18780 * 3 2 1 5 5 C 1.36939 * 119.99972 * 296.05852 * 4 3 2 6 6 H 1.08006 * 119.99650 * 5.51803 * 5 4 3 7 7 C 1.38809 * 120.00079 * 185.51437 * 5 4 3 8 8 N 1.31621 * 119.99835 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00004 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47429 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47235 * 120.00465 * 9 7 5 12 12 H 1.48503 * 109.47019 * 240.00197 * 9 7 5 13 13 C 1.53041 * 109.45882 * 185.22486 * 3 2 1 14 14 C 1.53191 * 109.31302 * 178.61467 * 13 3 2 15 15 N 1.46923 * 108.77897 * 54.63302 * 14 13 3 16 16 C 1.34777 * 120.63407 * 126.40737 * 15 14 13 17 17 O 1.21282 * 120.00305 * 179.97438 * 16 15 14 18 18 C 1.50698 * 119.99966 * 359.97438 * 16 15 14 19 19 C 1.50698 * 109.47249 * 179.97438 * 18 16 15 20 20 C 1.37987 * 120.45452 * 264.71668 * 19 18 16 21 21 N 1.31948 * 120.82760 * 179.75310 * 20 19 18 22 22 C 1.31980 * 121.85664 * 0.53509 * 21 20 19 23 23 C 1.37953 * 120.82408 * 359.73314 * 22 21 20 24 24 C 1.39245 * 120.45477 * 84.99520 * 19 18 16 25 25 O 1.35740 * 120.84922 * 359.95492 * 24 19 18 26 26 C 1.42896 * 117.00309 * 179.97438 * 25 24 19 27 27 C 1.46934 * 118.73651 * 306.39662 * 15 14 13 28 28 C 1.53040 * 109.46356 * 65.15677 * 3 2 1 29 29 H 1.08994 * 109.47180 * 174.16246 * 1 2 3 30 30 H 1.09001 * 109.47280 * 294.16588 * 1 2 3 31 31 H 1.09005 * 109.47400 * 54.16207 * 1 2 3 32 32 H 1.08997 * 109.47423 * 239.99768 * 2 1 3 33 33 H 1.09000 * 109.47349 * 119.99626 * 2 1 3 34 34 H 0.96996 * 120.00172 * 116.05919 * 4 3 2 35 35 H 0.96997 * 119.99867 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.49678 * 298.56534 * 13 3 2 37 37 H 1.08997 * 109.50188 * 58.65678 * 13 3 2 38 38 H 1.09006 * 109.58776 * 174.41920 * 14 13 3 39 39 H 1.08997 * 109.58644 * 294.84589 * 14 13 3 40 40 H 1.09008 * 109.46967 * 299.99148 * 18 16 15 41 41 H 1.08995 * 109.47330 * 59.99129 * 18 16 15 42 42 H 1.08003 * 119.58851 * 359.97438 * 20 19 18 43 43 H 1.07999 * 119.58674 * 179.74961 * 22 21 20 44 44 H 1.08000 * 120.44943 * 180.02562 * 23 22 21 45 45 H 1.08991 * 109.47322 * 300.00902 * 26 25 24 46 46 H 1.09011 * 109.46436 * 60.00416 * 26 25 24 47 47 H 1.08997 * 109.47368 * 180.02562 * 26 25 24 48 48 H 1.08996 * 109.58216 * 293.81617 * 27 15 14 49 49 H 1.08995 * 109.58400 * 173.39500 * 27 15 14 50 50 H 1.09003 * 109.49430 * 301.33842 * 28 3 2 51 51 H 1.08996 * 109.49526 * 61.39794 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4520 2.1678 -1.1290 5 6 1.7401 1.7867 -2.4123 6 1 2.3278 0.8987 -2.5929 7 6 1.2768 2.5416 -3.4811 8 7 0.5610 3.6240 -3.2610 9 14 1.6693 2.0214 -5.2317 10 1 2.4832 0.7796 -5.2084 11 1 0.4048 1.7713 -5.9691 12 1 2.4324 3.1001 -5.9094 13 6 3.5647 1.4443 -0.1314 14 6 4.0686 2.8905 -0.1659 15 7 3.5644 3.5954 1.0205 16 6 4.4103 4.2447 1.8447 17 8 3.9817 4.8233 2.8206 18 6 5.8889 4.2519 1.5536 19 6 6.6066 5.0413 2.6179 20 6 6.9040 6.3740 2.4192 21 7 7.5278 7.0734 3.3480 22 6 7.9014 6.5337 4.4931 23 6 7.6455 5.2058 4.7654 24 6 6.9840 4.4343 3.8130 25 8 6.7136 3.1243 4.0441 26 6 7.1382 2.5855 5.2976 27 6 2.1203 3.5793 1.2912 28 6 1.6383 2.1254 1.3094 29 1 -0.3633 -1.0223 -0.1045 30 1 -0.3634 0.4207 0.9376 31 1 -0.3634 0.6017 -0.8331 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.8586 2.9179 -0.9675 35 1 0.2375 4.1517 -4.0078 36 1 4.0039 0.9262 0.7212 37 1 3.8511 0.9371 -1.0527 38 1 5.1586 2.8979 -0.1595 39 1 3.7030 3.3835 -1.0666 40 1 6.2627 3.2279 1.5462 41 1 6.0655 4.7101 0.5806 42 1 6.6194 6.8516 1.4933 43 1 8.4135 7.1394 5.2260 44 1 7.9535 4.7705 5.7046 45 1 8.2203 2.6815 5.3865 46 1 6.6572 3.1315 6.1093 47 1 6.8613 1.5328 5.3531 48 1 1.5959 4.1284 0.5093 49 1 1.9249 4.0412 2.2589 50 1 0.5535 2.1030 1.4135 51 1 2.0951 1.6005 2.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327454581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:43 Heat of formation + Delta-G solvation = -25.184099 kcal Electronic energy + Delta-G solvation = -31983.675794 eV Core-core repulsion = 27883.736949 eV Total energy + Delta-G solvation = -4099.938844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.96111 -39.80132 -38.36088 -37.91448 -34.68705 -33.47945 -32.61159 -31.35964 -30.77605 -30.26132 -29.09496 -28.12031 -27.54242 -24.89566 -23.80762 -23.18849 -23.06214 -22.17239 -21.39152 -19.34599 -18.50088 -17.97324 -17.31180 -17.05357 -16.90638 -16.02876 -15.72088 -15.25867 -15.04843 -14.96612 -14.56046 -14.38515 -14.08647 -13.93189 -13.77756 -13.61759 -13.45890 -13.28287 -12.96105 -12.86793 -12.49565 -12.24761 -12.10872 -11.93105 -11.79774 -11.56036 -11.32630 -11.23249 -11.08485 -10.91882 -10.69714 -10.63009 -10.36052 -10.20719 -10.04796 -9.65966 -9.63941 -9.56873 -9.39630 -9.22618 -8.93665 -8.79445 -8.12498 -6.95196 -5.79185 -3.07568 0.95363 1.23780 2.91396 2.96338 3.35576 3.39818 3.46136 3.48603 3.75416 4.28507 4.47097 4.56084 4.62295 4.73734 4.83328 4.88378 4.88816 5.11101 5.16529 5.24846 5.27085 5.36117 5.40513 5.49221 5.56142 5.63557 5.65513 5.71893 5.79656 5.81503 5.91981 5.97786 6.02490 6.14862 6.17714 6.24223 6.28008 6.41657 6.45550 6.55576 6.58593 6.66868 6.80074 6.88228 6.97211 6.99659 7.09314 7.17358 7.70752 7.84580 7.89746 8.39440 8.52158 9.51024 10.08212 10.44144 11.43078 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.002934 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.952808 B = 9541.976168 C =10474.487902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.203 3.797 4 N -0.713 5.713 5 C -0.229 4.229 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.899 3.101 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.293 1.293 13 C -0.133 4.133 14 C 0.114 3.886 15 N -0.598 5.598 16 C 0.518 3.482 17 O -0.552 6.552 18 C -0.090 4.090 19 C -0.142 4.142 20 C 0.144 3.856 21 N -0.508 5.508 22 C 0.130 3.870 23 C -0.263 4.263 24 C 0.182 3.818 25 O -0.304 6.304 26 C 0.026 3.974 27 C 0.117 3.883 28 C -0.129 4.129 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.383 0.617 35 H 0.253 0.747 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.137 0.863 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.103 0.897 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.595 -1.971 15.344 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.111 3.889 4 N -0.354 5.354 5 C -0.360 4.360 6 H 0.087 0.913 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.730 3.270 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.221 1.221 13 C -0.173 4.173 14 C -0.008 4.008 15 N -0.330 5.330 16 C 0.305 3.695 17 O -0.430 6.430 18 C -0.130 4.130 19 C -0.145 4.145 20 C -0.012 4.012 21 N -0.219 5.219 22 C -0.027 4.027 23 C -0.284 4.284 24 C 0.128 3.872 25 O -0.215 6.215 26 C -0.068 4.068 27 C -0.005 4.005 28 C -0.168 4.168 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.218 0.782 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.178 0.822 43 H 0.173 0.827 44 H 0.155 0.845 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.121 0.879 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.492 -1.038 15.422 20.517 hybrid contribution -0.107 -1.104 -0.660 1.291 sum 13.385 -2.142 14.762 20.042 Atomic orbital electron populations 1.21667 0.96143 1.00075 1.02012 1.21917 0.96383 0.98247 0.99835 1.19533 0.90738 0.91077 0.87550 1.42475 1.55495 1.37103 1.00370 1.19121 1.27617 1.06319 0.82948 0.91256 1.24688 1.01124 0.97392 0.97507 1.69660 1.40782 1.17396 1.30029 0.86247 0.77432 0.77488 0.85783 1.20687 1.22121 1.22051 1.22260 0.98503 0.95400 1.01145 1.21765 0.97322 0.93507 0.88208 1.48075 1.07450 1.51631 1.25857 1.20308 0.87948 0.78647 0.82554 1.90655 1.78628 1.45150 1.28594 1.20441 0.92400 1.02039 0.98125 1.19796 1.04090 0.95772 0.94885 1.22536 0.91912 0.88923 0.97812 1.67727 1.13266 1.38680 1.02261 1.22505 0.94616 0.91733 0.93816 1.22146 1.07770 0.97166 1.01339 1.19100 0.91442 0.83536 0.93079 1.86089 1.75744 1.21650 1.38016 1.23122 0.99730 0.99927 0.84066 1.21541 0.79725 0.97211 1.02008 1.22099 1.01235 0.95486 0.97948 0.94808 0.94236 0.90468 0.92335 0.94202 0.78177 0.93654 0.93426 0.90637 0.91480 0.88911 0.87695 0.87714 0.82203 0.82720 0.84537 0.92489 0.92374 0.87893 0.90506 0.90209 0.90750 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.41 37.15 0.35 -2.05 16 2 C -0.12 -2.09 4.78 -26.73 -0.13 -2.22 16 3 C 0.20 3.55 0.44 -131.77 -0.06 3.49 16 4 N -0.71 -15.37 2.99 -47.19 -0.14 -15.51 16 5 C -0.23 -5.57 8.59 -15.06 -0.13 -5.70 16 6 H 0.07 1.67 6.78 -52.48 -0.36 1.32 16 7 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 8 N -0.93 -26.22 13.07 55.49 0.73 -25.49 16 9 Si 0.90 21.19 29.55 -169.99 -5.02 16.16 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 C -0.13 -2.15 4.64 -26.61 -0.12 -2.27 16 14 C 0.11 1.80 6.08 -3.71 -0.02 1.78 16 15 N -0.60 -9.79 2.97 -172.77 -0.51 -10.30 16 16 C 0.52 8.47 7.69 -10.99 -0.08 8.39 16 17 O -0.55 -10.81 15.45 5.56 0.09 -10.72 16 18 C -0.09 -1.14 3.95 -29.04 -0.11 -1.26 16 19 C -0.14 -1.88 4.40 -104.34 -0.46 -2.34 16 20 C 0.14 1.85 10.83 -17.59 -0.19 1.66 16 21 N -0.51 -6.65 10.36 -13.33 -0.14 -6.79 16 22 C 0.13 1.41 11.17 -17.59 -0.20 1.21 16 23 C -0.26 -2.75 9.11 -39.30 -0.36 -3.11 16 24 C 0.18 2.29 6.70 -38.82 -0.26 2.03 16 25 O -0.30 -3.64 9.77 -18.93 -0.18 -3.82 16 26 C 0.03 0.20 9.84 101.05 0.99 1.19 16 27 C 0.12 2.01 6.16 -3.71 -0.02 1.99 16 28 C -0.13 -2.09 4.73 -26.62 -0.13 -2.21 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.61 6.83 -51.93 -0.35 0.26 16 31 H 0.08 1.55 7.26 -51.93 -0.38 1.17 16 32 H 0.06 1.06 7.56 -51.93 -0.39 0.67 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.38 9.13 6.61 -40.82 -0.27 8.87 16 35 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.29 7.22 -51.93 -0.37 0.91 16 38 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 39 H 0.09 1.76 7.62 -51.93 -0.40 1.36 16 40 H 0.10 1.23 7.32 -51.92 -0.38 0.85 16 41 H 0.10 1.12 7.86 -51.93 -0.41 0.71 16 42 H 0.16 1.75 8.06 -52.48 -0.42 1.33 16 43 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.14 1.02 6.47 -52.49 -0.34 0.68 16 45 H 0.06 0.32 7.71 -51.93 -0.40 -0.08 16 46 H 0.06 0.40 7.71 -51.92 -0.40 0.00 16 47 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 49 H 0.08 1.39 7.00 -51.93 -0.36 1.03 16 50 H 0.07 1.19 6.64 -51.93 -0.34 0.84 16 51 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 398.21 15.07 6.00 6.00 Total: -1.00 -31.28 398.21 -8.14 -39.42 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.92 Total: 10.85 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.03 Total: 0.20 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.07 Total: -58.09 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.10 Total: -14.54 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.28 -8.14 -39.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327454581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.240 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds