Wall clock time and date at job start Wed Apr 1 2020 05:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46953 * 2 1 4 4 N 1.46503 * 109.44993 * 305.18780 * 3 2 1 5 5 C 1.36939 * 119.99972 * 296.05852 * 4 3 2 6 6 H 1.08006 * 119.99650 * 5.51803 * 5 4 3 7 7 C 1.38809 * 120.00079 * 185.51437 * 5 4 3 8 8 N 1.31621 * 119.99835 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00004 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47429 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47235 * 120.00465 * 9 7 5 12 12 H 1.48503 * 109.47019 * 240.00197 * 9 7 5 13 13 C 1.53041 * 109.45882 * 185.22486 * 3 2 1 14 14 C 1.53191 * 109.31302 * 178.61467 * 13 3 2 15 15 N 1.46923 * 108.77897 * 54.63302 * 14 13 3 16 16 C 1.34777 * 120.63407 * 126.40737 * 15 14 13 17 17 O 1.21282 * 120.00305 * 179.97438 * 16 15 14 18 18 C 1.50698 * 119.99966 * 359.97438 * 16 15 14 19 19 C 1.50698 * 109.47249 * 179.97438 * 18 16 15 20 20 C 1.37987 * 120.45452 * 264.71668 * 19 18 16 21 21 N 1.31948 * 120.82760 * 179.75310 * 20 19 18 22 22 C 1.31980 * 121.85664 * 0.53509 * 21 20 19 23 23 C 1.37953 * 120.82408 * 359.73314 * 22 21 20 24 24 C 1.39245 * 120.45477 * 84.99520 * 19 18 16 25 25 O 1.35740 * 120.84922 * 359.95492 * 24 19 18 26 26 C 1.42896 * 117.00309 * 179.97438 * 25 24 19 27 27 C 1.46934 * 118.73651 * 306.39662 * 15 14 13 28 28 C 1.53040 * 109.46356 * 65.15677 * 3 2 1 29 29 H 1.08994 * 109.47180 * 174.16246 * 1 2 3 30 30 H 1.09001 * 109.47280 * 294.16588 * 1 2 3 31 31 H 1.09005 * 109.47400 * 54.16207 * 1 2 3 32 32 H 1.08997 * 109.47423 * 239.99768 * 2 1 3 33 33 H 1.09000 * 109.47349 * 119.99626 * 2 1 3 34 34 H 0.96996 * 120.00172 * 116.05919 * 4 3 2 35 35 H 0.96997 * 119.99867 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.49678 * 298.56534 * 13 3 2 37 37 H 1.08997 * 109.50188 * 58.65678 * 13 3 2 38 38 H 1.09006 * 109.58776 * 174.41920 * 14 13 3 39 39 H 1.08997 * 109.58644 * 294.84589 * 14 13 3 40 40 H 1.09008 * 109.46967 * 299.99148 * 18 16 15 41 41 H 1.08995 * 109.47330 * 59.99129 * 18 16 15 42 42 H 1.08003 * 119.58851 * 359.97438 * 20 19 18 43 43 H 1.07999 * 119.58674 * 179.74961 * 22 21 20 44 44 H 1.08000 * 120.44943 * 180.02562 * 23 22 21 45 45 H 1.08991 * 109.47322 * 300.00902 * 26 25 24 46 46 H 1.09011 * 109.46436 * 60.00416 * 26 25 24 47 47 H 1.08997 * 109.47368 * 180.02562 * 26 25 24 48 48 H 1.08996 * 109.58216 * 293.81617 * 27 15 14 49 49 H 1.08995 * 109.58400 * 173.39500 * 27 15 14 50 50 H 1.09003 * 109.49430 * 301.33842 * 28 3 2 51 51 H 1.08996 * 109.49526 * 61.39794 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4520 2.1678 -1.1290 5 6 1.7401 1.7867 -2.4123 6 1 2.3278 0.8987 -2.5929 7 6 1.2768 2.5416 -3.4811 8 7 0.5610 3.6240 -3.2610 9 14 1.6693 2.0214 -5.2317 10 1 2.4832 0.7796 -5.2084 11 1 0.4048 1.7713 -5.9691 12 1 2.4324 3.1001 -5.9094 13 6 3.5647 1.4443 -0.1314 14 6 4.0686 2.8905 -0.1659 15 7 3.5644 3.5954 1.0205 16 6 4.4103 4.2447 1.8447 17 8 3.9817 4.8233 2.8206 18 6 5.8889 4.2519 1.5536 19 6 6.6066 5.0413 2.6179 20 6 6.9040 6.3740 2.4192 21 7 7.5278 7.0734 3.3480 22 6 7.9014 6.5337 4.4931 23 6 7.6455 5.2058 4.7654 24 6 6.9840 4.4343 3.8130 25 8 6.7136 3.1243 4.0441 26 6 7.1382 2.5855 5.2976 27 6 2.1203 3.5793 1.2912 28 6 1.6383 2.1254 1.3094 29 1 -0.3633 -1.0223 -0.1045 30 1 -0.3634 0.4207 0.9376 31 1 -0.3634 0.6017 -0.8331 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.8586 2.9179 -0.9675 35 1 0.2375 4.1517 -4.0078 36 1 4.0039 0.9262 0.7212 37 1 3.8511 0.9371 -1.0527 38 1 5.1586 2.8979 -0.1595 39 1 3.7030 3.3835 -1.0666 40 1 6.2627 3.2279 1.5462 41 1 6.0655 4.7101 0.5806 42 1 6.6194 6.8516 1.4933 43 1 8.4135 7.1394 5.2260 44 1 7.9535 4.7705 5.7046 45 1 8.2203 2.6815 5.3865 46 1 6.6572 3.1315 6.1093 47 1 6.8613 1.5328 5.3531 48 1 1.5959 4.1284 0.5093 49 1 1.9249 4.0412 2.2589 50 1 0.5535 2.1030 1.4135 51 1 2.0951 1.6005 2.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327454581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:42 Heat of formation + Delta-G solvation = -44.073595 kcal Electronic energy + Delta-G solvation = -31984.494904 eV Core-core repulsion = 27883.736949 eV Total energy + Delta-G solvation = -4100.757954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.88336 -41.06324 -39.37073 -39.11100 -36.14998 -34.55928 -34.31483 -32.19559 -32.10690 -31.69197 -30.76534 -29.00800 -28.32874 -26.33156 -25.55517 -24.42132 -23.88452 -23.34820 -22.66404 -20.66608 -19.51633 -19.22757 -18.87036 -18.20888 -18.13796 -16.99417 -16.68742 -16.59975 -16.21572 -15.96256 -15.85267 -15.64486 -15.35024 -15.27715 -15.16199 -14.77914 -14.66861 -14.33862 -14.32663 -14.15060 -13.82216 -13.49556 -13.18673 -13.05747 -12.85950 -12.84960 -12.77045 -12.55627 -12.46091 -12.25052 -12.12193 -12.07127 -12.00050 -11.78235 -11.51668 -11.35871 -10.97500 -10.83634 -10.71688 -10.51973 -10.08777 -9.70905 -9.53571 -8.79892 -7.80302 -5.04983 0.09371 0.36421 1.50590 1.53472 1.60353 1.69027 2.11910 2.20279 2.65072 2.83784 3.47166 3.54490 3.65459 3.69711 3.82455 3.88235 3.94464 3.99062 4.11408 4.20519 4.22966 4.31619 4.35130 4.36256 4.41968 4.47626 4.60116 4.63029 4.66670 4.70111 4.73678 4.79400 4.81245 4.86119 4.92276 4.94544 5.07458 5.10324 5.18466 5.22590 5.29555 5.41509 5.43158 5.58205 5.59614 5.67673 5.72429 5.78328 6.22946 6.41902 6.55728 7.03541 7.23168 7.49324 8.26062 8.49734 9.43482 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.002934 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.952808 B = 9541.976168 C =10474.487902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.195 3.805 4 N -0.716 5.716 5 C -0.198 4.198 6 H 0.076 0.924 7 C -0.074 4.074 8 N -0.970 5.970 9 Si 0.951 3.049 10 H -0.266 1.266 11 H -0.307 1.307 12 H -0.302 1.302 13 C -0.129 4.129 14 C 0.120 3.880 15 N -0.598 5.598 16 C 0.516 3.484 17 O -0.587 6.587 18 C -0.081 4.081 19 C -0.163 4.163 20 C 0.130 3.870 21 N -0.533 5.533 22 C 0.124 3.876 23 C -0.260 4.260 24 C 0.169 3.831 25 O -0.324 6.324 26 C 0.017 3.983 27 C 0.121 3.879 28 C -0.118 4.118 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.370 0.630 35 H 0.243 0.757 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.168 0.832 43 H 0.186 0.814 44 H 0.168 0.832 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.118 0.882 48 H 0.050 0.950 49 H 0.074 0.926 50 H 0.074 0.926 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.848 -3.901 17.284 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.105 3.895 4 N -0.356 5.356 5 C -0.330 4.330 6 H 0.094 0.906 7 C -0.266 4.266 8 N -0.622 5.622 9 Si 0.783 3.217 10 H -0.190 1.190 11 H -0.235 1.235 12 H -0.230 1.230 13 C -0.168 4.168 14 C -0.003 4.003 15 N -0.330 5.330 16 C 0.306 3.694 17 O -0.468 6.468 18 C -0.121 4.121 19 C -0.167 4.167 20 C -0.025 4.025 21 N -0.245 5.245 22 C -0.032 4.032 23 C -0.281 4.281 24 C 0.115 3.885 25 O -0.235 6.235 26 C -0.077 4.077 27 C -0.002 4.002 28 C -0.156 4.156 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.203 0.797 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.185 0.815 43 H 0.203 0.797 44 H 0.185 0.815 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.136 0.864 48 H 0.068 0.932 49 H 0.093 0.907 50 H 0.093 0.907 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.788 -3.031 17.384 23.678 hybrid contribution -0.779 -0.558 -1.082 1.446 sum 15.009 -3.590 16.302 22.448 Atomic orbital electron populations 1.21591 0.96348 1.00391 1.01095 1.21871 0.96139 0.97337 1.00608 1.19818 0.91693 0.91276 0.86675 1.42598 1.55338 1.36886 1.00791 1.19379 1.24684 1.05066 0.83907 0.90606 1.25265 1.02705 0.98171 1.00460 1.69805 1.43357 1.19048 1.30002 0.85379 0.76547 0.77336 0.82406 1.18994 1.23530 1.23032 1.22206 0.97073 0.95660 1.01908 1.21704 0.99268 0.92792 0.86488 1.48123 1.07063 1.51753 1.26045 1.20944 0.89333 0.77428 0.81715 1.90633 1.79527 1.46465 1.30153 1.20430 0.89406 1.03182 0.99085 1.19904 1.05025 0.96057 0.95690 1.22734 0.92242 0.89168 0.98384 1.67746 1.14126 1.39391 1.03249 1.23085 0.94028 0.92448 0.93623 1.22474 1.06684 0.96863 1.02036 1.19343 0.91609 0.84194 0.93322 1.86051 1.76093 1.21292 1.40071 1.23424 1.01123 1.00612 0.82574 1.21372 0.80490 0.97670 1.00668 1.22007 1.01392 0.94593 0.97657 0.93249 0.92925 0.94240 0.93560 0.91312 0.79743 0.94794 0.90863 0.91268 0.87988 0.92494 0.86188 0.85846 0.81509 0.79671 0.81505 0.90496 0.91953 0.86362 0.93195 0.90714 0.90736 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.41 71.98 0.68 -3.75 16 2 C -0.12 -3.75 4.78 30.59 0.15 -3.61 16 3 C 0.20 6.56 0.44 3.63 0.00 6.56 16 4 N -0.72 -31.10 2.99 -303.21 -0.91 -32.01 16 5 C -0.20 -9.64 8.59 84.03 0.72 -8.92 16 6 H 0.08 3.57 6.78 -2.91 -0.02 3.55 16 7 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 8 N -0.97 -56.67 13.07 21.65 0.28 -56.39 16 9 Si 0.95 44.29 29.55 68.60 2.03 46.32 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.31 -14.81 7.11 99.48 0.71 -14.11 16 12 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 13 C -0.13 -3.85 4.64 30.67 0.14 -3.71 16 14 C 0.12 3.60 6.08 86.36 0.53 4.13 16 15 N -0.60 -19.09 2.97 -818.92 -2.43 -21.52 16 16 C 0.52 16.42 7.69 87.66 0.67 17.09 16 17 O -0.59 -22.89 15.45 -3.04 -0.05 -22.93 16 18 C -0.08 -1.93 3.95 29.10 0.12 -1.82 16 19 C -0.16 -4.13 4.40 -19.68 -0.09 -4.22 16 20 C 0.13 3.28 10.83 84.62 0.92 4.20 16 21 N -0.53 -13.47 10.36 -196.08 -2.03 -15.50 16 22 C 0.12 2.44 11.17 84.60 0.95 3.39 16 23 C -0.26 -4.82 9.11 22.45 0.20 -4.61 16 24 C 0.17 3.95 6.70 22.76 0.15 4.10 16 25 O -0.32 -7.00 9.77 -90.64 -0.89 -7.88 16 26 C 0.02 0.20 9.84 113.37 1.12 1.31 16 27 C 0.12 4.16 6.16 86.36 0.53 4.69 16 28 C -0.12 -3.65 4.73 30.67 0.15 -3.50 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.54 6.83 -2.39 -0.02 1.52 16 31 H 0.04 1.57 7.26 -2.38 -0.02 1.55 16 32 H 0.05 1.56 7.56 -2.39 -0.02 1.54 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.37 18.19 6.61 -92.71 -0.61 17.58 16 35 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 36 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.07 2.19 7.22 -2.39 -0.02 2.17 16 38 H 0.10 2.35 5.93 -2.38 -0.01 2.33 16 39 H 0.06 2.16 7.62 -2.39 -0.02 2.14 16 40 H 0.12 2.48 7.32 -2.38 -0.02 2.46 16 41 H 0.12 2.42 7.86 -2.39 -0.02 2.40 16 42 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 44 H 0.17 1.90 6.47 -2.91 -0.02 1.88 16 45 H 0.08 0.61 7.71 -2.39 -0.02 0.59 16 46 H 0.06 0.69 7.71 -2.38 -0.02 0.67 16 47 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.05 1.98 7.02 -2.39 -0.02 1.96 16 49 H 0.07 2.64 7.00 -2.39 -0.02 2.62 16 50 H 0.07 2.30 6.64 -2.39 -0.02 2.28 16 51 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -69.66 398.21 3.73 -65.93 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: 0.33 Total: 36.15 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 7.40 Total: 7.83 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -5.09 Total: -125.42 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.93 Total: -30.82 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -69.66 3.73 -65.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327454581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.854 kcal (2) G-P(sol) polarization free energy of solvation -69.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds