Wall clock time and date at job start Wed Apr 1 2020 04:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46873 * 2 1 4 4 C 1.38675 * 120.41772 * 89.99625 * 3 2 1 5 5 C 1.38630 * 118.41860 * 179.74920 * 4 3 2 6 6 C 1.38224 * 119.16347 * 0.25530 * 5 4 3 7 7 C 1.50700 * 119.62022 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47092 * 124.99573 * 7 6 5 9 9 O 1.21279 * 119.99800 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99704 * 179.97438 * 8 7 6 11 11 C 1.46920 * 120.63202 * 359.72777 * 10 8 7 12 12 C 1.53620 * 108.54327 * 126.36635 * 11 10 8 13 13 C 1.53043 * 109.24300 * 54.85546 * 12 11 10 14 14 C 1.53046 * 109.53760 * 298.51018 * 13 12 11 15 15 C 1.52996 * 109.49419 * 181.31615 * 14 13 12 16 16 O 1.42901 * 109.46750 * 180.16265 * 15 14 13 17 17 N 1.46502 * 109.52366 * 301.39898 * 14 13 12 18 18 C 1.36936 * 119.99592 * 179.85458 * 17 14 13 19 19 H 1.07994 * 120.00613 * 359.97438 * 18 17 14 20 20 C 1.38813 * 119.99666 * 179.97438 * 18 17 14 21 21 N 1.31618 * 119.99927 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99941 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47104 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47041 * 120.00431 * 22 20 18 25 25 H 1.48504 * 109.46896 * 239.99944 * 22 20 18 26 26 C 1.46931 * 120.62684 * 180.02562 * 10 8 7 27 27 N 1.31856 * 120.76155 * 359.97390 * 6 5 4 28 28 C 1.31888 * 121.72786 * 0.02789 * 27 6 5 29 29 H 1.08997 * 109.47180 * 300.00167 * 1 2 3 30 30 H 1.09003 * 109.46810 * 60.00325 * 1 2 3 31 31 H 1.09006 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47173 * 240.00299 * 2 1 3 33 33 H 1.08994 * 109.47066 * 119.99693 * 2 1 3 34 34 H 1.08002 * 120.79244 * 0.03059 * 4 3 2 35 35 H 1.07998 * 120.41760 * 180.27499 * 5 4 3 36 36 H 1.08998 * 109.47094 * 244.99844 * 7 6 5 37 37 H 1.08998 * 109.46845 * 5.00521 * 7 6 5 38 38 H 1.09002 * 109.58369 * 246.19460 * 11 10 8 39 39 H 1.08998 * 109.59093 * 6.62268 * 11 10 8 40 40 H 1.09002 * 109.63521 * 294.86578 * 12 11 10 41 41 H 1.09001 * 109.43560 * 174.72436 * 12 11 10 42 42 H 1.09009 * 109.46117 * 178.49196 * 13 12 11 43 43 H 1.08998 * 109.45004 * 58.52554 * 13 12 11 44 44 H 1.09000 * 109.47312 * 300.15953 * 15 14 13 45 45 H 1.08997 * 109.47651 * 60.16881 * 15 14 13 46 46 H 0.96699 * 114.00170 * 179.97438 * 16 15 14 47 47 H 0.97001 * 119.99991 * 359.85107 * 17 14 13 48 48 H 0.97002 * 119.99889 * 180.02562 * 21 20 18 49 49 H 1.08995 * 109.58850 * 353.38200 * 26 10 8 50 50 H 1.09004 * 109.58521 * 113.65768 * 26 10 8 51 51 H 1.07999 * 119.61439 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2662 2.0828 1.1959 5 6 2.7330 3.3873 1.1475 6 6 2.9432 3.9823 -0.0822 7 6 3.4499 5.4001 -0.1468 8 6 4.7015 5.4486 -0.9848 9 8 5.1387 4.4320 -1.4810 10 7 5.3344 6.6218 -1.1834 11 6 4.8130 7.8628 -0.5946 12 6 5.9375 8.5320 0.2100 13 6 7.1562 8.7295 -0.6946 14 6 7.6577 7.3682 -1.1822 15 6 8.8955 7.5646 -2.0597 16 8 9.3610 6.2935 -2.5178 17 7 8.0027 6.5321 -0.0298 18 6 8.4744 5.2611 -0.2229 19 1 8.5917 4.8750 -1.2246 20 6 8.8019 4.4690 0.8690 21 7 8.6586 4.9394 2.0898 22 14 9.4447 2.7350 0.6056 23 1 9.5112 2.4474 -0.8496 24 1 10.8016 2.6149 1.1970 25 1 8.5317 1.7639 1.2604 26 6 6.5554 6.6851 -1.9984 27 7 2.7054 3.3238 -1.1995 28 6 2.2610 2.0820 -1.1916 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0933 1.5923 2.1424 35 1 2.9303 3.9316 2.0592 36 1 2.6880 6.0382 -0.5945 37 1 3.6731 5.7523 0.8602 38 1 4.4797 8.5317 -1.3881 39 1 3.9774 7.6310 0.0657 40 1 6.2102 7.8991 1.0546 41 1 5.5952 9.5001 0.5757 42 1 7.9471 9.2285 -0.1345 43 1 6.8764 9.3418 -1.5518 44 1 8.6385 8.1876 -2.9163 45 1 9.6793 8.0507 -1.4789 46 1 10.1452 6.3417 -3.0815 47 1 7.8972 6.8788 0.8700 48 1 8.8878 4.3861 2.8528 49 1 6.8698 5.6760 -2.2645 50 1 6.3603 7.2580 -2.9050 51 1 2.0781 1.5746 -2.1273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484847323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:19 Heat of formation + Delta-G solvation = -33.431186 kcal Electronic energy + Delta-G solvation = -32223.270528 eV Core-core repulsion = 28122.974063 eV Total energy + Delta-G solvation = -4100.296465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.35070 -39.50748 -37.59507 -35.66244 -34.86559 -33.75031 -32.29187 -32.01040 -31.30449 -30.86069 -28.62702 -27.76480 -25.32226 -24.95430 -23.70884 -23.44057 -23.10977 -21.62066 -21.07778 -19.22866 -18.15959 -17.25639 -16.83218 -16.31417 -16.22721 -16.14460 -15.45725 -15.09805 -14.76645 -14.62238 -14.10678 -14.04678 -13.96252 -13.76304 -13.50309 -13.32349 -13.12486 -13.00561 -12.80939 -12.57356 -12.43833 -12.28068 -12.03807 -11.94842 -11.75098 -11.39938 -11.36543 -11.11212 -11.03278 -10.75379 -10.69257 -10.56447 -10.38310 -10.07926 -9.64771 -9.57256 -9.49759 -9.20843 -9.02929 -8.93304 -8.75169 -8.55564 -7.89718 -6.75222 -5.52881 -2.77655 1.25977 1.51072 3.38007 3.59829 3.61029 3.66990 3.72738 4.01983 4.41330 4.74136 4.77284 4.80275 4.84778 4.92330 5.02195 5.14251 5.16106 5.21612 5.26811 5.32774 5.36759 5.49750 5.52009 5.54310 5.62622 5.69288 5.70634 5.72897 5.76281 5.84362 5.89881 5.92726 5.94221 5.96876 6.03978 6.08366 6.16429 6.23921 6.28644 6.32166 6.39897 6.44029 6.69824 6.83857 6.87627 7.00747 7.25192 8.10574 8.21983 8.27422 8.41995 8.65667 8.98131 9.79547 10.27193 10.62942 11.70999 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.003820 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.215104 B = 7327.703822 C = 8719.883790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.076 4.076 5 C -0.159 4.159 6 C 0.146 3.854 7 C -0.090 4.090 8 C 0.527 3.473 9 O -0.512 6.512 10 N -0.599 5.599 11 C 0.111 3.889 12 C -0.132 4.132 13 C -0.115 4.115 14 C 0.188 3.812 15 C 0.076 3.924 16 O -0.540 6.540 17 N -0.702 5.702 18 C -0.192 4.192 19 H 0.091 0.909 20 C -0.024 4.024 21 N -0.948 5.948 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.298 1.298 25 H -0.298 1.298 26 C 0.115 3.885 27 N -0.453 5.453 28 C 0.104 3.896 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.023 0.977 45 H 0.039 0.961 46 H 0.353 0.647 47 H 0.381 0.619 48 H 0.247 0.753 49 H 0.102 0.898 50 H 0.042 0.958 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.055 4.016 -4.129 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.146 4.146 4 C -0.101 4.101 5 C -0.179 4.179 6 C 0.008 3.992 7 C -0.131 4.131 8 C 0.313 3.687 9 O -0.385 6.385 10 N -0.333 5.333 11 C -0.013 4.013 12 C -0.170 4.170 13 C -0.153 4.153 14 C 0.094 3.906 15 C -0.005 4.005 16 O -0.342 6.342 17 N -0.343 5.343 18 C -0.324 4.324 19 H 0.109 0.891 20 C -0.217 4.217 21 N -0.599 5.599 22 Si 0.733 3.267 23 H -0.206 1.206 24 H -0.226 1.226 25 H -0.226 1.226 26 C -0.010 4.010 27 N -0.160 5.160 28 C -0.054 4.054 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.041 0.959 45 H 0.057 0.943 46 H 0.198 0.802 47 H 0.216 0.784 48 H 0.057 0.943 49 H 0.120 0.880 50 H 0.060 0.940 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.130 3.486 -4.912 16.285 hybrid contribution 0.889 -0.941 0.925 1.591 sum -14.242 2.545 -3.986 15.006 Atomic orbital electron populations 1.21752 0.94782 1.01605 1.02137 1.20440 0.95956 0.92163 1.03128 1.20854 1.01775 0.97512 0.94433 1.21365 0.96618 0.94170 0.97994 1.21930 1.01043 0.96106 0.98845 1.20567 0.94715 0.95299 0.88605 1.20626 0.96948 0.93223 1.02276 1.19867 0.84525 0.83238 0.81087 1.90722 1.65818 1.32910 1.49101 1.47721 1.26884 1.06568 1.52092 1.21715 0.96400 0.86485 0.96682 1.21942 0.95283 1.00379 0.99416 1.21614 0.97806 0.96663 0.99214 1.19968 0.90993 0.90246 0.89351 1.22757 0.97201 0.85218 0.95360 1.86891 1.48272 1.28904 1.70163 1.42413 1.76680 1.13157 1.02026 1.19577 1.30748 0.88787 0.93254 0.89090 1.24613 1.03666 0.98051 0.95352 1.69664 1.57047 1.36377 0.96821 0.86166 0.77584 0.85775 0.77192 1.20564 1.22634 1.22634 1.22039 0.83858 1.04010 0.91087 1.67424 1.09115 1.08701 1.30791 1.22551 0.95020 0.90652 0.97171 0.92682 0.92540 0.92410 0.90758 0.90972 0.85172 0.84815 0.87920 0.87652 0.92147 0.90540 0.90064 0.91584 0.91616 0.92050 0.95888 0.94291 0.80221 0.78426 0.94334 0.87970 0.94008 0.83326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.78 6.09 -27.88 -0.17 -0.95 16 3 C -0.14 -1.90 5.15 -104.48 -0.54 -2.44 16 4 C -0.08 -1.02 9.86 -39.27 -0.39 -1.40 16 5 C -0.16 -2.38 9.71 -39.44 -0.38 -2.77 16 6 C 0.15 2.48 5.76 -82.59 -0.48 2.01 16 7 C -0.09 -1.40 4.45 -29.03 -0.13 -1.53 16 8 C 0.53 10.65 7.63 -10.98 -0.08 10.56 16 9 O -0.51 -12.90 14.75 5.56 0.08 -12.82 16 10 N -0.60 -10.81 2.88 -172.48 -0.50 -11.31 16 11 C 0.11 1.47 6.37 -3.49 -0.02 1.45 16 12 C -0.13 -1.83 5.93 -26.39 -0.16 -1.98 16 13 C -0.11 -1.71 4.76 -26.69 -0.13 -1.84 16 14 C 0.19 3.59 0.68 -131.68 -0.09 3.50 16 15 C 0.08 1.34 6.08 37.16 0.23 1.57 16 16 O -0.54 -10.66 10.11 -35.23 -0.36 -11.01 16 17 N -0.70 -17.14 4.75 -47.10 -0.22 -17.36 16 18 C -0.19 -5.48 8.21 -15.06 -0.12 -5.61 16 19 H 0.09 2.71 5.28 -52.49 -0.28 2.44 16 20 C -0.02 -0.72 5.50 -17.43 -0.10 -0.81 16 21 N -0.95 -29.43 13.06 55.49 0.72 -28.70 16 22 Si 0.90 24.87 29.55 -169.99 -5.02 19.85 16 23 H -0.28 -7.73 7.11 56.52 0.40 -7.33 16 24 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 25 H -0.30 -8.44 7.11 56.52 0.40 -8.04 16 26 C 0.11 2.25 4.85 -3.69 -0.02 2.23 16 27 N -0.45 -8.14 9.22 -9.47 -0.09 -8.22 16 28 C 0.10 1.58 10.86 -17.55 -0.19 1.39 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.13 1.72 7.95 -52.49 -0.42 1.30 16 36 H 0.10 1.28 7.93 -51.93 -0.41 0.87 16 37 H 0.11 1.45 7.43 -51.93 -0.39 1.06 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.85 5.93 -51.93 -0.31 0.54 16 40 H 0.08 1.39 6.75 -51.93 -0.35 1.04 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.35 5.17 9.12 45.56 0.42 5.58 16 47 H 0.38 9.89 6.43 -40.82 -0.26 9.62 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.10 2.50 5.70 -51.93 -0.30 2.21 16 50 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -38.20 402.00 -9.06 -47.26 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -7.34 Total: 13.70 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -2.40 Total: 2.56 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.08 Total: -65.60 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.27 Total: -23.83 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.02 Total: 19.85 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.20 -9.06 -47.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484847323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.833 kcal (2) G-P(sol) polarization free energy of solvation -38.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds