Wall clock time and date at job start Wed Apr 1 2020 04:40:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50699 * 109.46873 * 2 1
4 4 C 1.38675 * 120.41772 * 89.99625 * 3 2 1
5 5 C 1.38630 * 118.41860 * 179.74920 * 4 3 2
6 6 C 1.38224 * 119.16347 * 0.25530 * 5 4 3
7 7 C 1.50700 * 119.62022 * 179.97438 * 6 5 4
8 8 C 1.50703 * 109.47092 * 124.99573 * 7 6 5
9 9 O 1.21279 * 119.99800 * 0.02562 * 8 7 6
10 10 N 1.34777 * 119.99704 * 179.97438 * 8 7 6
11 11 C 1.46920 * 120.63202 * 359.72777 * 10 8 7
12 12 C 1.53620 * 108.54327 * 126.36635 * 11 10 8
13 13 C 1.53043 * 109.24300 * 54.85546 * 12 11 10
14 14 C 1.53046 * 109.53760 * 298.51018 * 13 12 11
15 15 C 1.52996 * 109.49419 * 181.31615 * 14 13 12
16 16 O 1.42901 * 109.46750 * 180.16265 * 15 14 13
17 17 N 1.46502 * 109.52366 * 301.39898 * 14 13 12
18 18 C 1.36936 * 119.99592 * 179.85458 * 17 14 13
19 19 H 1.07994 * 120.00613 * 359.97438 * 18 17 14
20 20 C 1.38813 * 119.99666 * 179.97438 * 18 17 14
21 21 N 1.31618 * 119.99927 * 0.02562 * 20 18 17
22 22 Si 1.86801 * 119.99941 * 179.97438 * 20 18 17
23 23 H 1.48490 * 109.47104 * 359.97438 * 22 20 18
24 24 H 1.48502 * 109.47041 * 120.00431 * 22 20 18
25 25 H 1.48504 * 109.46896 * 239.99944 * 22 20 18
26 26 C 1.46931 * 120.62684 * 180.02562 * 10 8 7
27 27 N 1.31856 * 120.76155 * 359.97390 * 6 5 4
28 28 C 1.31888 * 121.72786 * 0.02789 * 27 6 5
29 29 H 1.08997 * 109.47180 * 300.00167 * 1 2 3
30 30 H 1.09003 * 109.46810 * 60.00325 * 1 2 3
31 31 H 1.09006 * 109.46973 * 179.97438 * 1 2 3
32 32 H 1.09002 * 109.47173 * 240.00299 * 2 1 3
33 33 H 1.08994 * 109.47066 * 119.99693 * 2 1 3
34 34 H 1.08002 * 120.79244 * 0.03059 * 4 3 2
35 35 H 1.07998 * 120.41760 * 180.27499 * 5 4 3
36 36 H 1.08998 * 109.47094 * 244.99844 * 7 6 5
37 37 H 1.08998 * 109.46845 * 5.00521 * 7 6 5
38 38 H 1.09002 * 109.58369 * 246.19460 * 11 10 8
39 39 H 1.08998 * 109.59093 * 6.62268 * 11 10 8
40 40 H 1.09002 * 109.63521 * 294.86578 * 12 11 10
41 41 H 1.09001 * 109.43560 * 174.72436 * 12 11 10
42 42 H 1.09009 * 109.46117 * 178.49196 * 13 12 11
43 43 H 1.08998 * 109.45004 * 58.52554 * 13 12 11
44 44 H 1.09000 * 109.47312 * 300.15953 * 15 14 13
45 45 H 1.08997 * 109.47651 * 60.16881 * 15 14 13
46 46 H 0.96699 * 114.00170 * 179.97438 * 16 15 14
47 47 H 0.97001 * 119.99991 * 359.85107 * 17 14 13
48 48 H 0.97002 * 119.99889 * 180.02562 * 21 20 18
49 49 H 1.08995 * 109.58850 * 353.38200 * 26 10 8
50 50 H 1.09004 * 109.58521 * 113.65768 * 26 10 8
51 51 H 1.07999 * 119.61439 * 180.02562 * 28 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2662 2.0828 1.1959
5 6 2.7330 3.3873 1.1475
6 6 2.9432 3.9823 -0.0822
7 6 3.4499 5.4001 -0.1468
8 6 4.7015 5.4486 -0.9848
9 8 5.1387 4.4320 -1.4810
10 7 5.3344 6.6218 -1.1834
11 6 4.8130 7.8628 -0.5946
12 6 5.9375 8.5320 0.2100
13 6 7.1562 8.7295 -0.6946
14 6 7.6577 7.3682 -1.1822
15 6 8.8955 7.5646 -2.0597
16 8 9.3610 6.2935 -2.5178
17 7 8.0027 6.5321 -0.0298
18 6 8.4744 5.2611 -0.2229
19 1 8.5917 4.8750 -1.2246
20 6 8.8019 4.4690 0.8690
21 7 8.6586 4.9394 2.0898
22 14 9.4447 2.7350 0.6056
23 1 9.5112 2.4474 -0.8496
24 1 10.8016 2.6149 1.1970
25 1 8.5317 1.7639 1.2604
26 6 6.5554 6.6851 -1.9984
27 7 2.7054 3.3238 -1.1995
28 6 2.2610 2.0820 -1.1916
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8934 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 2.0933 1.5923 2.1424
35 1 2.9303 3.9316 2.0592
36 1 2.6880 6.0382 -0.5945
37 1 3.6731 5.7523 0.8602
38 1 4.4797 8.5317 -1.3881
39 1 3.9774 7.6310 0.0657
40 1 6.2102 7.8991 1.0546
41 1 5.5952 9.5001 0.5757
42 1 7.9471 9.2285 -0.1345
43 1 6.8764 9.3418 -1.5518
44 1 8.6385 8.1876 -2.9163
45 1 9.6793 8.0507 -1.4789
46 1 10.1452 6.3417 -3.0815
47 1 7.8972 6.8788 0.8700
48 1 8.8878 4.3861 2.8528
49 1 6.8698 5.6760 -2.2645
50 1 6.3603 7.2580 -2.9050
51 1 2.0781 1.5746 -2.1273
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001484847323.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:18
Heat of formation + Delta-G solvation = -61.950188 kcal
Electronic energy + Delta-G solvation = -32224.507205 eV
Core-core repulsion = 28122.974063 eV
Total energy + Delta-G solvation = -4101.533142 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.57242 -40.84196 -39.11647 -37.10239 -35.85569 -35.54391 -33.97499 -33.23359
-32.50604 -32.20009 -30.43439 -28.93386 -26.64656 -26.27234 -25.52835 -24.75504
-24.16671 -22.88449 -22.09513 -20.68537 -19.65480 -19.13414 -18.13318 -17.81481
-17.56721 -17.42423 -16.82394 -16.30870 -16.12612 -16.11537 -15.79409 -15.59718
-15.17158 -14.95615 -14.72296 -14.63089 -14.45904 -14.32815 -13.98257 -13.81969
-13.65425 -13.56953 -13.38915 -13.27646 -12.99020 -12.93191 -12.76402 -12.67309
-12.52787 -12.18616 -12.06452 -11.89868 -11.83613 -11.71161 -11.39148 -11.26477
-10.90633 -10.69810 -10.59426 -10.56898 -10.25839 -9.68989 -9.40354 -8.77639
-7.82375 -5.01727 0.14071 0.40552 1.34692 1.38583 1.47876 1.91275
2.27364 2.61835 2.86838 3.30239 3.40226 3.68627 3.72630 3.82365
3.84616 3.89949 4.01854 4.04710 4.07004 4.18424 4.25356 4.30698
4.39057 4.43328 4.49063 4.52600 4.55375 4.60443 4.63363 4.71346
4.76805 4.82544 4.86533 4.92863 4.97911 5.04041 5.06453 5.07986
5.09357 5.20105 5.25439 5.35667 5.40734 5.48869 5.57485 5.80165
5.84765 5.92094 6.44279 6.70504 7.12597 7.15324 7.51223 7.52906
8.22169 8.45681 9.42163
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010647 B = 0.003820 C = 0.003210
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2629.215104 B = 7327.703822 C = 8719.883790
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.078 4.078
3 C -0.139 4.139
4 C -0.083 4.083
5 C -0.170 4.170
6 C 0.115 3.885
7 C -0.080 4.080
8 C 0.511 3.489
9 O -0.578 6.578
10 N -0.600 5.600
11 C 0.103 3.897
12 C -0.128 4.128
13 C -0.110 4.110
14 C 0.175 3.825
15 C 0.074 3.926
16 O -0.575 6.575
17 N -0.707 5.707
18 C -0.161 4.161
19 H 0.076 0.924
20 C -0.085 4.085
21 N -0.974 5.974
22 Si 0.939 3.061
23 H -0.285 1.285
24 H -0.292 1.292
25 H -0.311 1.311
26 C 0.120 3.880
27 N -0.488 5.488
28 C 0.081 3.919
29 H 0.055 0.945
30 H 0.052 0.948
31 H 0.075 0.925
32 H 0.079 0.921
33 H 0.081 0.919
34 H 0.159 0.841
35 H 0.151 0.849
36 H 0.135 0.865
37 H 0.122 0.878
38 H 0.097 0.903
39 H 0.100 0.900
40 H 0.041 0.959
41 H 0.108 0.892
42 H 0.066 0.934
43 H 0.100 0.900
44 H 0.065 0.935
45 H 0.036 0.964
46 H 0.374 0.626
47 H 0.372 0.628
48 H 0.240 0.760
49 H 0.045 0.955
50 H 0.071 0.929
51 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.838 6.069 -4.329 18.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.115 4.115
3 C -0.141 4.141
4 C -0.108 4.108
5 C -0.190 4.190
6 C -0.023 4.023
7 C -0.120 4.120
8 C 0.299 3.701
9 O -0.456 6.456
10 N -0.332 5.332
11 C -0.018 4.018
12 C -0.166 4.166
13 C -0.147 4.147
14 C 0.084 3.916
15 C -0.006 4.006
16 O -0.381 6.381
17 N -0.346 5.346
18 C -0.294 4.294
19 H 0.093 0.907
20 C -0.275 4.275
21 N -0.629 5.629
22 Si 0.773 3.227
23 H -0.211 1.211
24 H -0.220 1.220
25 H -0.240 1.240
26 C -0.005 4.005
27 N -0.196 5.196
28 C -0.076 4.076
29 H 0.074 0.926
30 H 0.071 0.929
31 H 0.094 0.906
32 H 0.097 0.903
33 H 0.100 0.900
34 H 0.176 0.824
35 H 0.168 0.832
36 H 0.153 0.847
37 H 0.140 0.860
38 H 0.115 0.885
39 H 0.118 0.882
40 H 0.060 0.940
41 H 0.126 0.874
42 H 0.085 0.915
43 H 0.118 0.882
44 H 0.083 0.917
45 H 0.055 0.945
46 H 0.222 0.778
47 H 0.206 0.794
48 H 0.049 0.951
49 H 0.063 0.937
50 H 0.089 0.911
51 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges -16.914 5.616 -5.155 18.553
hybrid contribution 1.418 -1.521 0.830 2.239
sum -15.496 4.094 -4.325 16.601
Atomic orbital electron populations
1.21713 0.93222 1.02752 1.02047 1.20525 0.97182 0.89976 1.03864
1.21217 1.00269 0.98890 0.93701 1.21781 0.95885 0.93839 0.99332
1.22221 1.00926 0.96997 0.98844 1.20879 0.96020 0.96204 0.89189
1.20649 0.95379 0.93651 1.02329 1.20757 0.85620 0.82900 0.80776
1.90683 1.67851 1.35273 1.51844 1.47926 1.25990 1.07858 1.51439
1.22136 0.96801 0.84770 0.98096 1.21923 0.95048 1.01733 0.97901
1.21637 0.98245 0.94029 1.00830 1.20438 0.91519 0.91777 0.87887
1.22754 0.96274 0.84908 0.96637 1.86812 1.49679 1.30588 1.70989
1.42502 1.76339 1.12387 1.03412 1.19603 1.27518 0.90165 0.92078
0.90677 1.25067 1.06338 1.00364 0.95744 1.69747 1.59543 1.36777
0.96863 0.85507 0.77204 0.83534 0.76412 1.21068 1.22014 1.23972
1.21808 0.84882 1.01120 0.92663 1.67363 1.10242 1.10138 1.31881
1.22927 0.95513 0.90454 0.98734 0.92555 0.92875 0.90628 0.90279
0.89992 0.82351 0.83174 0.84699 0.85979 0.88503 0.88176 0.93988
0.87356 0.91499 0.88194 0.91669 0.94550 0.77811 0.79447 0.95133
0.93654 0.91081 0.82036
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.03 9.89 71.98 0.71 -1.32 16
2 C -0.08 -1.43 6.09 29.85 0.18 -1.24 16
3 C -0.14 -3.61 5.15 -19.77 -0.10 -3.72 16
4 C -0.08 -2.16 9.86 22.47 0.22 -1.93 16
5 C -0.17 -5.05 9.71 22.36 0.22 -4.83 16
6 C 0.11 3.94 5.76 42.55 0.25 4.19 16
7 C -0.08 -2.44 4.45 29.10 0.13 -2.31 16
8 C 0.51 20.91 7.63 87.66 0.67 21.58 16
9 O -0.58 -30.62 14.75 -3.03 -0.04 -30.67 16
10 N -0.60 -20.96 2.88 -818.01 -2.36 -23.32 16
11 C 0.10 2.36 6.37 86.51 0.55 2.91 16
12 C -0.13 -3.09 5.93 30.82 0.18 -2.91 16
13 C -0.11 -2.87 4.76 30.62 0.15 -2.72 16
14 C 0.18 6.45 0.68 3.69 0.00 6.45 16
15 C 0.07 2.50 6.08 71.98 0.44 2.94 16
16 O -0.57 -22.64 10.11 -148.98 -1.51 -24.14 16
17 N -0.71 -34.83 4.75 -302.94 -1.44 -36.27 16
18 C -0.16 -9.42 8.21 84.03 0.69 -8.73 16
19 H 0.08 4.66 5.28 -2.91 -0.02 4.64 16
20 C -0.09 -5.31 5.50 84.86 0.47 -4.84 16
21 N -0.97 -62.20 13.06 21.65 0.28 -61.92 16
22 Si 0.94 52.92 29.55 68.60 2.03 54.95 16
23 H -0.29 -16.02 7.11 99.48 0.71 -15.31 16
24 H -0.29 -15.97 7.11 99.48 0.71 -15.26 16
25 H -0.31 -17.94 7.11 99.48 0.71 -17.23 16
26 C 0.12 4.64 4.85 86.37 0.42 5.06 16
27 N -0.49 -18.07 9.22 -183.89 -1.70 -19.77 16
28 C 0.08 2.52 10.86 84.67 0.92 3.44 16
29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16
31 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16
32 H 0.08 1.38 8.10 -2.39 -0.02 1.36 16
33 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16
34 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16
35 H 0.15 3.75 7.95 -2.91 -0.02 3.73 16
36 H 0.14 3.08 7.93 -2.39 -0.02 3.06 16
37 H 0.12 3.21 7.43 -2.39 -0.02 3.19 16
38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16
39 H 0.10 1.83 5.93 -2.39 -0.01 1.81 16
40 H 0.04 1.37 6.75 -2.39 -0.02 1.36 16
41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16
42 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16
43 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16
44 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
45 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16
46 H 0.37 10.77 9.12 -74.06 -0.68 10.09 16
47 H 0.37 19.59 6.43 -92.71 -0.60 18.99 16
48 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16
49 H 0.04 2.29 5.70 -2.39 -0.01 2.28 16
50 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16
51 H 0.16 4.25 8.06 -2.91 -0.02 4.22 16
Total: -1.00 -89.97 402.00 1.04 -88.93
By element:
Atomic # 1 Polarization: 40.51 SS G_CDS: -0.32 Total: 40.19 kcal
Atomic # 6 Polarization: 5.93 SS G_CDS: 6.09 Total: 12.02 kcal
Atomic # 7 Polarization: -136.07 SS G_CDS: -5.21 Total: -141.28 kcal
Atomic # 8 Polarization: -53.26 SS G_CDS: -1.55 Total: -54.81 kcal
Atomic # 14 Polarization: 52.92 SS G_CDS: 2.03 Total: 54.95 kcal
Total: -89.97 1.04 -88.93 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484847323.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.984 kcal
(2) G-P(sol) polarization free energy of solvation -89.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.985 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.934 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.950 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds