Wall clock time and date at job start Wed Apr 1 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46873 * 2 1 4 4 C 1.38675 * 120.41772 * 89.99625 * 3 2 1 5 5 C 1.38630 * 118.41860 * 179.74920 * 4 3 2 6 6 C 1.38224 * 119.16347 * 0.25530 * 5 4 3 7 7 C 1.50700 * 119.62022 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47092 * 124.99573 * 7 6 5 9 9 O 1.21279 * 119.99800 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99704 * 179.97438 * 8 7 6 11 11 C 1.46920 * 120.63202 * 359.72777 * 10 8 7 12 12 C 1.53620 * 108.54327 * 126.36635 * 11 10 8 13 13 C 1.53043 * 109.24300 * 54.85546 * 12 11 10 14 14 C 1.53046 * 109.53760 * 298.51018 * 13 12 11 15 15 C 1.52996 * 109.49419 * 181.31615 * 14 13 12 16 16 O 1.42901 * 109.46750 * 180.16265 * 15 14 13 17 17 N 1.46502 * 109.52366 * 301.39898 * 14 13 12 18 18 C 1.36936 * 119.99592 * 179.85458 * 17 14 13 19 19 H 1.07994 * 120.00613 * 359.97438 * 18 17 14 20 20 C 1.38813 * 119.99666 * 179.97438 * 18 17 14 21 21 N 1.31618 * 119.99927 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99941 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47104 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47041 * 120.00431 * 22 20 18 25 25 H 1.48504 * 109.46896 * 239.99944 * 22 20 18 26 26 C 1.46931 * 120.62684 * 180.02562 * 10 8 7 27 27 N 1.31856 * 120.76155 * 359.97390 * 6 5 4 28 28 C 1.31888 * 121.72786 * 0.02789 * 27 6 5 29 29 H 1.08997 * 109.47180 * 300.00167 * 1 2 3 30 30 H 1.09003 * 109.46810 * 60.00325 * 1 2 3 31 31 H 1.09006 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47173 * 240.00299 * 2 1 3 33 33 H 1.08994 * 109.47066 * 119.99693 * 2 1 3 34 34 H 1.08002 * 120.79244 * 0.03059 * 4 3 2 35 35 H 1.07998 * 120.41760 * 180.27499 * 5 4 3 36 36 H 1.08998 * 109.47094 * 244.99844 * 7 6 5 37 37 H 1.08998 * 109.46845 * 5.00521 * 7 6 5 38 38 H 1.09002 * 109.58369 * 246.19460 * 11 10 8 39 39 H 1.08998 * 109.59093 * 6.62268 * 11 10 8 40 40 H 1.09002 * 109.63521 * 294.86578 * 12 11 10 41 41 H 1.09001 * 109.43560 * 174.72436 * 12 11 10 42 42 H 1.09009 * 109.46117 * 178.49196 * 13 12 11 43 43 H 1.08998 * 109.45004 * 58.52554 * 13 12 11 44 44 H 1.09000 * 109.47312 * 300.15953 * 15 14 13 45 45 H 1.08997 * 109.47651 * 60.16881 * 15 14 13 46 46 H 0.96699 * 114.00170 * 179.97438 * 16 15 14 47 47 H 0.97001 * 119.99991 * 359.85107 * 17 14 13 48 48 H 0.97002 * 119.99889 * 180.02562 * 21 20 18 49 49 H 1.08995 * 109.58850 * 353.38200 * 26 10 8 50 50 H 1.09004 * 109.58521 * 113.65768 * 26 10 8 51 51 H 1.07999 * 119.61439 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2662 2.0828 1.1959 5 6 2.7330 3.3873 1.1475 6 6 2.9432 3.9823 -0.0822 7 6 3.4499 5.4001 -0.1468 8 6 4.7015 5.4486 -0.9848 9 8 5.1387 4.4320 -1.4810 10 7 5.3344 6.6218 -1.1834 11 6 4.8130 7.8628 -0.5946 12 6 5.9375 8.5320 0.2100 13 6 7.1562 8.7295 -0.6946 14 6 7.6577 7.3682 -1.1822 15 6 8.8955 7.5646 -2.0597 16 8 9.3610 6.2935 -2.5178 17 7 8.0027 6.5321 -0.0298 18 6 8.4744 5.2611 -0.2229 19 1 8.5917 4.8750 -1.2246 20 6 8.8019 4.4690 0.8690 21 7 8.6586 4.9394 2.0898 22 14 9.4447 2.7350 0.6056 23 1 9.5112 2.4474 -0.8496 24 1 10.8016 2.6149 1.1970 25 1 8.5317 1.7639 1.2604 26 6 6.5554 6.6851 -1.9984 27 7 2.7054 3.3238 -1.1995 28 6 2.2610 2.0820 -1.1916 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0933 1.5923 2.1424 35 1 2.9303 3.9316 2.0592 36 1 2.6880 6.0382 -0.5945 37 1 3.6731 5.7523 0.8602 38 1 4.4797 8.5317 -1.3881 39 1 3.9774 7.6310 0.0657 40 1 6.2102 7.8991 1.0546 41 1 5.5952 9.5001 0.5757 42 1 7.9471 9.2285 -0.1345 43 1 6.8764 9.3418 -1.5518 44 1 8.6385 8.1876 -2.9163 45 1 9.6793 8.0507 -1.4789 46 1 10.1452 6.3417 -3.0815 47 1 7.8972 6.8788 0.8700 48 1 8.8878 4.3861 2.8528 49 1 6.8698 5.6760 -2.2645 50 1 6.3603 7.2580 -2.9050 51 1 2.0781 1.5746 -2.1273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484847323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:18 Heat of formation + Delta-G solvation = -61.950188 kcal Electronic energy + Delta-G solvation = -32224.507205 eV Core-core repulsion = 28122.974063 eV Total energy + Delta-G solvation = -4101.533142 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57242 -40.84196 -39.11647 -37.10239 -35.85569 -35.54391 -33.97499 -33.23359 -32.50604 -32.20009 -30.43439 -28.93386 -26.64656 -26.27234 -25.52835 -24.75504 -24.16671 -22.88449 -22.09513 -20.68537 -19.65480 -19.13414 -18.13318 -17.81481 -17.56721 -17.42423 -16.82394 -16.30870 -16.12612 -16.11537 -15.79409 -15.59718 -15.17158 -14.95615 -14.72296 -14.63089 -14.45904 -14.32815 -13.98257 -13.81969 -13.65425 -13.56953 -13.38915 -13.27646 -12.99020 -12.93191 -12.76402 -12.67309 -12.52787 -12.18616 -12.06452 -11.89868 -11.83613 -11.71161 -11.39148 -11.26477 -10.90633 -10.69810 -10.59426 -10.56898 -10.25839 -9.68989 -9.40354 -8.77639 -7.82375 -5.01727 0.14071 0.40552 1.34692 1.38583 1.47876 1.91275 2.27364 2.61835 2.86838 3.30239 3.40226 3.68627 3.72630 3.82365 3.84616 3.89949 4.01854 4.04710 4.07004 4.18424 4.25356 4.30698 4.39057 4.43328 4.49063 4.52600 4.55375 4.60443 4.63363 4.71346 4.76805 4.82544 4.86533 4.92863 4.97911 5.04041 5.06453 5.07986 5.09357 5.20105 5.25439 5.35667 5.40734 5.48869 5.57485 5.80165 5.84765 5.92094 6.44279 6.70504 7.12597 7.15324 7.51223 7.52906 8.22169 8.45681 9.42163 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.003820 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.215104 B = 7327.703822 C = 8719.883790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.083 4.083 5 C -0.170 4.170 6 C 0.115 3.885 7 C -0.080 4.080 8 C 0.511 3.489 9 O -0.578 6.578 10 N -0.600 5.600 11 C 0.103 3.897 12 C -0.128 4.128 13 C -0.110 4.110 14 C 0.175 3.825 15 C 0.074 3.926 16 O -0.575 6.575 17 N -0.707 5.707 18 C -0.161 4.161 19 H 0.076 0.924 20 C -0.085 4.085 21 N -0.974 5.974 22 Si 0.939 3.061 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.311 1.311 26 C 0.120 3.880 27 N -0.488 5.488 28 C 0.081 3.919 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.374 0.626 47 H 0.372 0.628 48 H 0.240 0.760 49 H 0.045 0.955 50 H 0.071 0.929 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.838 6.069 -4.329 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.141 4.141 4 C -0.108 4.108 5 C -0.190 4.190 6 C -0.023 4.023 7 C -0.120 4.120 8 C 0.299 3.701 9 O -0.456 6.456 10 N -0.332 5.332 11 C -0.018 4.018 12 C -0.166 4.166 13 C -0.147 4.147 14 C 0.084 3.916 15 C -0.006 4.006 16 O -0.381 6.381 17 N -0.346 5.346 18 C -0.294 4.294 19 H 0.093 0.907 20 C -0.275 4.275 21 N -0.629 5.629 22 Si 0.773 3.227 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.240 1.240 26 C -0.005 4.005 27 N -0.196 5.196 28 C -0.076 4.076 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.153 0.847 37 H 0.140 0.860 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.060 0.940 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.055 0.945 46 H 0.222 0.778 47 H 0.206 0.794 48 H 0.049 0.951 49 H 0.063 0.937 50 H 0.089 0.911 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.914 5.616 -5.155 18.553 hybrid contribution 1.418 -1.521 0.830 2.239 sum -15.496 4.094 -4.325 16.601 Atomic orbital electron populations 1.21713 0.93222 1.02752 1.02047 1.20525 0.97182 0.89976 1.03864 1.21217 1.00269 0.98890 0.93701 1.21781 0.95885 0.93839 0.99332 1.22221 1.00926 0.96997 0.98844 1.20879 0.96020 0.96204 0.89189 1.20649 0.95379 0.93651 1.02329 1.20757 0.85620 0.82900 0.80776 1.90683 1.67851 1.35273 1.51844 1.47926 1.25990 1.07858 1.51439 1.22136 0.96801 0.84770 0.98096 1.21923 0.95048 1.01733 0.97901 1.21637 0.98245 0.94029 1.00830 1.20438 0.91519 0.91777 0.87887 1.22754 0.96274 0.84908 0.96637 1.86812 1.49679 1.30588 1.70989 1.42502 1.76339 1.12387 1.03412 1.19603 1.27518 0.90165 0.92078 0.90677 1.25067 1.06338 1.00364 0.95744 1.69747 1.59543 1.36777 0.96863 0.85507 0.77204 0.83534 0.76412 1.21068 1.22014 1.23972 1.21808 0.84882 1.01120 0.92663 1.67363 1.10242 1.10138 1.31881 1.22927 0.95513 0.90454 0.98734 0.92555 0.92875 0.90628 0.90279 0.89992 0.82351 0.83174 0.84699 0.85979 0.88503 0.88176 0.93988 0.87356 0.91499 0.88194 0.91669 0.94550 0.77811 0.79447 0.95133 0.93654 0.91081 0.82036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.89 71.98 0.71 -1.32 16 2 C -0.08 -1.43 6.09 29.85 0.18 -1.24 16 3 C -0.14 -3.61 5.15 -19.77 -0.10 -3.72 16 4 C -0.08 -2.16 9.86 22.47 0.22 -1.93 16 5 C -0.17 -5.05 9.71 22.36 0.22 -4.83 16 6 C 0.11 3.94 5.76 42.55 0.25 4.19 16 7 C -0.08 -2.44 4.45 29.10 0.13 -2.31 16 8 C 0.51 20.91 7.63 87.66 0.67 21.58 16 9 O -0.58 -30.62 14.75 -3.03 -0.04 -30.67 16 10 N -0.60 -20.96 2.88 -818.01 -2.36 -23.32 16 11 C 0.10 2.36 6.37 86.51 0.55 2.91 16 12 C -0.13 -3.09 5.93 30.82 0.18 -2.91 16 13 C -0.11 -2.87 4.76 30.62 0.15 -2.72 16 14 C 0.18 6.45 0.68 3.69 0.00 6.45 16 15 C 0.07 2.50 6.08 71.98 0.44 2.94 16 16 O -0.57 -22.64 10.11 -148.98 -1.51 -24.14 16 17 N -0.71 -34.83 4.75 -302.94 -1.44 -36.27 16 18 C -0.16 -9.42 8.21 84.03 0.69 -8.73 16 19 H 0.08 4.66 5.28 -2.91 -0.02 4.64 16 20 C -0.09 -5.31 5.50 84.86 0.47 -4.84 16 21 N -0.97 -62.20 13.06 21.65 0.28 -61.92 16 22 Si 0.94 52.92 29.55 68.60 2.03 54.95 16 23 H -0.29 -16.02 7.11 99.48 0.71 -15.31 16 24 H -0.29 -15.97 7.11 99.48 0.71 -15.26 16 25 H -0.31 -17.94 7.11 99.48 0.71 -17.23 16 26 C 0.12 4.64 4.85 86.37 0.42 5.06 16 27 N -0.49 -18.07 9.22 -183.89 -1.70 -19.77 16 28 C 0.08 2.52 10.86 84.67 0.92 3.44 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 32 H 0.08 1.38 8.10 -2.39 -0.02 1.36 16 33 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 34 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 35 H 0.15 3.75 7.95 -2.91 -0.02 3.73 16 36 H 0.14 3.08 7.93 -2.39 -0.02 3.06 16 37 H 0.12 3.21 7.43 -2.39 -0.02 3.19 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.10 1.83 5.93 -2.39 -0.01 1.81 16 40 H 0.04 1.37 6.75 -2.39 -0.02 1.36 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.37 10.77 9.12 -74.06 -0.68 10.09 16 47 H 0.37 19.59 6.43 -92.71 -0.60 18.99 16 48 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 49 H 0.04 2.29 5.70 -2.39 -0.01 2.28 16 50 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 51 H 0.16 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -89.97 402.00 1.04 -88.93 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: -0.32 Total: 40.19 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 6.09 Total: 12.02 kcal Atomic # 7 Polarization: -136.07 SS G_CDS: -5.21 Total: -141.28 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -1.55 Total: -54.81 kcal Atomic # 14 Polarization: 52.92 SS G_CDS: 2.03 Total: 54.95 kcal Total: -89.97 1.04 -88.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484847323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.984 kcal (2) G-P(sol) polarization free energy of solvation -89.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds