Wall clock time and date at job start Wed Apr 1 2020 04:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38021 * 119.50933 * 124.73098 * 3 2 1 5 5 C 1.39928 * 119.12920 * 179.73872 * 4 3 2 6 6 C 1.48160 * 120.89168 * 180.23574 * 5 4 3 7 7 O 1.21515 * 120.00095 * 0.29497 * 6 5 4 8 8 N 1.34774 * 119.99998 * 180.28930 * 6 5 4 9 9 C 1.46499 * 120.00343 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46814 * 35.00174 * 9 8 6 11 11 C 1.52997 * 109.47186 * 275.00288 * 9 8 6 12 12 C 1.52998 * 109.47201 * 299.99945 * 11 9 8 13 13 C 1.53003 * 109.47129 * 299.99766 * 12 11 9 14 14 C 1.52997 * 109.46887 * 60.00042 * 13 12 11 15 15 C 1.53001 * 109.47537 * 300.00019 * 14 13 12 16 16 H 1.09003 * 109.46999 * 300.00375 * 15 14 13 17 17 C 1.52997 * 109.47537 * 180.02562 * 15 14 13 18 18 N 1.46496 * 109.46845 * 65.00235 * 17 15 14 19 19 C 1.36939 * 119.99866 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99996 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00273 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00261 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99548 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.46851 * 89.99916 * 23 21 19 25 25 H 1.48500 * 109.46617 * 209.99734 * 23 21 19 26 26 H 1.48494 * 109.47422 * 329.99789 * 23 21 19 27 27 C 1.39614 * 118.21239 * 0.52193 * 5 4 3 28 28 C 1.38846 * 118.95124 * 359.73597 * 27 5 4 29 29 O 1.35687 * 119.62100 * 179.97438 * 28 27 5 30 30 N 1.31874 * 119.51085 * 305.00136 * 3 2 1 31 31 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 35 35 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 36 36 H 1.07998 * 120.43542 * 0.02562 * 4 3 2 37 37 H 0.97005 * 120.00040 * 0.02562 * 8 6 5 38 38 H 1.09004 * 109.47222 * 59.99987 * 11 9 8 39 39 H 1.09003 * 109.47282 * 179.97438 * 11 9 8 40 40 H 1.08998 * 109.47546 * 60.00034 * 12 11 9 41 41 H 1.09008 * 109.47163 * 179.97438 * 12 11 9 42 42 H 1.08999 * 109.47371 * 180.02562 * 13 12 11 43 43 H 1.09003 * 109.46979 * 300.00077 * 13 12 11 44 44 H 1.09003 * 109.47282 * 60.00221 * 14 13 12 45 45 H 1.09004 * 109.47276 * 180.02562 * 14 13 12 46 46 H 1.08999 * 109.47097 * 185.00397 * 17 15 14 47 47 H 1.08997 * 109.47310 * 305.00009 * 17 15 14 48 48 H 0.96994 * 120.00453 * 359.97438 * 18 17 15 49 49 H 0.96996 * 119.99861 * 179.97438 * 22 21 19 50 50 H 1.08005 * 120.52038 * 179.75900 * 27 5 4 51 51 H 0.96703 * 114.00281 * 270.02499 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9042 1.8337 0.9872 5 6 3.3699 3.1532 0.9764 6 6 4.3107 3.6363 2.0140 7 8 4.6923 2.8819 2.8868 8 7 4.7433 4.9125 1.9897 9 6 5.6740 5.3901 3.0154 10 1 6.3568 4.5858 3.2893 11 6 4.8878 5.8344 4.2504 12 6 3.9294 6.9633 3.8659 13 6 4.7292 8.1468 3.3176 14 6 5.5154 7.7025 2.0826 15 6 6.4738 6.5735 2.4670 16 1 7.1663 6.9288 3.2301 17 6 7.2605 6.1297 1.2321 18 7 8.1174 7.2278 0.7784 19 6 8.9191 7.0621 -0.3194 20 1 8.9199 6.1216 -0.8504 21 6 9.7307 8.1028 -0.7498 22 7 10.5016 7.9433 -1.8046 23 14 9.7298 9.7291 0.1692 24 1 10.7621 9.6953 1.2362 25 1 10.0323 10.8326 -0.7775 26 1 8.3945 9.9523 0.7792 27 6 2.9195 4.0038 -0.0349 28 6 2.0378 3.5089 -0.9865 29 8 1.5911 4.3239 -1.9751 30 7 1.6282 2.2528 -0.9401 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 3.2263 1.1461 1.7552 37 1 4.4385 5.5148 1.2931 38 1 4.3180 4.9913 4.6411 39 1 5.5803 6.1893 5.0137 40 1 3.2369 6.6080 3.1029 41 1 3.3689 7.2795 4.7458 42 1 4.0464 8.9513 3.0441 43 1 5.4216 8.5021 4.0808 44 1 4.8229 7.3472 1.3194 45 1 6.0856 8.5455 1.6922 46 1 7.8779 5.2677 1.4851 47 1 6.5661 5.8583 0.4370 48 1 8.1165 8.0726 1.2550 49 1 11.0684 8.6706 -2.1055 50 1 3.2520 5.0306 -0.0766 51 1 0.7795 4.8013 -1.7546 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498493442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:56 Heat of formation + Delta-G solvation = -73.154131 kcal Electronic energy + Delta-G solvation = -31161.112542 eV Core-core repulsion = 27059.093560 eV Total energy + Delta-G solvation = -4102.018981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.09505 -41.12919 -39.40399 -38.27923 -36.63916 -35.32139 -34.55625 -33.88221 -33.30012 -31.65154 -30.99780 -30.30656 -27.23022 -26.22100 -24.89777 -24.41792 -23.58380 -23.17887 -22.15069 -21.62534 -20.16610 -20.00561 -19.63134 -18.39790 -17.92951 -16.95508 -16.86143 -16.73910 -16.43156 -16.41449 -16.00722 -15.63740 -15.40862 -15.25792 -15.15995 -14.99835 -14.83672 -14.63885 -14.20693 -14.08981 -13.83291 -13.49558 -13.20557 -13.07422 -12.97141 -12.91275 -12.78980 -12.73668 -12.58212 -12.38191 -12.16706 -11.95099 -11.92444 -11.86150 -11.49807 -11.38611 -11.25077 -11.08104 -11.03930 -10.91119 -10.55428 -10.11003 -9.93871 -9.31594 -8.04176 -5.38440 -0.48840 -0.15875 1.36171 1.41396 1.48635 1.67394 1.93927 2.42810 2.47413 2.62899 3.26936 3.30774 3.37080 3.48976 3.72546 3.78695 3.82121 3.85445 3.92605 4.12706 4.19735 4.22238 4.28902 4.39820 4.41002 4.43452 4.46226 4.54297 4.62531 4.67386 4.70043 4.77904 4.86359 4.90825 4.98531 5.05374 5.07197 5.13966 5.19093 5.23964 5.26726 5.29440 5.31246 5.38983 5.45860 5.46566 5.56044 5.73059 6.19273 6.34360 6.53796 6.79832 6.99835 7.06440 7.81078 8.02320 9.17616 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011288 B = 0.002860 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.936557 B = 9788.160940 C =10928.278267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C 0.149 3.851 4 C -0.130 4.130 5 C -0.075 4.075 6 C 0.560 3.440 7 O -0.560 6.560 8 N -0.698 5.698 9 C 0.159 3.841 10 H 0.074 0.926 11 C -0.122 4.122 12 C -0.111 4.111 13 C -0.114 4.114 14 C -0.113 4.113 15 C -0.093 4.093 16 H 0.093 0.907 17 C 0.162 3.838 18 N -0.752 5.752 19 C -0.237 4.237 20 H 0.049 0.951 21 C -0.065 4.065 22 N -0.986 5.986 23 Si 0.958 3.042 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.243 1.243 27 C -0.159 4.159 28 C 0.310 3.690 29 O -0.487 6.487 30 N -0.502 5.502 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.158 0.842 37 H 0.408 0.592 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.010 0.990 47 H 0.024 0.976 48 H 0.369 0.631 49 H 0.258 0.742 50 H 0.159 0.841 51 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.358 -7.672 11.957 29.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C 0.012 3.988 4 C -0.151 4.151 5 C -0.086 4.086 6 C 0.347 3.653 7 O -0.440 6.440 8 N -0.351 5.351 9 C 0.055 3.945 10 H 0.092 0.908 11 C -0.160 4.160 12 C -0.148 4.148 13 C -0.152 4.152 14 C -0.150 4.150 15 C -0.112 4.112 16 H 0.111 0.889 17 C 0.036 3.964 18 N -0.398 5.398 19 C -0.368 4.368 20 H 0.067 0.933 21 C -0.257 4.257 22 N -0.636 5.636 23 Si 0.785 3.215 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.168 1.168 27 C -0.181 4.181 28 C 0.131 3.869 29 O -0.297 6.297 30 N -0.223 5.223 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.175 0.825 37 H 0.247 0.753 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.042 0.958 48 H 0.203 0.797 49 H 0.067 0.933 50 H 0.177 0.823 51 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -25.087 -8.709 11.458 28.922 hybrid contribution 0.892 1.679 0.135 1.906 sum -24.195 -7.030 11.593 27.735 Atomic orbital electron populations 1.21642 0.93291 1.02854 1.01901 1.20685 0.97652 0.88136 1.04823 1.21425 0.92244 0.96857 0.88301 1.22275 0.96933 0.95406 1.00473 1.20272 0.97492 0.95272 0.95594 1.18250 0.80627 0.82201 0.84236 1.90755 1.58740 1.56094 1.38368 1.45986 1.46684 1.11146 1.31246 1.20928 0.90286 0.95399 0.87933 0.90791 1.21856 0.99081 0.98868 0.96200 1.21471 0.97449 0.94583 1.01330 1.21544 0.98936 0.97974 0.96701 1.21564 0.97596 0.97333 0.98555 1.21559 0.96965 0.95489 0.97227 0.88915 1.20748 0.91529 0.89734 0.94438 1.42627 1.50106 1.13794 1.33277 1.18989 1.15553 0.98608 1.03620 0.93315 1.25577 0.98792 1.02344 0.98957 1.69903 1.31192 1.33961 1.28548 0.85365 0.79225 0.79074 0.77845 1.20506 1.22315 1.16751 1.22403 0.99890 1.02158 0.93668 1.19082 0.93389 0.87406 0.87041 1.84798 1.48216 1.58104 1.38612 1.66847 1.26388 1.04373 1.24666 0.92928 0.90371 0.92915 0.87864 0.89227 0.82466 0.75350 0.92074 0.89729 0.92040 0.90525 0.90695 0.91366 0.91706 0.92591 0.97202 0.95849 0.79731 0.93305 0.82334 0.71605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.77 71.98 0.70 -0.96 16 2 C -0.08 -1.01 6.33 29.85 0.19 -0.82 16 3 C 0.15 2.91 6.18 42.50 0.26 3.18 16 4 C -0.13 -2.69 9.27 22.63 0.21 -2.48 16 5 C -0.08 -1.69 5.91 -19.90 -0.12 -1.81 16 6 C 0.56 14.23 7.76 86.88 0.67 14.91 16 7 O -0.56 -17.47 16.11 -3.76 -0.06 -17.53 16 8 N -0.70 -15.62 3.58 -445.11 -1.59 -17.22 16 9 C 0.16 3.71 2.23 44.99 0.10 3.81 16 10 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 11 C -0.12 -2.25 5.60 30.59 0.17 -2.07 16 12 C -0.11 -1.68 5.77 30.59 0.18 -1.51 16 13 C -0.11 -1.89 5.92 30.59 0.18 -1.71 16 14 C -0.11 -2.54 4.91 30.59 0.15 -2.39 16 15 C -0.09 -2.42 2.02 -10.79 -0.02 -2.44 16 16 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 17 C 0.16 5.96 5.42 86.38 0.47 6.43 16 18 N -0.75 -34.21 5.13 -343.46 -1.76 -35.97 16 19 C -0.24 -13.60 10.47 84.03 0.88 -12.72 16 20 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 21 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 22 N -0.99 -63.76 13.97 21.65 0.30 -63.46 16 23 Si 0.96 44.67 27.74 68.60 1.90 46.57 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 26 H -0.24 -9.87 6.52 99.48 0.65 -9.22 16 27 C -0.16 -3.19 9.55 22.75 0.22 -2.97 16 28 C 0.31 6.57 7.74 84.78 0.66 7.22 16 29 O -0.49 -8.90 13.56 -90.05 -1.22 -10.12 16 30 N -0.50 -11.18 9.87 -297.16 -2.93 -14.11 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.77 7.94 -2.38 -0.02 0.76 16 34 H 0.10 0.98 7.86 -2.39 -0.02 0.96 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.16 2.98 7.62 -2.91 -0.02 2.96 16 37 H 0.41 8.00 4.81 -92.70 -0.45 7.55 16 38 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 0.92 7.60 -2.39 -0.02 0.90 16 41 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 44 H 0.06 1.35 6.51 -2.39 -0.02 1.34 16 45 H 0.06 1.50 7.18 -2.38 -0.02 1.48 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.02 0.88 7.61 -2.39 -0.02 0.86 16 48 H 0.37 15.62 4.71 -92.71 -0.44 15.19 16 49 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 50 H 0.16 2.58 6.53 -2.91 -0.02 2.56 16 51 H 0.42 3.04 9.06 -74.05 -0.67 2.37 16 Total: -1.00 -77.51 403.82 -0.64 -78.15 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.65 Total: 33.41 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.37 Total: 0.26 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -5.99 Total: -130.75 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -1.28 Total: -27.65 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.90 Total: 46.57 kcal Total: -77.51 -0.64 -78.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498493442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.998 kcal (2) G-P(sol) polarization free energy of solvation -77.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds