Wall clock time and date at job start Wed Apr 1 2020 04:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50701 * 109.47394 * 2 1 4 4 C 1.38027 * 119.50905 * 125.27687 * 3 2 1 5 5 C 1.39932 * 119.12665 * 180.25237 * 4 3 2 6 6 C 1.48165 * 120.88752 * 179.75425 * 5 4 3 7 7 O 1.21512 * 120.00117 * 359.71869 * 6 5 4 8 8 N 1.34779 * 119.99622 * 179.71919 * 6 5 4 9 9 C 1.46500 * 119.99793 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47092 * 325.00176 * 9 8 6 11 11 C 1.52997 * 109.47204 * 85.00113 * 9 8 6 12 12 C 1.53006 * 109.47164 * 60.00075 * 11 9 8 13 13 C 1.52997 * 109.47127 * 59.99836 * 12 11 9 14 14 C 1.53000 * 109.47060 * 300.00449 * 13 12 11 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 16 16 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 17 17 C 1.52997 * 109.46975 * 180.02562 * 15 14 13 18 18 N 1.46499 * 109.47391 * 294.99824 * 17 15 14 19 19 C 1.36939 * 120.00451 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99755 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00077 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00077 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99966 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46780 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46818 * 120.00543 * 23 21 19 26 26 H 1.48492 * 109.47327 * 240.00112 * 23 21 19 27 27 C 1.39607 * 118.21696 * 359.48225 * 5 4 3 28 28 C 1.38844 * 118.95347 * 0.25082 * 27 5 4 29 29 O 1.35681 * 119.62906 * 179.97438 * 28 27 5 30 30 N 1.31872 * 119.51628 * 304.99855 * 3 2 1 31 31 H 1.09000 * 109.47483 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47155 * 300.00271 * 1 2 3 33 33 H 1.09002 * 109.47128 * 59.99988 * 1 2 3 34 34 H 1.09005 * 109.47160 * 240.00182 * 2 1 3 35 35 H 1.09002 * 109.47128 * 120.00012 * 2 1 3 36 36 H 1.07997 * 120.43741 * 0.02562 * 4 3 2 37 37 H 0.96995 * 119.99934 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.47375 * 180.02562 * 11 9 8 39 39 H 1.09000 * 109.47140 * 300.00127 * 11 9 8 40 40 H 1.08998 * 109.46505 * 299.99708 * 12 11 9 41 41 H 1.08996 * 109.46884 * 180.02562 * 12 11 9 42 42 H 1.09002 * 109.47153 * 180.02562 * 13 12 11 43 43 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 44 44 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 45 45 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 46 46 H 1.09004 * 109.47610 * 54.99797 * 17 15 14 47 47 H 1.09001 * 109.47532 * 174.99616 * 17 15 14 48 48 H 0.97002 * 119.99938 * 0.02562 * 18 17 15 49 49 H 0.97000 * 120.00085 * 179.97438 * 22 21 19 50 50 H 1.08006 * 120.52439 * 180.22783 * 27 5 4 51 51 H 0.96702 * 114.00159 * 89.99815 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9130 1.8305 0.9806 5 6 3.3703 3.1530 0.9761 6 6 4.3119 3.6358 2.0133 7 8 4.6933 2.8814 2.8861 8 7 4.7452 4.9117 1.9885 9 6 5.6767 5.3890 3.0136 10 1 5.4492 4.9065 3.9642 11 6 7.1095 5.0487 2.5990 12 6 7.4289 5.7259 1.2647 13 6 7.2881 7.2419 1.4157 14 6 5.8552 7.5822 1.8304 15 6 5.5359 6.9050 3.1646 16 1 6.2289 7.2600 3.9273 17 6 4.1028 7.2448 3.5790 18 7 3.9976 8.6827 3.8392 19 6 2.8005 9.2225 4.2275 20 1 1.9338 8.5883 4.3415 21 6 2.7010 10.5848 4.4745 22 7 3.7571 11.3577 4.3352 23 14 1.0678 11.3212 5.0035 24 1 0.0444 10.2483 5.0854 25 1 1.2214 11.9610 6.3348 26 1 0.6396 12.3397 4.0114 27 6 2.9200 4.0037 -0.0351 28 6 2.0383 3.5088 -0.9867 29 8 1.5915 4.3237 -1.9753 30 7 1.6284 2.2528 -0.9401 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.2420 1.1405 1.7435 37 1 4.4404 5.5140 1.2919 38 1 7.8025 5.4033 3.3619 39 1 7.2098 3.9686 2.4914 40 1 6.7359 5.3708 0.5020 41 1 8.4495 5.4831 0.9691 42 1 7.5151 7.7244 0.4650 43 1 7.9811 7.5970 2.1784 44 1 5.7548 8.6623 1.9375 45 1 5.1621 7.2272 1.0677 46 1 3.4177 6.9697 2.7770 47 1 3.8450 6.6923 4.4825 48 1 4.7759 9.2524 3.7365 49 1 3.6875 12.3098 4.5074 50 1 3.2520 5.0306 -0.0764 51 1 2.1443 4.3191 -2.7687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498493446.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:04 Heat of formation + Delta-G solvation = -51.588970 kcal Electronic energy + Delta-G solvation = -31100.237669 eV Core-core repulsion = 26999.153823 eV Total energy + Delta-G solvation = -4101.083846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18564 -40.11593 -38.28401 -37.49689 -34.70056 -34.45300 -33.65278 -32.48588 -31.95005 -30.08340 -29.69777 -29.31862 -25.64095 -25.14111 -24.07682 -23.04889 -22.72300 -22.17828 -20.95062 -20.46191 -19.10669 -19.08347 -17.58363 -17.21946 -16.93704 -16.04520 -15.86796 -15.59913 -15.34056 -14.99290 -14.87085 -14.59633 -14.35441 -14.20928 -14.02931 -13.69946 -13.45990 -13.27173 -13.10393 -12.79693 -12.58792 -12.33010 -12.18017 -12.10649 -12.01640 -11.74990 -11.73715 -11.47345 -11.36341 -10.93406 -10.91134 -10.77563 -10.45993 -10.33692 -10.21651 -10.16990 -10.01205 -9.91529 -9.70687 -9.65091 -9.15428 -9.03799 -8.88135 -6.94046 -5.78927 -3.07295 0.39564 0.63330 2.63328 2.94720 3.18950 3.42319 3.47136 3.48695 3.50495 4.08484 4.31152 4.55282 4.62098 4.63518 4.75829 4.82314 4.83907 4.86653 4.91741 4.98665 5.14207 5.19018 5.26938 5.38521 5.43212 5.52518 5.54824 5.57805 5.58243 5.61622 5.68189 5.68944 5.75799 5.80182 5.96923 5.98015 6.07868 6.10240 6.11722 6.18848 6.20950 6.30863 6.41032 6.47130 6.62760 6.75954 6.81758 7.14365 7.37911 7.55736 7.69466 8.03468 8.40186 9.51798 10.08646 10.43513 11.43949 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009003 B = 0.003006 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.160154 B = 9311.634318 C =11008.579144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C 0.151 3.849 4 C -0.125 4.125 5 C -0.064 4.064 6 C 0.558 3.442 7 O -0.530 6.530 8 N -0.704 5.704 9 C 0.154 3.846 10 H 0.091 0.909 11 C -0.128 4.128 12 C -0.116 4.116 13 C -0.121 4.121 14 C -0.111 4.111 15 C -0.102 4.102 16 H 0.088 0.912 17 C 0.159 3.841 18 N -0.730 5.730 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.160 4.160 28 C 0.315 3.685 29 O -0.477 6.477 30 N -0.486 5.486 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.152 0.848 37 H 0.401 0.599 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.017 0.983 47 H 0.018 0.982 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.146 0.854 51 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.227 -20.579 -12.791 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C 0.013 3.987 4 C -0.146 4.146 5 C -0.075 4.075 6 C 0.344 3.656 7 O -0.407 6.407 8 N -0.356 5.356 9 C 0.050 3.950 10 H 0.109 0.891 11 C -0.167 4.167 12 C -0.154 4.154 13 C -0.159 4.159 14 C -0.148 4.148 15 C -0.121 4.121 16 H 0.106 0.894 17 C 0.032 3.968 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.182 4.182 28 C 0.136 3.864 29 O -0.284 6.284 30 N -0.206 5.206 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.169 0.831 37 H 0.239 0.761 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.036 0.964 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.163 0.837 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 3.323 -21.169 -12.364 24.739 hybrid contribution 0.040 1.432 0.146 1.440 sum 3.363 -19.736 -12.219 23.455 Atomic orbital electron populations 1.21690 0.93819 1.01911 1.02924 1.20540 0.97300 0.89645 1.03572 1.21006 0.92553 0.95803 0.89363 1.22132 0.97347 0.95577 0.99548 1.20338 0.97483 0.94494 0.95183 1.18056 0.80563 0.82536 0.84490 1.90771 1.57897 1.55329 1.36746 1.46049 1.46852 1.11181 1.31489 1.21053 0.87937 0.94740 0.91300 0.89094 1.21910 0.96113 1.00632 0.98033 1.21498 1.00843 0.95778 0.97242 1.21592 0.97667 0.95287 1.01316 1.21539 0.95225 1.02162 0.95910 1.21644 0.99759 0.92192 0.98546 0.89366 1.20646 0.91939 0.87308 0.96941 1.42360 1.11002 1.01837 1.82278 1.19262 0.88736 0.91369 1.37561 0.91262 1.24718 0.97345 0.96247 1.02607 1.69661 1.28062 1.04550 1.55949 0.86137 0.83267 0.79031 0.77906 1.20569 1.21859 1.21848 1.22329 0.98119 1.01535 0.96209 1.18931 0.90675 0.86441 0.90357 1.84842 1.54793 1.61275 1.27450 1.66767 1.24205 1.03692 1.25981 0.92113 0.92682 0.91516 0.89663 0.89751 0.83064 0.76137 0.90750 0.91680 0.92452 0.92353 0.92192 0.91764 0.90088 0.92894 0.96550 0.96391 0.78196 0.93576 0.83672 0.74092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.77 37.15 0.36 -0.74 16 2 C -0.07 -0.53 6.33 -27.89 -0.18 -0.71 16 3 C 0.15 1.53 6.18 -82.65 -0.51 1.02 16 4 C -0.13 -1.34 9.27 -39.02 -0.36 -1.70 16 5 C -0.06 -0.75 5.91 -104.68 -0.62 -1.36 16 6 C 0.56 7.41 7.76 -12.18 -0.09 7.32 16 7 O -0.53 -8.46 16.11 5.35 0.09 -8.38 16 8 N -0.70 -8.61 3.57 -54.65 -0.20 -8.80 16 9 C 0.15 2.01 2.23 -67.93 -0.15 1.86 16 10 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 11 C -0.13 -1.44 5.60 -26.73 -0.15 -1.59 16 12 C -0.12 -1.18 5.77 -26.73 -0.15 -1.33 16 13 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 14 C -0.11 -1.51 4.90 -26.73 -0.13 -1.64 16 15 C -0.10 -1.52 2.02 -90.62 -0.18 -1.70 16 16 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 17 C 0.16 3.09 5.42 -4.04 -0.02 3.07 16 18 N -0.73 -17.91 5.33 -59.91 -0.32 -18.23 16 19 C -0.24 -6.62 9.99 -15.06 -0.15 -6.78 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 23 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 C -0.16 -1.70 9.55 -38.85 -0.37 -2.07 16 28 C 0.31 3.48 7.74 -17.17 -0.13 3.35 16 29 O -0.48 -4.63 13.56 -18.75 -0.25 -4.88 16 30 N -0.49 -5.58 9.87 -9.60 -0.09 -5.68 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.59 7.94 -51.93 -0.41 0.17 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 36 H 0.15 1.49 7.62 -52.49 -0.40 1.09 16 37 H 0.40 4.47 4.81 -40.82 -0.20 4.28 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.57 7.60 -51.93 -0.39 0.18 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.34 7.18 -51.93 -0.37 0.96 16 45 H 0.05 0.67 6.51 -51.93 -0.34 0.34 16 46 H 0.02 0.32 7.61 -51.93 -0.39 -0.07 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.38 9.80 6.85 -40.82 -0.28 9.52 16 49 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.15 1.32 6.53 -52.48 -0.34 0.98 16 51 H 0.40 1.75 9.06 45.56 0.41 2.17 16 LS Contribution 406.92 15.07 6.13 6.13 Total: -1.00 -33.89 406.92 -9.34 -43.22 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -7.29 Total: 11.32 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -3.10 Total: -5.00 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.12 Total: -59.87 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.17 Total: -13.26 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.89 -9.34 -43.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498493446.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.367 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds